Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2392

Experiment: m.b. Nickel (II) chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2390 and B158DRAFT_2391 are separated by 3 nucleotidesB158DRAFT_2391 and B158DRAFT_2392 are separated by 139 nucleotidesB158DRAFT_2392 and B158DRAFT_2393 are separated by 0 nucleotidesB158DRAFT_2393 and B158DRAFT_2394 are separated by 21 nucleotides B158DRAFT_2390: B158DRAFT_2390 - regulatory inactivation of DnaA Hda protein, at 559,888 to 560,577 _2390 B158DRAFT_2391: B158DRAFT_2391 - alkylhydroperoxidase AhpD family core domain, at 560,581 to 560,937 _2391 B158DRAFT_2392: B158DRAFT_2392 - Uncharacterized low-complexity proteins, at 561,077 to 562,828 _2392 B158DRAFT_2393: B158DRAFT_2393 - hypothetical protein, at 562,829 to 563,716 _2393 B158DRAFT_2394: B158DRAFT_2394 - diguanylate cyclase (GGDEF) domain, at 563,738 to 566,089 _2394 Position (kb) 561 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 560.610 kb on + strandat 560.667 kb on + strand, within B158DRAFT_2391at 560.694 kb on + strand, within B158DRAFT_2391at 560.705 kb on + strand, within B158DRAFT_2391at 560.708 kb on - strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.723 kb on - strand, within B158DRAFT_2391at 560.727 kb on + strand, within B158DRAFT_2391at 560.735 kb on - strand, within B158DRAFT_2391at 560.735 kb on - strand, within B158DRAFT_2391at 560.735 kb on - strand, within B158DRAFT_2391at 560.735 kb on - strand, within B158DRAFT_2391at 560.748 kb on + strand, within B158DRAFT_2391at 560.756 kb on - strand, within B158DRAFT_2391at 560.758 kb on + strand, within B158DRAFT_2391at 560.790 kb on + strand, within B158DRAFT_2391at 560.952 kb on + strandat 560.952 kb on - strandat 560.952 kb on - strandat 560.972 kb on - strandat 560.982 kb on + strandat 560.989 kb on - strandat 561.087 kb on + strandat 561.087 kb on + strandat 561.095 kb on - strandat 561.204 kb on + strandat 561.204 kb on + strandat 561.204 kb on + strandat 561.204 kb on + strandat 561.212 kb on - strandat 561.212 kb on - strandat 561.212 kb on - strandat 561.212 kb on - strandat 561.219 kb on + strandat 561.219 kb on + strandat 561.219 kb on + strandat 561.222 kb on - strandat 561.222 kb on - strandat 561.226 kb on - strandat 561.227 kb on - strandat 561.279 kb on + strand, within B158DRAFT_2392at 561.287 kb on - strand, within B158DRAFT_2392at 561.374 kb on + strand, within B158DRAFT_2392at 561.382 kb on - strand, within B158DRAFT_2392at 561.444 kb on + strand, within B158DRAFT_2392at 561.459 kb on + strand, within B158DRAFT_2392at 561.478 kb on + strand, within B158DRAFT_2392at 561.478 kb on + strand, within B158DRAFT_2392at 561.486 kb on - strand, within B158DRAFT_2392at 561.534 kb on + strand, within B158DRAFT_2392at 561.749 kb on + strand, within B158DRAFT_2392at 561.749 kb on + strand, within B158DRAFT_2392at 561.749 kb on + strand, within B158DRAFT_2392at 561.749 kb on + strand, within B158DRAFT_2392at 561.749 kb on + strand, within B158DRAFT_2392at 561.749 kb on + strand, within B158DRAFT_2392at 561.757 kb on - strand, within B158DRAFT_2392at 561.757 kb on - strand, within B158DRAFT_2392at 561.757 kb on - strand, within B158DRAFT_2392at 561.757 kb on - strand, within B158DRAFT_2392at 561.757 kb on - strand, within B158DRAFT_2392at 561.757 kb on - strand, within B158DRAFT_2392at 561.757 kb on - strand, within B158DRAFT_2392at 561.757 kb on - strand, within B158DRAFT_2392at 561.757 kb on - strand, within B158DRAFT_2392at 561.759 kb on + strand, within B158DRAFT_2392at 561.759 kb on + strand, within B158DRAFT_2392at 561.759 kb on + strand, within B158DRAFT_2392at 561.767 kb on - strand, within B158DRAFT_2392at 561.767 kb on - strand, within B158DRAFT_2392at 561.767 kb on - strand, within B158DRAFT_2392at 561.767 kb on - strand, within B158DRAFT_2392at 561.767 kb on - strand, within B158DRAFT_2392at 561.794 kb on + strand, within B158DRAFT_2392at 562.102 kb on + strand, within B158DRAFT_2392at 562.110 kb on - strand, within B158DRAFT_2392at 562.113 kb on + strand, within B158DRAFT_2392at 562.113 kb on + strand, within B158DRAFT_2392at 562.113 kb on + strand, within B158DRAFT_2392at 562.113 kb on + strand, within B158DRAFT_2392at 562.113 kb on + strand, within B158DRAFT_2392at 562.113 kb on + strand, within B158DRAFT_2392at 562.121 kb on - strand, within B158DRAFT_2392at 562.121 kb on - strand, within B158DRAFT_2392at 562.121 kb on - strand, within B158DRAFT_2392at 562.180 kb on - strand, within B158DRAFT_2392at 562.180 kb on - strand, within B158DRAFT_2392at 562.251 kb on + strand, within B158DRAFT_2392at 562.259 kb on - strand, within B158DRAFT_2392at 562.349 kb on + strand, within B158DRAFT_2392at 562.349 kb on + strand, within B158DRAFT_2392at 562.357 kb on - strand, within B158DRAFT_2392at 562.440 kb on - strand, within B158DRAFT_2392at 562.440 kb on - strand, within B158DRAFT_2392at 562.478 kb on + strand, within B158DRAFT_2392at 562.478 kb on + strand, within B158DRAFT_2392at 562.478 kb on + strand, within B158DRAFT_2392at 562.486 kb on - strand, within B158DRAFT_2392at 562.486 kb on - strand, within B158DRAFT_2392at 562.486 kb on - strand, within B158DRAFT_2392at 562.486 kb on - strand, within B158DRAFT_2392at 562.488 kb on + strand, within B158DRAFT_2392at 562.488 kb on + strand, within B158DRAFT_2392at 562.508 kb on + strand, within B158DRAFT_2392at 562.558 kb on + strand, within B158DRAFT_2392at 562.558 kb on + strand, within B158DRAFT_2392at 562.566 kb on - strand, within B158DRAFT_2392at 562.599 kb on - strand, within B158DRAFT_2392at 562.658 kb on + strandat 562.658 kb on + strandat 562.658 kb on + strandat 562.666 kb on - strandat 562.804 kb on - strandat 562.807 kb on + strandat 562.966 kb on + strand, within B158DRAFT_2393at 562.979 kb on - strand, within B158DRAFT_2393at 563.053 kb on + strand, within B158DRAFT_2393at 563.053 kb on + strand, within B158DRAFT_2393at 563.053 kb on + strand, within B158DRAFT_2393at 563.053 kb on + strand, within B158DRAFT_2393at 563.061 kb on - strand, within B158DRAFT_2393at 563.302 kb on + strand, within B158DRAFT_2393at 563.310 kb on - strand, within B158DRAFT_2393at 563.350 kb on - strand, within B158DRAFT_2393at 563.390 kb on - strand, within B158DRAFT_2393at 563.390 kb on - strand, within B158DRAFT_2393at 563.432 kb on - strand, within B158DRAFT_2393at 563.453 kb on - strand, within B158DRAFT_2393at 563.453 kb on - strand, within B158DRAFT_2393at 563.455 kb on + strand, within B158DRAFT_2393at 563.505 kb on - strand, within B158DRAFT_2393at 563.522 kb on + strand, within B158DRAFT_2393at 563.537 kb on + strand, within B158DRAFT_2393at 563.537 kb on + strand, within B158DRAFT_2393at 563.545 kb on - strand, within B158DRAFT_2393at 563.560 kb on + strand, within B158DRAFT_2393at 563.570 kb on - strand, within B158DRAFT_2393at 563.579 kb on + strand, within B158DRAFT_2393at 563.677 kb on + strandat 563.677 kb on + strandat 563.685 kb on - strandat 563.685 kb on - strandat 563.685 kb on - strandat 563.685 kb on - strandat 563.685 kb on - strandat 563.685 kb on - strandat 563.720 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
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560,610 + -0.1
560,667 + B158DRAFT_2391 0.24 -1.0
560,694 + B158DRAFT_2391 0.32 -0.4
560,705 + B158DRAFT_2391 0.35 +0.0
560,708 - B158DRAFT_2391 0.36 -0.1
560,715 + B158DRAFT_2391 0.38 +0.2
560,715 + B158DRAFT_2391 0.38 -0.3
560,715 + B158DRAFT_2391 0.38 -0.5
560,715 + B158DRAFT_2391 0.38 -0.2
560,715 + B158DRAFT_2391 0.38 -0.2
560,715 + B158DRAFT_2391 0.38 -0.1
560,715 + B158DRAFT_2391 0.38 +0.3
560,715 + B158DRAFT_2391 0.38 -0.7
560,723 - B158DRAFT_2391 0.40 -0.0
560,727 + B158DRAFT_2391 0.41 -0.0
560,735 - B158DRAFT_2391 0.43 -0.3
560,735 - B158DRAFT_2391 0.43 +0.1
560,735 - B158DRAFT_2391 0.43 -0.4
560,735 - B158DRAFT_2391 0.43 -0.3
560,748 + B158DRAFT_2391 0.47 -0.1
560,756 - B158DRAFT_2391 0.49 +1.1
560,758 + B158DRAFT_2391 0.50 +0.5
560,790 + B158DRAFT_2391 0.59 +0.2
560,952 + +1.1
560,952 - -0.2
560,952 - -0.1
560,972 - -0.2
560,982 + -0.0
560,989 - +0.3
561,087 + -1.9
561,087 + -2.0
561,095 - -1.9
561,204 + -1.6
561,204 + -2.7
561,204 + -1.9
561,204 + -2.4
561,212 - -2.7
561,212 - -2.2
561,212 - -2.9
561,212 - -2.5
561,219 + -2.3
561,219 + -3.5
561,219 + -1.9
561,222 - -2.9
561,222 - -2.6
561,226 - -1.6
561,227 - -2.0
561,279 + B158DRAFT_2392 0.12 -2.1
561,287 - B158DRAFT_2392 0.12 -2.1
561,374 + B158DRAFT_2392 0.17 -2.0
561,382 - B158DRAFT_2392 0.17 -0.8
561,444 + B158DRAFT_2392 0.21 -1.8
561,459 + B158DRAFT_2392 0.22 -1.9
561,478 + B158DRAFT_2392 0.23 -1.9
561,478 + B158DRAFT_2392 0.23 -2.5
561,486 - B158DRAFT_2392 0.23 -2.0
561,534 + B158DRAFT_2392 0.26 -1.7
561,749 + B158DRAFT_2392 0.38 -1.8
561,749 + B158DRAFT_2392 0.38 -2.4
561,749 + B158DRAFT_2392 0.38 -1.5
561,749 + B158DRAFT_2392 0.38 -2.4
561,749 + B158DRAFT_2392 0.38 -1.7
561,749 + B158DRAFT_2392 0.38 -2.9
561,757 - B158DRAFT_2392 0.39 -2.2
561,757 - B158DRAFT_2392 0.39 -1.6
561,757 - B158DRAFT_2392 0.39 -3.1
561,757 - B158DRAFT_2392 0.39 -2.0
561,757 - B158DRAFT_2392 0.39 -1.9
561,757 - B158DRAFT_2392 0.39 -1.6
561,757 - B158DRAFT_2392 0.39 -1.7
561,757 - B158DRAFT_2392 0.39 -2.1
561,757 - B158DRAFT_2392 0.39 -1.9
561,759 + B158DRAFT_2392 0.39 -2.0
561,759 + B158DRAFT_2392 0.39 -1.5
561,759 + B158DRAFT_2392 0.39 -0.9
561,767 - B158DRAFT_2392 0.39 -2.7
561,767 - B158DRAFT_2392 0.39 -0.9
561,767 - B158DRAFT_2392 0.39 -2.5
561,767 - B158DRAFT_2392 0.39 -1.7
561,767 - B158DRAFT_2392 0.39 -1.6
561,794 + B158DRAFT_2392 0.41 -2.1
562,102 + B158DRAFT_2392 0.59 -0.8
562,110 - B158DRAFT_2392 0.59 -2.1
562,113 + B158DRAFT_2392 0.59 -3.2
562,113 + B158DRAFT_2392 0.59 -1.3
562,113 + B158DRAFT_2392 0.59 -0.6
562,113 + B158DRAFT_2392 0.59 -1.5
562,113 + B158DRAFT_2392 0.59 -1.1
562,113 + B158DRAFT_2392 0.59 -1.9
562,121 - B158DRAFT_2392 0.60 +0.4
562,121 - B158DRAFT_2392 0.60 -1.5
562,121 - B158DRAFT_2392 0.60 -1.7
562,180 - B158DRAFT_2392 0.63 -2.9
562,180 - B158DRAFT_2392 0.63 -3.7
562,251 + B158DRAFT_2392 0.67 -1.0
562,259 - B158DRAFT_2392 0.67 -0.7
562,349 + B158DRAFT_2392 0.73 -2.3
562,349 + B158DRAFT_2392 0.73 -1.8
562,357 - B158DRAFT_2392 0.73 -0.6
562,440 - B158DRAFT_2392 0.78 -1.7
562,440 - B158DRAFT_2392 0.78 -1.7
562,478 + B158DRAFT_2392 0.80 -2.4
562,478 + B158DRAFT_2392 0.80 -1.9
562,478 + B158DRAFT_2392 0.80 -2.1
562,486 - B158DRAFT_2392 0.80 -2.1
562,486 - B158DRAFT_2392 0.80 -1.0
562,486 - B158DRAFT_2392 0.80 -2.5
562,486 - B158DRAFT_2392 0.80 -2.2
562,488 + B158DRAFT_2392 0.81 -2.4
562,488 + B158DRAFT_2392 0.81 -2.2
562,508 + B158DRAFT_2392 0.82 -3.1
562,558 + B158DRAFT_2392 0.85 -2.3
562,558 + B158DRAFT_2392 0.85 -2.2
562,566 - B158DRAFT_2392 0.85 -2.2
562,599 - B158DRAFT_2392 0.87 -3.3
562,658 + -2.6
562,658 + -2.0
562,658 + -1.9
562,666 - +0.8
562,804 - -0.4
562,807 + -0.3
562,966 + B158DRAFT_2393 0.15 +1.8
562,979 - B158DRAFT_2393 0.17 +0.5
563,053 + B158DRAFT_2393 0.25 -0.2
563,053 + B158DRAFT_2393 0.25 +0.0
563,053 + B158DRAFT_2393 0.25 +0.2
563,053 + B158DRAFT_2393 0.25 -0.7
563,061 - B158DRAFT_2393 0.26 -2.0
563,302 + B158DRAFT_2393 0.53 +0.2
563,310 - B158DRAFT_2393 0.54 +0.1
563,350 - B158DRAFT_2393 0.59 -0.5
563,390 - B158DRAFT_2393 0.63 +0.1
563,390 - B158DRAFT_2393 0.63 +0.3
563,432 - B158DRAFT_2393 0.68 -0.4
563,453 - B158DRAFT_2393 0.70 +0.4
563,453 - B158DRAFT_2393 0.70 -0.1
563,455 + B158DRAFT_2393 0.70 -0.0
563,505 - B158DRAFT_2393 0.76 -0.0
563,522 + B158DRAFT_2393 0.78 +2.0
563,537 + B158DRAFT_2393 0.80 -0.2
563,537 + B158DRAFT_2393 0.80 +0.2
563,545 - B158DRAFT_2393 0.81 +0.3
563,560 + B158DRAFT_2393 0.82 +0.3
563,570 - B158DRAFT_2393 0.83 +0.1
563,579 + B158DRAFT_2393 0.84 -0.1
563,677 + -0.5
563,677 + +0.1
563,685 - +0.2
563,685 - +0.3
563,685 - +0.4
563,685 - +0.1
563,685 - -0.1
563,685 - +0.5
563,720 - -0.2

Or see this region's nucleotide sequence