Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2415

Experiment: m.b. Nickel (II) chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2413 and B158DRAFT_2414 are separated by 9 nucleotidesB158DRAFT_2414 and B158DRAFT_2415 are separated by 14 nucleotidesB158DRAFT_2415 and B158DRAFT_2416 overlap by 1 nucleotidesB158DRAFT_2416 and B158DRAFT_2417 are separated by 2 nucleotides B158DRAFT_2413: B158DRAFT_2413 - prepilin-type N-terminal cleavage/methylation domain, at 584,578 to 585,306 _2413 B158DRAFT_2414: B158DRAFT_2414 - hypothetical protein, at 585,316 to 585,879 _2414 B158DRAFT_2415: B158DRAFT_2415 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 585,894 to 588,968 _2415 B158DRAFT_2416: B158DRAFT_2416 - prepilin-type N-terminal cleavage/methylation domain, at 588,968 to 589,417 _2416 B158DRAFT_2417: B158DRAFT_2417 - prepilin-type N-terminal cleavage/methylation domain, at 589,420 to 589,827 _2417 Position (kb) 585 586 587 588 589Strain fitness (log2 ratio) -2 -1 0 1at 584.921 kb on - strand, within B158DRAFT_2413at 584.978 kb on - strand, within B158DRAFT_2413at 585.014 kb on + strand, within B158DRAFT_2413at 585.014 kb on + strand, within B158DRAFT_2413at 585.057 kb on + strand, within B158DRAFT_2413at 585.058 kb on + strand, within B158DRAFT_2413at 585.058 kb on - strand, within B158DRAFT_2413at 585.127 kb on + strand, within B158DRAFT_2413at 585.187 kb on + strand, within B158DRAFT_2413at 585.195 kb on - strand, within B158DRAFT_2413at 585.497 kb on - strand, within B158DRAFT_2414at 585.497 kb on - strand, within B158DRAFT_2414at 585.667 kb on + strand, within B158DRAFT_2414at 585.826 kb on + strandat 585.956 kb on - strandat 586.029 kb on + strandat 586.056 kb on - strandat 586.139 kb on + strandat 586.139 kb on + strandat 586.147 kb on - strandat 586.211 kb on - strand, within B158DRAFT_2415at 586.211 kb on - strand, within B158DRAFT_2415at 586.240 kb on + strand, within B158DRAFT_2415at 586.241 kb on - strand, within B158DRAFT_2415at 586.266 kb on + strand, within B158DRAFT_2415at 586.313 kb on + strand, within B158DRAFT_2415at 586.357 kb on + strand, within B158DRAFT_2415at 586.421 kb on + strand, within B158DRAFT_2415at 586.525 kb on - strand, within B158DRAFT_2415at 586.527 kb on + strand, within B158DRAFT_2415at 586.619 kb on + strand, within B158DRAFT_2415at 586.637 kb on - strand, within B158DRAFT_2415at 586.774 kb on - strand, within B158DRAFT_2415at 586.801 kb on + strand, within B158DRAFT_2415at 586.809 kb on - strand, within B158DRAFT_2415at 586.809 kb on - strand, within B158DRAFT_2415at 586.820 kb on + strand, within B158DRAFT_2415at 587.035 kb on - strand, within B158DRAFT_2415at 587.035 kb on - strand, within B158DRAFT_2415at 587.067 kb on + strand, within B158DRAFT_2415at 587.073 kb on + strand, within B158DRAFT_2415at 587.075 kb on - strand, within B158DRAFT_2415at 587.081 kb on - strand, within B158DRAFT_2415at 587.108 kb on - strand, within B158DRAFT_2415at 587.160 kb on + strand, within B158DRAFT_2415at 587.168 kb on - strand, within B158DRAFT_2415at 587.170 kb on + strand, within B158DRAFT_2415at 587.250 kb on - strand, within B158DRAFT_2415at 587.258 kb on + strand, within B158DRAFT_2415at 587.277 kb on + strand, within B158DRAFT_2415at 587.278 kb on - strand, within B158DRAFT_2415at 587.282 kb on + strand, within B158DRAFT_2415at 587.285 kb on - strand, within B158DRAFT_2415at 587.301 kb on + strand, within B158DRAFT_2415at 587.344 kb on + strand, within B158DRAFT_2415at 587.387 kb on - strand, within B158DRAFT_2415at 587.446 kb on + strand, within B158DRAFT_2415at 587.583 kb on + strand, within B158DRAFT_2415at 587.583 kb on + strand, within B158DRAFT_2415at 587.608 kb on + strand, within B158DRAFT_2415at 587.623 kb on - strand, within B158DRAFT_2415at 587.634 kb on + strand, within B158DRAFT_2415at 587.648 kb on - strand, within B158DRAFT_2415at 587.666 kb on - strand, within B158DRAFT_2415at 587.666 kb on - strand, within B158DRAFT_2415at 587.750 kb on - strand, within B158DRAFT_2415at 587.865 kb on + strand, within B158DRAFT_2415at 587.873 kb on + strand, within B158DRAFT_2415at 587.883 kb on + strand, within B158DRAFT_2415at 587.883 kb on + strand, within B158DRAFT_2415at 587.891 kb on - strand, within B158DRAFT_2415at 588.022 kb on + strand, within B158DRAFT_2415at 588.078 kb on + strand, within B158DRAFT_2415at 588.078 kb on + strand, within B158DRAFT_2415at 588.078 kb on + strand, within B158DRAFT_2415at 588.078 kb on + strand, within B158DRAFT_2415at 588.214 kb on - strand, within B158DRAFT_2415at 588.293 kb on - strand, within B158DRAFT_2415at 588.328 kb on + strand, within B158DRAFT_2415at 588.458 kb on - strand, within B158DRAFT_2415at 588.463 kb on - strand, within B158DRAFT_2415at 588.586 kb on + strand, within B158DRAFT_2415at 588.614 kb on + strand, within B158DRAFT_2415at 588.614 kb on + strand, within B158DRAFT_2415at 588.614 kb on + strand, within B158DRAFT_2415at 588.622 kb on - strand, within B158DRAFT_2415at 588.691 kb on + strandat 588.701 kb on + strandat 588.701 kb on + strandat 588.701 kb on + strandat 588.701 kb on + strandat 588.701 kb on + strandat 588.701 kb on + strandat 588.702 kb on - strandat 588.702 kb on - strandat 588.709 kb on - strandat 588.709 kb on - strandat 588.709 kb on - strandat 588.719 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.727 kb on + strandat 588.735 kb on - strandat 588.735 kb on - strandat 588.735 kb on - strandat 588.795 kb on + strandat 588.795 kb on + strandat 588.795 kb on + strandat 588.841 kb on + strandat 588.926 kb on + strandat 588.934 kb on - strandat 589.247 kb on - strand, within B158DRAFT_2416at 589.329 kb on + strand, within B158DRAFT_2416at 589.337 kb on - strand, within B158DRAFT_2416at 589.547 kb on + strand, within B158DRAFT_2417at 589.596 kb on + strand, within B158DRAFT_2417at 589.596 kb on + strand, within B158DRAFT_2417at 589.596 kb on + strand, within B158DRAFT_2417at 589.596 kb on - strand, within B158DRAFT_2417at 589.604 kb on - strand, within B158DRAFT_2417at 589.688 kb on - strand, within B158DRAFT_2417at 589.688 kb on - strand, within B158DRAFT_2417at 589.805 kb on - strandat 589.850 kb on + strandat 589.960 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
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584,921 - B158DRAFT_2413 0.47 +1.0
584,978 - B158DRAFT_2413 0.55 +0.5
585,014 + B158DRAFT_2413 0.60 +0.2
585,014 + B158DRAFT_2413 0.60 +0.0
585,057 + B158DRAFT_2413 0.66 -0.1
585,058 + B158DRAFT_2413 0.66 -0.1
585,058 - B158DRAFT_2413 0.66 +0.0
585,127 + B158DRAFT_2413 0.75 -0.2
585,187 + B158DRAFT_2413 0.84 +0.3
585,195 - B158DRAFT_2413 0.85 +0.3
585,497 - B158DRAFT_2414 0.32 +0.2
585,497 - B158DRAFT_2414 0.32 +0.3
585,667 + B158DRAFT_2414 0.62 +0.3
585,826 + -0.1
585,956 - +0.6
586,029 + +0.3
586,056 - +0.1
586,139 + -0.3
586,139 + +0.4
586,147 - +0.3
586,211 - B158DRAFT_2415 0.10 +0.2
586,211 - B158DRAFT_2415 0.10 +0.9
586,240 + B158DRAFT_2415 0.11 +0.4
586,241 - B158DRAFT_2415 0.11 +0.6
586,266 + B158DRAFT_2415 0.12 +0.1
586,313 + B158DRAFT_2415 0.14 +0.5
586,357 + B158DRAFT_2415 0.15 +0.9
586,421 + B158DRAFT_2415 0.17 +0.3
586,525 - B158DRAFT_2415 0.21 +0.1
586,527 + B158DRAFT_2415 0.21 +0.8
586,619 + B158DRAFT_2415 0.24 -0.2
586,637 - B158DRAFT_2415 0.24 +0.7
586,774 - B158DRAFT_2415 0.29 +0.5
586,801 + B158DRAFT_2415 0.29 +0.6
586,809 - B158DRAFT_2415 0.30 +0.5
586,809 - B158DRAFT_2415 0.30 +0.9
586,820 + B158DRAFT_2415 0.30 -0.1
587,035 - B158DRAFT_2415 0.37 +0.7
587,035 - B158DRAFT_2415 0.37 -0.0
587,067 + B158DRAFT_2415 0.38 -0.0
587,073 + B158DRAFT_2415 0.38 +0.1
587,075 - B158DRAFT_2415 0.38 +0.5
587,081 - B158DRAFT_2415 0.39 +1.1
587,108 - B158DRAFT_2415 0.39 +0.7
587,160 + B158DRAFT_2415 0.41 +0.7
587,168 - B158DRAFT_2415 0.41 +0.4
587,170 + B158DRAFT_2415 0.41 +0.4
587,250 - B158DRAFT_2415 0.44 +0.2
587,258 + B158DRAFT_2415 0.44 +0.3
587,277 + B158DRAFT_2415 0.45 -0.2
587,278 - B158DRAFT_2415 0.45 +0.1
587,282 + B158DRAFT_2415 0.45 +0.8
587,285 - B158DRAFT_2415 0.45 +1.1
587,301 + B158DRAFT_2415 0.46 +0.8
587,344 + B158DRAFT_2415 0.47 -0.8
587,387 - B158DRAFT_2415 0.49 +0.4
587,446 + B158DRAFT_2415 0.50 -0.5
587,583 + B158DRAFT_2415 0.55 +0.7
587,583 + B158DRAFT_2415 0.55 +0.0
587,608 + B158DRAFT_2415 0.56 +0.6
587,623 - B158DRAFT_2415 0.56 +0.5
587,634 + B158DRAFT_2415 0.57 +0.8
587,648 - B158DRAFT_2415 0.57 +0.6
587,666 - B158DRAFT_2415 0.58 +1.2
587,666 - B158DRAFT_2415 0.58 +0.7
587,750 - B158DRAFT_2415 0.60 +0.7
587,865 + B158DRAFT_2415 0.64 +0.2
587,873 + B158DRAFT_2415 0.64 +0.4
587,883 + B158DRAFT_2415 0.65 +0.2
587,883 + B158DRAFT_2415 0.65 -1.0
587,891 - B158DRAFT_2415 0.65 +0.2
588,022 + B158DRAFT_2415 0.69 +0.8
588,078 + B158DRAFT_2415 0.71 +0.3
588,078 + B158DRAFT_2415 0.71 +1.6
588,078 + B158DRAFT_2415 0.71 -0.4
588,078 + B158DRAFT_2415 0.71 +0.6
588,214 - B158DRAFT_2415 0.75 +0.3
588,293 - B158DRAFT_2415 0.78 +0.2
588,328 + B158DRAFT_2415 0.79 +0.5
588,458 - B158DRAFT_2415 0.83 +0.7
588,463 - B158DRAFT_2415 0.84 +1.0
588,586 + B158DRAFT_2415 0.88 -1.4
588,614 + B158DRAFT_2415 0.88 -0.2
588,614 + B158DRAFT_2415 0.88 -0.3
588,614 + B158DRAFT_2415 0.88 -0.2
588,622 - B158DRAFT_2415 0.89 +0.5
588,691 + +0.3
588,701 + +0.1
588,701 + +0.8
588,701 + +0.0
588,701 + -0.3
588,701 + +1.0
588,701 + -2.3
588,702 - +0.5
588,702 - +0.3
588,709 - +0.5
588,709 - +0.2
588,709 - +0.0
588,719 + -0.2
588,727 + +0.1
588,727 + +0.1
588,727 + -0.4
588,727 + -0.2
588,727 + +0.9
588,727 + -1.2
588,727 + +0.5
588,735 - +0.8
588,735 - -0.3
588,735 - +0.7
588,795 + -0.1
588,795 + +0.1
588,795 + +0.4
588,841 + +0.6
588,926 + +0.5
588,934 - +0.9
589,247 - B158DRAFT_2416 0.62 +0.8
589,329 + B158DRAFT_2416 0.80 +1.0
589,337 - B158DRAFT_2416 0.82 +1.0
589,547 + B158DRAFT_2417 0.31 +0.8
589,596 + B158DRAFT_2417 0.43 +0.6
589,596 + B158DRAFT_2417 0.43 +0.7
589,596 + B158DRAFT_2417 0.43 +1.3
589,596 - B158DRAFT_2417 0.43 +0.7
589,604 - B158DRAFT_2417 0.45 +1.1
589,688 - B158DRAFT_2417 0.66 +1.1
589,688 - B158DRAFT_2417 0.66 +0.1
589,805 - -0.7
589,850 + -0.4
589,960 - -0.0

Or see this region's nucleotide sequence