Experiment: m.b. Nickel (II) chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0969 and B158DRAFT_0970 are separated by 139 nucleotides B158DRAFT_0970 and B158DRAFT_0971 overlap by 4 nucleotides B158DRAFT_0971 and B158DRAFT_0972 are separated by 29 nucleotides B158DRAFT_0972 and B158DRAFT_0973 are separated by 37 nucleotides
B158DRAFT_0969: B158DRAFT_0969 - SsrA-binding protein, at 1,001,066 to 1,001,539
_0969
B158DRAFT_0970: B158DRAFT_0970 - Oligoketide cyclase/lipid transport protein, at 1,001,679 to 1,002,113
_0970
B158DRAFT_0971: B158DRAFT_0971 - Uncharacterized protein conserved in bacteria, at 1,002,110 to 1,002,403
_0971
B158DRAFT_0972: B158DRAFT_0972 - 3-deoxy-D-manno-octulosonic-acid transferase, at 1,002,433 to 1,003,680
_0972
B158DRAFT_0973: B158DRAFT_0973 - type I secretion outer membrane protein, TolC family, at 1,003,718 to 1,005,091
_0973
Position (kb)
1002
1003
1004 Strain fitness (log2 ratio)
-6
-5
-4
-3
-2
-1
0
1
2 at 1001.474 kb on + strand, within B158DRAFT_0969 at 1001.474 kb on + strand, within B158DRAFT_0969 at 1001.482 kb on - strand, within B158DRAFT_0969 at 1001.482 kb on - strand, within B158DRAFT_0969 at 1001.487 kb on + strand, within B158DRAFT_0969 at 1001.495 kb on - strand at 1001.495 kb on - strand at 1001.523 kb on + strand at 1001.579 kb on + strand at 1001.610 kb on - strand at 1001.632 kb on + strand at 1002.088 kb on + strand at 1002.088 kb on + strand at 1002.088 kb on + strand at 1002.088 kb on + strand at 1002.098 kb on + strand at 1002.098 kb on + strand at 1002.098 kb on + strand at 1002.098 kb on + strand at 1002.098 kb on + strand at 1003.724 kb on - strand at 1003.724 kb on - strand at 1003.782 kb on + strand at 1003.797 kb on - strand at 1003.848 kb on - strand at 1003.848 kb on - strand at 1003.918 kb on + strand, within B158DRAFT_0973 at 1003.918 kb on + strand, within B158DRAFT_0973 at 1003.926 kb on - strand, within B158DRAFT_0973 at 1003.987 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.999 kb on - strand, within B158DRAFT_0973 at 1004.035 kb on + strand, within B158DRAFT_0973 at 1004.039 kb on - strand, within B158DRAFT_0973 at 1004.094 kb on + strand, within B158DRAFT_0973 at 1004.094 kb on + strand, within B158DRAFT_0973 at 1004.165 kb on + strand, within B158DRAFT_0973 at 1004.173 kb on - strand, within B158DRAFT_0973 at 1004.173 kb on - strand, within B158DRAFT_0973 at 1004.173 kb on - strand, within B158DRAFT_0973 at 1004.223 kb on - strand, within B158DRAFT_0973 at 1004.223 kb on - strand, within B158DRAFT_0973 at 1004.231 kb on + strand, within B158DRAFT_0973 at 1004.231 kb on + strand, within B158DRAFT_0973 at 1004.239 kb on - strand, within B158DRAFT_0973 at 1004.241 kb on + strand, within B158DRAFT_0973 at 1004.254 kb on - strand, within B158DRAFT_0973 at 1004.310 kb on + strand, within B158DRAFT_0973 at 1004.310 kb on + strand, within B158DRAFT_0973 at 1004.444 kb on + strand, within B158DRAFT_0973 at 1004.446 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on - strand, within B158DRAFT_0973 at 1004.462 kb on - strand, within B158DRAFT_0973 at 1004.462 kb on - strand, within B158DRAFT_0973 at 1004.489 kb on + strand, within B158DRAFT_0973 at 1004.497 kb on - strand, within B158DRAFT_0973 at 1004.505 kb on + strand, within B158DRAFT_0973 at 1004.538 kb on + strand, within B158DRAFT_0973 at 1004.546 kb on - strand, within B158DRAFT_0973 at 1004.546 kb on - strand, within B158DRAFT_0973 at 1004.546 kb on - strand, within B158DRAFT_0973 at 1004.592 kb on - strand, within B158DRAFT_0973 at 1004.651 kb on + strand, within B158DRAFT_0973 at 1004.651 kb on + strand, within B158DRAFT_0973
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM remove 1,001,474 + B158DRAFT_0969 0.86 -1.7 1,001,474 + B158DRAFT_0969 0.86 +2.1 1,001,482 - B158DRAFT_0969 0.88 +0.0 1,001,482 - B158DRAFT_0969 0.88 -1.4 1,001,487 + B158DRAFT_0969 0.89 +1.5 1,001,495 - +0.8 1,001,495 - +0.8 1,001,523 + -0.0 1,001,579 + +1.0 1,001,610 - -0.0 1,001,632 + -2.9 1,002,088 + -0.8 1,002,088 + -4.0 1,002,088 + -3.3 1,002,088 + -1.6 1,002,098 + -1.1 1,002,098 + -0.7 1,002,098 + -2.3 1,002,098 + -2.7 1,002,098 + -1.7 1,003,724 - -0.6 1,003,724 - -0.2 1,003,782 + -3.5 1,003,797 - -3.4 1,003,848 - -2.5 1,003,848 - -3.9 1,003,918 + B158DRAFT_0973 0.15 -3.5 1,003,918 + B158DRAFT_0973 0.15 -3.8 1,003,926 - B158DRAFT_0973 0.15 -4.3 1,003,987 + B158DRAFT_0973 0.20 -3.9 1,003,991 + B158DRAFT_0973 0.20 -4.4 1,003,991 + B158DRAFT_0973 0.20 -5.7 1,003,991 + B158DRAFT_0973 0.20 -5.0 1,003,991 + B158DRAFT_0973 0.20 -4.7 1,003,991 + B158DRAFT_0973 0.20 -4.4 1,003,999 - B158DRAFT_0973 0.20 -4.0 1,004,035 + B158DRAFT_0973 0.23 -4.0 1,004,039 - B158DRAFT_0973 0.23 -4.3 1,004,094 + B158DRAFT_0973 0.27 -3.7 1,004,094 + B158DRAFT_0973 0.27 -2.9 1,004,165 + B158DRAFT_0973 0.33 -3.9 1,004,173 - B158DRAFT_0973 0.33 -3.8 1,004,173 - B158DRAFT_0973 0.33 -2.2 1,004,173 - B158DRAFT_0973 0.33 -4.5 1,004,223 - B158DRAFT_0973 0.37 -2.7 1,004,223 - B158DRAFT_0973 0.37 -3.3 1,004,231 + B158DRAFT_0973 0.37 -2.0 1,004,231 + B158DRAFT_0973 0.37 -4.5 1,004,239 - B158DRAFT_0973 0.38 -6.4 1,004,241 + B158DRAFT_0973 0.38 -2.2 1,004,254 - B158DRAFT_0973 0.39 -3.3 1,004,310 + B158DRAFT_0973 0.43 -3.3 1,004,310 + B158DRAFT_0973 0.43 -4.5 1,004,444 + B158DRAFT_0973 0.53 -4.5 1,004,446 + B158DRAFT_0973 0.53 -2.0 1,004,454 + B158DRAFT_0973 0.54 -0.2 1,004,454 + B158DRAFT_0973 0.54 -3.1 1,004,454 + B158DRAFT_0973 0.54 -5.1 1,004,454 - B158DRAFT_0973 0.54 -2.0 1,004,462 - B158DRAFT_0973 0.54 -4.9 1,004,462 - B158DRAFT_0973 0.54 -3.4 1,004,489 + B158DRAFT_0973 0.56 -2.9 1,004,497 - B158DRAFT_0973 0.57 -2.8 1,004,505 + B158DRAFT_0973 0.57 -3.0 1,004,538 + B158DRAFT_0973 0.60 -2.8 1,004,546 - B158DRAFT_0973 0.60 -4.5 1,004,546 - B158DRAFT_0973 0.60 -4.0 1,004,546 - B158DRAFT_0973 0.60 -1.5 1,004,592 - B158DRAFT_0973 0.64 -4.0 1,004,651 + B158DRAFT_0973 0.68 -4.8 1,004,651 + B158DRAFT_0973 0.68 -4.4
Or see this region's nucleotide sequence