Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2239

Experiment: m.b. Nickel (II) chloride 1.25 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2238 and B158DRAFT_2239 are separated by 86 nucleotidesB158DRAFT_2239 and B158DRAFT_2240 are separated by 50 nucleotidesB158DRAFT_2240 and B158DRAFT_2241 are separated by 148 nucleotides B158DRAFT_2238: B158DRAFT_2238 - Small-conductance mechanosensitive channel, at 394,268 to 395,572 _2238 B158DRAFT_2239: B158DRAFT_2239 - peptide chain release factor 3, at 395,659 to 397,248 _2239 B158DRAFT_2240: B158DRAFT_2240 - Mg-dependent DNase, at 397,299 to 398,096 _2240 B158DRAFT_2241: B158DRAFT_2241 - Outer membrane cobalamin receptor protein, at 398,245 to 401,133 _2241 Position (kb) 395 396 397 398Strain fitness (log2 ratio) -1 0 1 2at 394.665 kb on + strand, within B158DRAFT_2238at 394.688 kb on + strand, within B158DRAFT_2238at 394.720 kb on - strand, within B158DRAFT_2238at 394.768 kb on + strand, within B158DRAFT_2238at 394.786 kb on + strand, within B158DRAFT_2238at 394.794 kb on + strand, within B158DRAFT_2238at 394.794 kb on + strand, within B158DRAFT_2238at 394.807 kb on - strand, within B158DRAFT_2238at 394.821 kb on - strand, within B158DRAFT_2238at 394.952 kb on + strand, within B158DRAFT_2238at 394.969 kb on + strand, within B158DRAFT_2238at 395.028 kb on + strand, within B158DRAFT_2238at 395.028 kb on + strand, within B158DRAFT_2238at 395.035 kb on + strand, within B158DRAFT_2238at 395.053 kb on + strand, within B158DRAFT_2238at 395.061 kb on - strand, within B158DRAFT_2238at 395.061 kb on - strand, within B158DRAFT_2238at 395.074 kb on - strand, within B158DRAFT_2238at 395.095 kb on - strand, within B158DRAFT_2238at 395.142 kb on + strand, within B158DRAFT_2238at 395.300 kb on + strand, within B158DRAFT_2238at 395.308 kb on - strand, within B158DRAFT_2238at 395.331 kb on - strand, within B158DRAFT_2238at 395.451 kb on + strandat 395.451 kb on + strandat 395.478 kb on + strandat 395.492 kb on + strandat 395.492 kb on + strandat 395.584 kb on - strandat 395.584 kb on - strandat 395.591 kb on - strandat 395.591 kb on - strandat 395.620 kb on + strandat 395.669 kb on - strandat 395.693 kb on - strandat 395.761 kb on + strandat 395.761 kb on + strandat 395.781 kb on + strandat 395.785 kb on + strandat 395.808 kb on - strandat 395.828 kb on - strand, within B158DRAFT_2239at 395.837 kb on + strand, within B158DRAFT_2239at 395.837 kb on + strand, within B158DRAFT_2239at 395.845 kb on - strand, within B158DRAFT_2239at 395.889 kb on + strand, within B158DRAFT_2239at 395.894 kb on - strand, within B158DRAFT_2239at 395.943 kb on - strand, within B158DRAFT_2239at 395.958 kb on - strand, within B158DRAFT_2239at 396.006 kb on + strand, within B158DRAFT_2239at 396.006 kb on + strand, within B158DRAFT_2239at 396.006 kb on + strand, within B158DRAFT_2239at 396.014 kb on - strand, within B158DRAFT_2239at 396.014 kb on - strand, within B158DRAFT_2239at 396.014 kb on - strand, within B158DRAFT_2239at 396.014 kb on - strand, within B158DRAFT_2239at 396.037 kb on - strand, within B158DRAFT_2239at 396.065 kb on + strand, within B158DRAFT_2239at 396.065 kb on - strand, within B158DRAFT_2239at 396.168 kb on + strand, within B158DRAFT_2239at 396.187 kb on + strand, within B158DRAFT_2239at 396.195 kb on + strand, within B158DRAFT_2239at 396.195 kb on + strand, within B158DRAFT_2239at 396.195 kb on + strand, within B158DRAFT_2239at 396.195 kb on + strand, within B158DRAFT_2239at 396.195 kb on + strand, within B158DRAFT_2239at 396.195 kb on + strand, within B158DRAFT_2239at 396.195 kb on + strand, within B158DRAFT_2239at 396.195 kb on - strand, within B158DRAFT_2239at 396.203 kb on - strand, within B158DRAFT_2239at 396.203 kb on - strand, within B158DRAFT_2239at 396.211 kb on - strand, within B158DRAFT_2239at 396.250 kb on - strand, within B158DRAFT_2239at 396.269 kb on - strand, within B158DRAFT_2239at 396.271 kb on - strand, within B158DRAFT_2239at 396.278 kb on + strand, within B158DRAFT_2239at 396.286 kb on + strand, within B158DRAFT_2239at 396.294 kb on - strand, within B158DRAFT_2239at 396.346 kb on + strand, within B158DRAFT_2239at 396.357 kb on + strand, within B158DRAFT_2239at 396.474 kb on + strand, within B158DRAFT_2239at 396.482 kb on - strand, within B158DRAFT_2239at 396.493 kb on + strand, within B158DRAFT_2239at 396.501 kb on - strand, within B158DRAFT_2239at 396.516 kb on - strand, within B158DRAFT_2239at 396.517 kb on + strand, within B158DRAFT_2239at 396.521 kb on + strand, within B158DRAFT_2239at 396.524 kb on - strand, within B158DRAFT_2239at 396.524 kb on - strand, within B158DRAFT_2239at 396.589 kb on - strand, within B158DRAFT_2239at 396.641 kb on - strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.691 kb on + strand, within B158DRAFT_2239at 396.699 kb on - strand, within B158DRAFT_2239at 396.699 kb on - strand, within B158DRAFT_2239at 396.699 kb on - strand, within B158DRAFT_2239at 396.731 kb on - strand, within B158DRAFT_2239at 396.742 kb on + strand, within B158DRAFT_2239at 396.816 kb on + strand, within B158DRAFT_2239at 396.816 kb on + strand, within B158DRAFT_2239at 396.824 kb on - strand, within B158DRAFT_2239at 396.844 kb on + strand, within B158DRAFT_2239at 396.874 kb on + strand, within B158DRAFT_2239at 396.931 kb on + strand, within B158DRAFT_2239at 396.944 kb on - strand, within B158DRAFT_2239at 396.975 kb on - strand, within B158DRAFT_2239at 396.993 kb on - strand, within B158DRAFT_2239at 397.000 kb on - strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.076 kb on + strand, within B158DRAFT_2239at 397.081 kb on - strand, within B158DRAFT_2239at 397.084 kb on - strand, within B158DRAFT_2239at 397.100 kb on + strandat 397.108 kb on - strandat 397.138 kb on + strandat 397.146 kb on - strandat 397.155 kb on + strandat 397.155 kb on + strandat 397.209 kb on - strandat 397.211 kb on + strandat 397.211 kb on + strandat 397.219 kb on - strandat 397.219 kb on - strandat 397.219 kb on - strandat 397.266 kb on - strandat 397.283 kb on + strandat 397.291 kb on - strandat 397.309 kb on - strandat 397.309 kb on - strandat 397.313 kb on + strandat 397.361 kb on - strandat 397.361 kb on - strandat 397.361 kb on - strandat 397.379 kb on + strand, within B158DRAFT_2240at 397.400 kb on - strand, within B158DRAFT_2240at 397.451 kb on + strand, within B158DRAFT_2240at 397.628 kb on + strand, within B158DRAFT_2240at 397.683 kb on + strand, within B158DRAFT_2240at 397.755 kb on + strand, within B158DRAFT_2240at 397.763 kb on - strand, within B158DRAFT_2240at 397.763 kb on - strand, within B158DRAFT_2240at 397.809 kb on - strand, within B158DRAFT_2240at 397.811 kb on + strand, within B158DRAFT_2240at 397.819 kb on - strand, within B158DRAFT_2240at 397.819 kb on - strand, within B158DRAFT_2240at 397.819 kb on - strand, within B158DRAFT_2240at 397.856 kb on + strand, within B158DRAFT_2240at 397.856 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.857 kb on + strand, within B158DRAFT_2240at 397.864 kb on - strand, within B158DRAFT_2240at 397.864 kb on - strand, within B158DRAFT_2240at 397.864 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.865 kb on - strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.876 kb on + strand, within B158DRAFT_2240at 397.884 kb on - strand, within B158DRAFT_2240at 397.952 kb on - strand, within B158DRAFT_2240at 397.983 kb on + strand, within B158DRAFT_2240at 397.991 kb on - strand, within B158DRAFT_2240at 397.991 kb on - strand, within B158DRAFT_2240at 398.078 kb on + strandat 398.156 kb on - strandat 398.156 kb on - strandat 398.185 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
remove
394,665 + B158DRAFT_2238 0.30 -0.5
394,688 + B158DRAFT_2238 0.32 +0.0
394,720 - B158DRAFT_2238 0.35 +0.1
394,768 + B158DRAFT_2238 0.38 -0.1
394,786 + B158DRAFT_2238 0.40 +0.3
394,794 + B158DRAFT_2238 0.40 -1.3
394,794 + B158DRAFT_2238 0.40 +0.3
394,807 - B158DRAFT_2238 0.41 +0.7
394,821 - B158DRAFT_2238 0.42 -0.2
394,952 + B158DRAFT_2238 0.52 -0.2
394,969 + B158DRAFT_2238 0.54 -0.3
395,028 + B158DRAFT_2238 0.58 +0.6
395,028 + B158DRAFT_2238 0.58 +0.1
395,035 + B158DRAFT_2238 0.59 +0.5
395,053 + B158DRAFT_2238 0.60 +0.8
395,061 - B158DRAFT_2238 0.61 +0.6
395,061 - B158DRAFT_2238 0.61 -0.7
395,074 - B158DRAFT_2238 0.62 +0.0
395,095 - B158DRAFT_2238 0.63 +0.0
395,142 + B158DRAFT_2238 0.67 +0.2
395,300 + B158DRAFT_2238 0.79 +0.0
395,308 - B158DRAFT_2238 0.80 +0.2
395,331 - B158DRAFT_2238 0.81 -0.4
395,451 + -0.3
395,451 + +0.1
395,478 + -0.9
395,492 + +0.0
395,492 + +0.8
395,584 - -1.6
395,584 - +0.1
395,591 - -0.3
395,591 - -0.6
395,620 + -0.6
395,669 - +0.4
395,693 - +0.5
395,761 + +1.1
395,761 + +0.8
395,781 + +0.7
395,785 + +0.7
395,808 - +0.5
395,828 - B158DRAFT_2239 0.11 +0.1
395,837 + B158DRAFT_2239 0.11 +0.3
395,837 + B158DRAFT_2239 0.11 +0.4
395,845 - B158DRAFT_2239 0.12 +0.5
395,889 + B158DRAFT_2239 0.14 +0.6
395,894 - B158DRAFT_2239 0.15 +0.8
395,943 - B158DRAFT_2239 0.18 +0.5
395,958 - B158DRAFT_2239 0.19 +0.5
396,006 + B158DRAFT_2239 0.22 +0.3
396,006 + B158DRAFT_2239 0.22 +0.3
396,006 + B158DRAFT_2239 0.22 +0.4
396,014 - B158DRAFT_2239 0.22 +0.5
396,014 - B158DRAFT_2239 0.22 +0.6
396,014 - B158DRAFT_2239 0.22 -0.3
396,014 - B158DRAFT_2239 0.22 +0.2
396,037 - B158DRAFT_2239 0.24 +0.3
396,065 + B158DRAFT_2239 0.26 +0.5
396,065 - B158DRAFT_2239 0.26 +0.8
396,168 + B158DRAFT_2239 0.32 +0.3
396,187 + B158DRAFT_2239 0.33 +0.1
396,195 + B158DRAFT_2239 0.34 +0.1
396,195 + B158DRAFT_2239 0.34 -0.2
396,195 + B158DRAFT_2239 0.34 -0.0
396,195 + B158DRAFT_2239 0.34 +0.4
396,195 + B158DRAFT_2239 0.34 -0.1
396,195 + B158DRAFT_2239 0.34 +1.0
396,195 + B158DRAFT_2239 0.34 +0.9
396,195 - B158DRAFT_2239 0.34 +1.4
396,203 - B158DRAFT_2239 0.34 +0.7
396,203 - B158DRAFT_2239 0.34 +0.1
396,211 - B158DRAFT_2239 0.35 +0.6
396,250 - B158DRAFT_2239 0.37 -0.5
396,269 - B158DRAFT_2239 0.38 +0.4
396,271 - B158DRAFT_2239 0.38 +0.0
396,278 + B158DRAFT_2239 0.39 +0.5
396,286 + B158DRAFT_2239 0.39 +0.9
396,294 - B158DRAFT_2239 0.40 +0.4
396,346 + B158DRAFT_2239 0.43 -0.0
396,357 + B158DRAFT_2239 0.44 +0.4
396,474 + B158DRAFT_2239 0.51 +0.5
396,482 - B158DRAFT_2239 0.52 +0.6
396,493 + B158DRAFT_2239 0.52 +0.6
396,501 - B158DRAFT_2239 0.53 -0.1
396,516 - B158DRAFT_2239 0.54 +0.7
396,517 + B158DRAFT_2239 0.54 +0.7
396,521 + B158DRAFT_2239 0.54 +0.0
396,524 - B158DRAFT_2239 0.54 +0.8
396,524 - B158DRAFT_2239 0.54 -0.3
396,589 - B158DRAFT_2239 0.58 +2.4
396,641 - B158DRAFT_2239 0.62 +0.3
396,691 + B158DRAFT_2239 0.65 +1.2
396,691 + B158DRAFT_2239 0.65 +0.7
396,691 + B158DRAFT_2239 0.65 +0.4
396,691 + B158DRAFT_2239 0.65 +0.3
396,699 - B158DRAFT_2239 0.65 +0.3
396,699 - B158DRAFT_2239 0.65 +0.1
396,699 - B158DRAFT_2239 0.65 +1.1
396,731 - B158DRAFT_2239 0.67 +0.2
396,742 + B158DRAFT_2239 0.68 +0.9
396,816 + B158DRAFT_2239 0.73 -0.5
396,816 + B158DRAFT_2239 0.73 +0.5
396,824 - B158DRAFT_2239 0.73 +0.3
396,844 + B158DRAFT_2239 0.75 -0.5
396,874 + B158DRAFT_2239 0.76 +0.6
396,931 + B158DRAFT_2239 0.80 +0.4
396,944 - B158DRAFT_2239 0.81 -0.0
396,975 - B158DRAFT_2239 0.83 +0.2
396,993 - B158DRAFT_2239 0.84 +0.8
397,000 - B158DRAFT_2239 0.84 +0.3
397,076 + B158DRAFT_2239 0.89 +0.8
397,076 + B158DRAFT_2239 0.89 +0.6
397,076 + B158DRAFT_2239 0.89 +0.5
397,076 + B158DRAFT_2239 0.89 +0.2
397,081 - B158DRAFT_2239 0.89 +0.4
397,084 - B158DRAFT_2239 0.90 +0.1
397,100 + +0.5
397,108 - +0.6
397,138 + +0.8
397,146 - +1.6
397,155 + +1.2
397,155 + +0.9
397,209 - +0.0
397,211 + -0.3
397,211 + +0.5
397,219 - +0.7
397,219 - +0.3
397,219 - +0.9
397,266 - +1.0
397,283 + -0.0
397,291 - +0.3
397,309 - -0.1
397,309 - -0.3
397,313 + -0.2
397,361 - -0.0
397,361 - -0.1
397,361 - -1.4
397,379 + B158DRAFT_2240 0.10 -0.1
397,400 - B158DRAFT_2240 0.13 -0.2
397,451 + B158DRAFT_2240 0.19 -0.1
397,628 + B158DRAFT_2240 0.41 +0.1
397,683 + B158DRAFT_2240 0.48 +0.2
397,755 + B158DRAFT_2240 0.57 +0.8
397,763 - B158DRAFT_2240 0.58 +0.3
397,763 - B158DRAFT_2240 0.58 -0.5
397,809 - B158DRAFT_2240 0.64 +1.4
397,811 + B158DRAFT_2240 0.64 -0.1
397,819 - B158DRAFT_2240 0.65 +0.3
397,819 - B158DRAFT_2240 0.65 +0.1
397,819 - B158DRAFT_2240 0.65 -0.6
397,856 + B158DRAFT_2240 0.70 -0.4
397,856 + B158DRAFT_2240 0.70 -0.9
397,857 + B158DRAFT_2240 0.70 -0.1
397,857 + B158DRAFT_2240 0.70 +0.0
397,857 + B158DRAFT_2240 0.70 +0.0
397,857 + B158DRAFT_2240 0.70 +0.4
397,857 + B158DRAFT_2240 0.70 -0.7
397,857 + B158DRAFT_2240 0.70 -0.4
397,857 + B158DRAFT_2240 0.70 -0.5
397,864 - B158DRAFT_2240 0.71 +0.2
397,864 - B158DRAFT_2240 0.71 +0.3
397,864 - B158DRAFT_2240 0.71 +0.8
397,865 - B158DRAFT_2240 0.71 -0.3
397,865 - B158DRAFT_2240 0.71 -0.0
397,865 - B158DRAFT_2240 0.71 -0.2
397,865 - B158DRAFT_2240 0.71 +0.5
397,876 + B158DRAFT_2240 0.72 +0.2
397,876 + B158DRAFT_2240 0.72 +0.0
397,876 + B158DRAFT_2240 0.72 -0.2
397,876 + B158DRAFT_2240 0.72 +0.4
397,884 - B158DRAFT_2240 0.73 +0.1
397,952 - B158DRAFT_2240 0.82 +0.3
397,983 + B158DRAFT_2240 0.86 -0.2
397,991 - B158DRAFT_2240 0.87 +0.1
397,991 - B158DRAFT_2240 0.87 +0.3
398,078 + +0.1
398,156 - -0.2
398,156 - +0.2
398,185 + +0.4

Or see this region's nucleotide sequence