Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1747

Experiment: m.b. Nickel (II) chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1745 and B158DRAFT_1746 are separated by 27 nucleotidesB158DRAFT_1746 and B158DRAFT_1747 are separated by 57 nucleotidesB158DRAFT_1747 and B158DRAFT_1748 overlap by 4 nucleotidesB158DRAFT_1748 and B158DRAFT_1749 are separated by 6 nucleotides B158DRAFT_1745: B158DRAFT_1745 - hydrolase, TatD family, at 1,829,261 to 1,830,055 _1745 B158DRAFT_1746: B158DRAFT_1746 - Tfp pilus assembly protein PilZ, at 1,830,083 to 1,830,433 _1746 B158DRAFT_1747: B158DRAFT_1747 - DNA polymerase III, delta' subunit, at 1,830,491 to 1,831,489 _1747 B158DRAFT_1748: B158DRAFT_1748 - thymidylate kinase, at 1,831,486 to 1,832,145 _1748 B158DRAFT_1749: B158DRAFT_1749 - conserved hypothetical protein, YceG family, at 1,832,152 to 1,833,156 _1749 Position (kb) 1830 1831 1832Strain fitness (log2 ratio) -2 -1 0 1at 1829.543 kb on + strand, within B158DRAFT_1745at 1829.551 kb on - strand, within B158DRAFT_1745at 1829.575 kb on + strand, within B158DRAFT_1745at 1829.575 kb on + strand, within B158DRAFT_1745at 1829.575 kb on + strand, within B158DRAFT_1745at 1829.583 kb on - strand, within B158DRAFT_1745at 1829.583 kb on - strand, within B158DRAFT_1745at 1829.585 kb on + strand, within B158DRAFT_1745at 1829.585 kb on + strand, within B158DRAFT_1745at 1829.593 kb on - strand, within B158DRAFT_1745at 1829.593 kb on - strand, within B158DRAFT_1745at 1829.593 kb on - strand, within B158DRAFT_1745at 1829.593 kb on - strand, within B158DRAFT_1745at 1829.593 kb on - strand, within B158DRAFT_1745at 1829.647 kb on - strand, within B158DRAFT_1745at 1829.657 kb on + strand, within B158DRAFT_1745at 1829.657 kb on + strand, within B158DRAFT_1745at 1829.765 kb on - strand, within B158DRAFT_1745at 1829.790 kb on + strand, within B158DRAFT_1745at 1829.822 kb on + strand, within B158DRAFT_1745at 1829.829 kb on - strand, within B158DRAFT_1745at 1829.850 kb on - strand, within B158DRAFT_1745at 1829.869 kb on - strand, within B158DRAFT_1745at 1829.919 kb on + strand, within B158DRAFT_1745at 1829.919 kb on + strand, within B158DRAFT_1745at 1829.927 kb on - strand, within B158DRAFT_1745at 1829.937 kb on - strand, within B158DRAFT_1745at 1829.937 kb on - strand, within B158DRAFT_1745at 1829.951 kb on - strand, within B158DRAFT_1745at 1829.953 kb on + strand, within B158DRAFT_1745at 1829.978 kb on + strandat 1829.978 kb on + strandat 1829.985 kb on + strandat 1830.016 kb on + strandat 1830.016 kb on + strandat 1830.024 kb on - strandat 1830.028 kb on + strandat 1830.046 kb on - strandat 1830.080 kb on + strandat 1830.088 kb on - strandat 1830.305 kb on + strand, within B158DRAFT_1746at 1830.412 kb on + strandat 1831.504 kb on - strandat 1832.178 kb on - strandat 1832.178 kb on - strandat 1832.178 kb on - strandat 1832.283 kb on - strand, within B158DRAFT_1749at 1832.337 kb on - strand, within B158DRAFT_1749at 1832.339 kb on - strand, within B158DRAFT_1749at 1832.350 kb on - strand, within B158DRAFT_1749at 1832.443 kb on - strand, within B158DRAFT_1749at 1832.455 kb on - strand, within B158DRAFT_1749

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
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1,829,543 + B158DRAFT_1745 0.35 -0.8
1,829,551 - B158DRAFT_1745 0.36 +0.1
1,829,575 + B158DRAFT_1745 0.39 +0.0
1,829,575 + B158DRAFT_1745 0.39 +0.0
1,829,575 + B158DRAFT_1745 0.39 -0.8
1,829,583 - B158DRAFT_1745 0.41 -0.6
1,829,583 - B158DRAFT_1745 0.41 +0.3
1,829,585 + B158DRAFT_1745 0.41 -0.6
1,829,585 + B158DRAFT_1745 0.41 +0.1
1,829,593 - B158DRAFT_1745 0.42 -0.4
1,829,593 - B158DRAFT_1745 0.42 -0.2
1,829,593 - B158DRAFT_1745 0.42 +0.3
1,829,593 - B158DRAFT_1745 0.42 -0.1
1,829,593 - B158DRAFT_1745 0.42 -0.4
1,829,647 - B158DRAFT_1745 0.49 +0.1
1,829,657 + B158DRAFT_1745 0.50 -0.2
1,829,657 + B158DRAFT_1745 0.50 -0.4
1,829,765 - B158DRAFT_1745 0.63 -0.5
1,829,790 + B158DRAFT_1745 0.67 -0.2
1,829,822 + B158DRAFT_1745 0.71 -0.1
1,829,829 - B158DRAFT_1745 0.71 +0.5
1,829,850 - B158DRAFT_1745 0.74 -0.2
1,829,869 - B158DRAFT_1745 0.76 +0.1
1,829,919 + B158DRAFT_1745 0.83 -0.3
1,829,919 + B158DRAFT_1745 0.83 +0.0
1,829,927 - B158DRAFT_1745 0.84 -0.2
1,829,937 - B158DRAFT_1745 0.85 +0.1
1,829,937 - B158DRAFT_1745 0.85 +0.7
1,829,951 - B158DRAFT_1745 0.87 -0.9
1,829,953 + B158DRAFT_1745 0.87 +0.2
1,829,978 + +0.6
1,829,978 + -0.3
1,829,985 + -0.3
1,830,016 + +0.0
1,830,016 + +0.0
1,830,024 - -0.6
1,830,028 + +0.2
1,830,046 - -0.4
1,830,080 + +0.2
1,830,088 - +0.3
1,830,305 + B158DRAFT_1746 0.63 +0.8
1,830,412 + +0.4
1,831,504 - -0.3
1,832,178 - -1.0
1,832,178 - -2.2
1,832,178 - -1.5
1,832,283 - B158DRAFT_1749 0.13 -1.3
1,832,337 - B158DRAFT_1749 0.18 -1.3
1,832,339 - B158DRAFT_1749 0.19 -2.6
1,832,350 - B158DRAFT_1749 0.20 -0.9
1,832,443 - B158DRAFT_1749 0.29 -1.2
1,832,455 - B158DRAFT_1749 0.30 -2.3

Or see this region's nucleotide sequence