Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2465

Experiment: m.b. Nickel (II) chloride 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2464 and B158DRAFT_2465 are separated by 140 nucleotidesB158DRAFT_2465 and B158DRAFT_2466 are separated by 72 nucleotides B158DRAFT_2464: B158DRAFT_2464 - Outer membrane protein, at 643,604 to 644,959 _2464 B158DRAFT_2465: B158DRAFT_2465 - hypothetical protein, at 645,100 to 645,510 _2465 B158DRAFT_2466: B158DRAFT_2466 - methionine synthase (B12-dependent) (EC 2.1.1.13), at 645,583 to 649,266 _2466 Position (kb) 645 646Strain fitness (log2 ratio) -1 0 1at 644.381 kb on - strand, within B158DRAFT_2464at 644.419 kb on + strand, within B158DRAFT_2464at 644.465 kb on - strand, within B158DRAFT_2464at 644.476 kb on + strand, within B158DRAFT_2464at 644.491 kb on - strand, within B158DRAFT_2464at 644.491 kb on - strand, within B158DRAFT_2464at 644.578 kb on - strand, within B158DRAFT_2464at 644.625 kb on + strand, within B158DRAFT_2464at 644.625 kb on + strand, within B158DRAFT_2464at 644.625 kb on + strand, within B158DRAFT_2464at 644.633 kb on - strand, within B158DRAFT_2464at 644.633 kb on - strand, within B158DRAFT_2464at 644.633 kb on - strand, within B158DRAFT_2464at 644.643 kb on - strand, within B158DRAFT_2464at 644.677 kb on + strand, within B158DRAFT_2464at 644.735 kb on + strand, within B158DRAFT_2464at 644.751 kb on - strand, within B158DRAFT_2464at 644.762 kb on + strand, within B158DRAFT_2464at 644.853 kb on - strandat 644.853 kb on - strandat 644.883 kb on - strandat 645.031 kb on - strandat 645.070 kb on + strandat 645.070 kb on + strandat 645.078 kb on - strandat 645.078 kb on - strandat 645.078 kb on - strandat 645.078 kb on - strandat 645.087 kb on + strandat 645.087 kb on + strandat 645.087 kb on + strandat 645.087 kb on + strandat 645.095 kb on - strandat 645.095 kb on - strandat 645.099 kb on + strandat 645.128 kb on + strandat 645.148 kb on + strand, within B158DRAFT_2465at 645.209 kb on + strand, within B158DRAFT_2465at 645.223 kb on + strand, within B158DRAFT_2465at 645.231 kb on - strand, within B158DRAFT_2465at 645.272 kb on - strand, within B158DRAFT_2465at 645.324 kb on - strand, within B158DRAFT_2465at 645.328 kb on + strand, within B158DRAFT_2465at 645.328 kb on + strand, within B158DRAFT_2465at 645.338 kb on + strand, within B158DRAFT_2465at 645.343 kb on + strand, within B158DRAFT_2465at 645.346 kb on - strand, within B158DRAFT_2465at 645.350 kb on - strand, within B158DRAFT_2465at 645.393 kb on + strand, within B158DRAFT_2465at 645.393 kb on + strand, within B158DRAFT_2465at 645.408 kb on + strand, within B158DRAFT_2465at 645.457 kb on + strand, within B158DRAFT_2465at 645.465 kb on - strand, within B158DRAFT_2465at 645.470 kb on - strandat 645.490 kb on + strandat 645.506 kb on - strandat 645.539 kb on - strandat 645.600 kb on + strandat 645.603 kb on - strandat 645.606 kb on + strandat 645.608 kb on - strandat 645.608 kb on - strandat 645.608 kb on - strandat 645.608 kb on - strandat 645.608 kb on - strandat 645.626 kb on + strandat 645.634 kb on + strandat 645.634 kb on + strandat 645.641 kb on + strandat 645.641 kb on + strandat 645.649 kb on - strandat 645.649 kb on - strandat 645.649 kb on - strandat 645.659 kb on - strandat 645.659 kb on - strandat 645.688 kb on - strandat 645.727 kb on + strandat 645.740 kb on + strandat 645.743 kb on + strandat 645.767 kb on + strandat 645.779 kb on + strandat 645.813 kb on - strandat 645.813 kb on - strandat 645.815 kb on + strandat 645.823 kb on - strandat 645.825 kb on + strandat 645.849 kb on - strandat 645.850 kb on + strandat 645.850 kb on + strandat 645.850 kb on + strandat 645.850 kb on + strandat 645.858 kb on - strandat 645.858 kb on - strandat 645.858 kb on - strandat 645.858 kb on - strandat 645.860 kb on + strandat 645.860 kb on + strandat 645.896 kb on + strandat 645.970 kb on + strand, within B158DRAFT_2466at 645.983 kb on + strand, within B158DRAFT_2466at 646.034 kb on - strand, within B158DRAFT_2466at 646.040 kb on + strand, within B158DRAFT_2466at 646.085 kb on + strand, within B158DRAFT_2466at 646.219 kb on - strand, within B158DRAFT_2466at 646.223 kb on + strand, within B158DRAFT_2466at 646.238 kb on - strand, within B158DRAFT_2466

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
remove
644,381 - B158DRAFT_2464 0.57 -0.5
644,419 + B158DRAFT_2464 0.60 -0.6
644,465 - B158DRAFT_2464 0.63 -0.1
644,476 + B158DRAFT_2464 0.64 +1.1
644,491 - B158DRAFT_2464 0.65 +0.4
644,491 - B158DRAFT_2464 0.65 +0.1
644,578 - B158DRAFT_2464 0.72 +0.7
644,625 + B158DRAFT_2464 0.75 +0.0
644,625 + B158DRAFT_2464 0.75 -0.2
644,625 + B158DRAFT_2464 0.75 +0.0
644,633 - B158DRAFT_2464 0.76 +0.0
644,633 - B158DRAFT_2464 0.76 -0.0
644,633 - B158DRAFT_2464 0.76 -0.2
644,643 - B158DRAFT_2464 0.77 -0.3
644,677 + B158DRAFT_2464 0.79 +0.7
644,735 + B158DRAFT_2464 0.83 +0.4
644,751 - B158DRAFT_2464 0.85 -0.4
644,762 + B158DRAFT_2464 0.85 +0.2
644,853 - +0.4
644,853 - -1.0
644,883 - -0.8
645,031 - +0.1
645,070 + +0.3
645,070 + -0.0
645,078 - -0.1
645,078 - -0.7
645,078 - +0.1
645,078 - -0.0
645,087 + +0.2
645,087 + -0.5
645,087 + +0.6
645,087 + -0.1
645,095 - -0.4
645,095 - +0.2
645,099 + -0.1
645,128 + +0.1
645,148 + B158DRAFT_2465 0.12 -0.6
645,209 + B158DRAFT_2465 0.27 -0.2
645,223 + B158DRAFT_2465 0.30 +0.1
645,231 - B158DRAFT_2465 0.32 -0.4
645,272 - B158DRAFT_2465 0.42 +0.4
645,324 - B158DRAFT_2465 0.55 -0.0
645,328 + B158DRAFT_2465 0.55 -0.6
645,328 + B158DRAFT_2465 0.55 -0.1
645,338 + B158DRAFT_2465 0.58 -0.1
645,343 + B158DRAFT_2465 0.59 +0.2
645,346 - B158DRAFT_2465 0.60 +0.1
645,350 - B158DRAFT_2465 0.61 -0.6
645,393 + B158DRAFT_2465 0.71 +1.2
645,393 + B158DRAFT_2465 0.71 -1.5
645,408 + B158DRAFT_2465 0.75 -0.7
645,457 + B158DRAFT_2465 0.87 +0.1
645,465 - B158DRAFT_2465 0.89 -0.7
645,470 - -0.5
645,490 + -0.1
645,506 - -0.4
645,539 - -0.3
645,600 + -0.5
645,603 - +0.4
645,606 + +0.0
645,608 - -0.6
645,608 - +0.1
645,608 - +1.2
645,608 - -0.6
645,608 - -0.2
645,626 + +0.1
645,634 + +0.4
645,634 + +0.4
645,641 + -0.2
645,641 + +0.1
645,649 - -0.5
645,649 - +0.1
645,649 - +0.4
645,659 - -0.7
645,659 - -0.0
645,688 - +0.2
645,727 + -0.8
645,740 + -0.1
645,743 + -0.9
645,767 + +0.1
645,779 + +0.1
645,813 - -0.0
645,813 - -0.0
645,815 + +0.4
645,823 - -0.4
645,825 + +0.1
645,849 - -1.3
645,850 + +0.1
645,850 + -0.6
645,850 + +1.4
645,850 + +0.1
645,858 - -0.3
645,858 - -0.4
645,858 - -0.5
645,858 - -1.1
645,860 + -0.0
645,860 + -0.2
645,896 + -0.1
645,970 + B158DRAFT_2466 0.11 -0.4
645,983 + B158DRAFT_2466 0.11 -0.8
646,034 - B158DRAFT_2466 0.12 -1.0
646,040 + B158DRAFT_2466 0.12 -0.5
646,085 + B158DRAFT_2466 0.14 +0.5
646,219 - B158DRAFT_2466 0.17 -0.1
646,223 + B158DRAFT_2466 0.17 -0.7
646,238 - B158DRAFT_2466 0.18 -0.4

Or see this region's nucleotide sequence