Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0054

Experiment: m.b. Nickel (II) chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0052 and B158DRAFT_0053 are separated by 102 nucleotidesB158DRAFT_0053 and B158DRAFT_0054 are separated by 229 nucleotidesB158DRAFT_0054 and B158DRAFT_0055 are separated by 10 nucleotidesB158DRAFT_0055 and B158DRAFT_0056 are separated by 213 nucleotides B158DRAFT_0052: B158DRAFT_0052 - hypothetical protein, at 48,995 to 49,813 _0052 B158DRAFT_0053: B158DRAFT_0053 - Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases, at 49,916 to 50,233 _0053 B158DRAFT_0054: B158DRAFT_0054 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 50,463 to 53,075 _0054 B158DRAFT_0055: B158DRAFT_0055 - sugar fermentation stimulation protein, at 53,086 to 53,811 _0055 B158DRAFT_0056: B158DRAFT_0056 - transcriptional regulator, TraR/DksA family, at 54,025 to 54,471 _0056 Position (kb) 50 51 52 53 54Strain fitness (log2 ratio) -2 -1 0 1at 49.498 kb on + strand, within B158DRAFT_0052at 49.508 kb on - strand, within B158DRAFT_0052at 49.562 kb on + strand, within B158DRAFT_0052at 49.584 kb on + strand, within B158DRAFT_0052at 49.736 kb on - strandat 49.738 kb on + strandat 49.799 kb on + strandat 49.807 kb on - strandat 49.906 kb on - strandat 49.957 kb on + strand, within B158DRAFT_0053at 49.957 kb on + strand, within B158DRAFT_0053at 49.957 kb on + strand, within B158DRAFT_0053at 49.957 kb on + strand, within B158DRAFT_0053at 49.964 kb on + strand, within B158DRAFT_0053at 49.965 kb on - strand, within B158DRAFT_0053at 49.965 kb on - strand, within B158DRAFT_0053at 49.965 kb on - strand, within B158DRAFT_0053at 49.965 kb on - strand, within B158DRAFT_0053at 49.972 kb on - strand, within B158DRAFT_0053at 49.979 kb on + strand, within B158DRAFT_0053at 50.054 kb on + strand, within B158DRAFT_0053at 50.077 kb on + strand, within B158DRAFT_0053at 50.077 kb on + strand, within B158DRAFT_0053at 50.077 kb on + strand, within B158DRAFT_0053at 50.077 kb on + strand, within B158DRAFT_0053at 50.077 kb on + strand, within B158DRAFT_0053at 50.085 kb on - strand, within B158DRAFT_0053at 50.085 kb on - strand, within B158DRAFT_0053at 50.085 kb on - strand, within B158DRAFT_0053at 50.099 kb on + strand, within B158DRAFT_0053at 50.117 kb on - strand, within B158DRAFT_0053at 50.117 kb on - strand, within B158DRAFT_0053at 50.243 kb on - strandat 50.269 kb on + strandat 50.277 kb on + strandat 50.278 kb on + strandat 50.286 kb on - strandat 50.401 kb on + strandat 50.409 kb on + strandat 50.417 kb on - strandat 50.504 kb on + strandat 50.517 kb on + strandat 50.592 kb on + strandat 50.600 kb on - strandat 50.646 kb on + strandat 50.653 kb on + strandat 50.656 kb on + strandat 50.656 kb on + strandat 50.664 kb on - strandat 50.723 kb on - strandat 50.759 kb on + strand, within B158DRAFT_0054at 50.800 kb on - strand, within B158DRAFT_0054at 50.978 kb on - strand, within B158DRAFT_0054at 50.980 kb on + strand, within B158DRAFT_0054at 51.016 kb on + strand, within B158DRAFT_0054at 51.016 kb on + strand, within B158DRAFT_0054at 51.052 kb on + strand, within B158DRAFT_0054at 51.062 kb on + strand, within B158DRAFT_0054at 51.089 kb on + strand, within B158DRAFT_0054at 51.089 kb on + strand, within B158DRAFT_0054at 51.099 kb on + strand, within B158DRAFT_0054at 51.099 kb on + strand, within B158DRAFT_0054at 51.099 kb on + strand, within B158DRAFT_0054at 51.099 kb on + strand, within B158DRAFT_0054at 51.107 kb on - strand, within B158DRAFT_0054at 51.107 kb on - strand, within B158DRAFT_0054at 51.191 kb on + strand, within B158DRAFT_0054at 51.191 kb on + strand, within B158DRAFT_0054at 51.191 kb on + strand, within B158DRAFT_0054at 51.199 kb on - strand, within B158DRAFT_0054at 51.199 kb on - strand, within B158DRAFT_0054at 51.199 kb on - strand, within B158DRAFT_0054at 51.199 kb on - strand, within B158DRAFT_0054at 51.199 kb on - strand, within B158DRAFT_0054at 51.366 kb on + strand, within B158DRAFT_0054at 51.373 kb on + strand, within B158DRAFT_0054at 51.373 kb on + strand, within B158DRAFT_0054at 51.436 kb on + strand, within B158DRAFT_0054at 51.451 kb on - strand, within B158DRAFT_0054at 51.459 kb on - strand, within B158DRAFT_0054at 51.464 kb on + strand, within B158DRAFT_0054at 51.467 kb on - strand, within B158DRAFT_0054at 51.467 kb on - strand, within B158DRAFT_0054at 51.472 kb on - strand, within B158DRAFT_0054at 51.539 kb on - strand, within B158DRAFT_0054at 51.588 kb on - strand, within B158DRAFT_0054at 51.777 kb on - strand, within B158DRAFT_0054at 51.824 kb on - strand, within B158DRAFT_0054at 51.933 kb on - strand, within B158DRAFT_0054at 51.933 kb on - strand, within B158DRAFT_0054at 51.951 kb on + strand, within B158DRAFT_0054at 51.959 kb on - strand, within B158DRAFT_0054at 51.974 kb on - strand, within B158DRAFT_0054at 51.977 kb on + strand, within B158DRAFT_0054at 51.977 kb on + strand, within B158DRAFT_0054at 51.977 kb on + strand, within B158DRAFT_0054at 51.977 kb on + strand, within B158DRAFT_0054at 51.985 kb on - strand, within B158DRAFT_0054at 51.985 kb on - strand, within B158DRAFT_0054at 51.987 kb on + strand, within B158DRAFT_0054at 51.995 kb on - strand, within B158DRAFT_0054at 52.033 kb on + strand, within B158DRAFT_0054at 52.034 kb on + strand, within B158DRAFT_0054at 52.042 kb on - strand, within B158DRAFT_0054at 52.078 kb on + strand, within B158DRAFT_0054at 52.089 kb on + strand, within B158DRAFT_0054at 52.112 kb on + strand, within B158DRAFT_0054at 52.130 kb on + strand, within B158DRAFT_0054at 52.177 kb on + strand, within B158DRAFT_0054at 52.191 kb on + strand, within B158DRAFT_0054at 52.218 kb on - strand, within B158DRAFT_0054at 52.244 kb on + strand, within B158DRAFT_0054at 52.251 kb on + strand, within B158DRAFT_0054at 52.259 kb on - strand, within B158DRAFT_0054at 52.277 kb on - strand, within B158DRAFT_0054at 52.283 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.288 kb on + strand, within B158DRAFT_0054at 52.290 kb on + strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.296 kb on - strand, within B158DRAFT_0054at 52.301 kb on - strand, within B158DRAFT_0054at 52.338 kb on + strand, within B158DRAFT_0054at 52.391 kb on - strand, within B158DRAFT_0054at 52.422 kb on + strand, within B158DRAFT_0054at 52.472 kb on + strand, within B158DRAFT_0054at 52.472 kb on + strand, within B158DRAFT_0054at 52.500 kb on - strand, within B158DRAFT_0054at 52.529 kb on + strand, within B158DRAFT_0054at 52.546 kb on + strand, within B158DRAFT_0054at 52.564 kb on - strand, within B158DRAFT_0054at 52.660 kb on + strand, within B158DRAFT_0054at 52.668 kb on - strand, within B158DRAFT_0054at 52.668 kb on - strand, within B158DRAFT_0054at 52.671 kb on + strand, within B158DRAFT_0054at 52.671 kb on + strand, within B158DRAFT_0054at 52.691 kb on - strand, within B158DRAFT_0054at 52.701 kb on + strand, within B158DRAFT_0054at 52.724 kb on + strand, within B158DRAFT_0054at 52.732 kb on - strand, within B158DRAFT_0054at 52.835 kb on + strandat 52.886 kb on - strandat 52.890 kb on + strandat 52.972 kb on + strandat 52.972 kb on + strandat 52.996 kb on - strandat 53.017 kb on - strandat 53.048 kb on + strandat 53.139 kb on + strandat 53.198 kb on - strand, within B158DRAFT_0055at 53.234 kb on - strand, within B158DRAFT_0055at 53.340 kb on - strand, within B158DRAFT_0055at 53.373 kb on - strand, within B158DRAFT_0055at 53.385 kb on + strand, within B158DRAFT_0055at 53.385 kb on + strand, within B158DRAFT_0055at 53.385 kb on + strand, within B158DRAFT_0055at 53.393 kb on - strand, within B158DRAFT_0055at 53.486 kb on - strand, within B158DRAFT_0055at 53.514 kb on - strand, within B158DRAFT_0055at 53.526 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.613 kb on + strand, within B158DRAFT_0055at 53.621 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.634 kb on - strand, within B158DRAFT_0055at 53.653 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.655 kb on + strand, within B158DRAFT_0055at 53.661 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.663 kb on - strand, within B158DRAFT_0055at 53.669 kb on + strand, within B158DRAFT_0055at 53.672 kb on - strand, within B158DRAFT_0055at 53.752 kb on + strandat 53.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Nickel (II) chloride 1.25 mM
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49,498 + B158DRAFT_0052 0.61 -1.0
49,508 - B158DRAFT_0052 0.63 -0.7
49,562 + B158DRAFT_0052 0.69 -0.2
49,584 + B158DRAFT_0052 0.72 -0.8
49,736 - -0.1
49,738 + -0.7
49,799 + -0.9
49,807 - -0.3
49,906 - -0.4
49,957 + B158DRAFT_0053 0.13 +0.1
49,957 + B158DRAFT_0053 0.13 +0.1
49,957 + B158DRAFT_0053 0.13 -0.2
49,957 + B158DRAFT_0053 0.13 +0.3
49,964 + B158DRAFT_0053 0.15 +0.2
49,965 - B158DRAFT_0053 0.15 +0.0
49,965 - B158DRAFT_0053 0.15 -0.1
49,965 - B158DRAFT_0053 0.15 -0.3
49,965 - B158DRAFT_0053 0.15 -0.2
49,972 - B158DRAFT_0053 0.18 +0.1
49,979 + B158DRAFT_0053 0.20 +0.0
50,054 + B158DRAFT_0053 0.43 -1.0
50,077 + B158DRAFT_0053 0.51 +0.1
50,077 + B158DRAFT_0053 0.51 +0.0
50,077 + B158DRAFT_0053 0.51 +0.3
50,077 + B158DRAFT_0053 0.51 -0.1
50,077 + B158DRAFT_0053 0.51 -0.6
50,085 - B158DRAFT_0053 0.53 -0.1
50,085 - B158DRAFT_0053 0.53 -0.7
50,085 - B158DRAFT_0053 0.53 -0.2
50,099 + B158DRAFT_0053 0.58 -0.6
50,117 - B158DRAFT_0053 0.63 +0.5
50,117 - B158DRAFT_0053 0.63 +0.2
50,243 - +0.2
50,269 + -0.2
50,277 + -0.0
50,278 + -0.7
50,286 - -0.4
50,401 + -0.5
50,409 + +0.5
50,417 - +0.1
50,504 + -0.5
50,517 + +0.3
50,592 + +0.5
50,600 - -0.1
50,646 + +0.1
50,653 + -0.8
50,656 + +0.0
50,656 + +0.2
50,664 - -1.8
50,723 - +0.2
50,759 + B158DRAFT_0054 0.11 -0.0
50,800 - B158DRAFT_0054 0.13 +0.1
50,978 - B158DRAFT_0054 0.20 +0.4
50,980 + B158DRAFT_0054 0.20 -0.4
51,016 + B158DRAFT_0054 0.21 +0.4
51,016 + B158DRAFT_0054 0.21 -0.4
51,052 + B158DRAFT_0054 0.23 +0.3
51,062 + B158DRAFT_0054 0.23 +0.2
51,089 + B158DRAFT_0054 0.24 +0.2
51,089 + B158DRAFT_0054 0.24 +0.8
51,099 + B158DRAFT_0054 0.24 +0.3
51,099 + B158DRAFT_0054 0.24 -0.5
51,099 + B158DRAFT_0054 0.24 -0.2
51,099 + B158DRAFT_0054 0.24 +0.7
51,107 - B158DRAFT_0054 0.25 -0.1
51,107 - B158DRAFT_0054 0.25 +0.6
51,191 + B158DRAFT_0054 0.28 +0.3
51,191 + B158DRAFT_0054 0.28 +0.0
51,191 + B158DRAFT_0054 0.28 -0.5
51,199 - B158DRAFT_0054 0.28 -0.3
51,199 - B158DRAFT_0054 0.28 -0.5
51,199 - B158DRAFT_0054 0.28 -0.3
51,199 - B158DRAFT_0054 0.28 -0.1
51,199 - B158DRAFT_0054 0.28 +0.0
51,366 + B158DRAFT_0054 0.35 -0.4
51,373 + B158DRAFT_0054 0.35 -0.3
51,373 + B158DRAFT_0054 0.35 -0.2
51,436 + B158DRAFT_0054 0.37 -0.0
51,451 - B158DRAFT_0054 0.38 +1.0
51,459 - B158DRAFT_0054 0.38 -1.0
51,464 + B158DRAFT_0054 0.38 -0.4
51,467 - B158DRAFT_0054 0.38 -0.3
51,467 - B158DRAFT_0054 0.38 -0.2
51,472 - B158DRAFT_0054 0.39 -0.1
51,539 - B158DRAFT_0054 0.41 +0.3
51,588 - B158DRAFT_0054 0.43 +0.6
51,777 - B158DRAFT_0054 0.50 +0.1
51,824 - B158DRAFT_0054 0.52 +0.2
51,933 - B158DRAFT_0054 0.56 -1.3
51,933 - B158DRAFT_0054 0.56 +0.1
51,951 + B158DRAFT_0054 0.57 +0.3
51,959 - B158DRAFT_0054 0.57 -0.6
51,974 - B158DRAFT_0054 0.58 +0.2
51,977 + B158DRAFT_0054 0.58 -0.3
51,977 + B158DRAFT_0054 0.58 +0.9
51,977 + B158DRAFT_0054 0.58 +0.1
51,977 + B158DRAFT_0054 0.58 -0.2
51,985 - B158DRAFT_0054 0.58 -0.5
51,985 - B158DRAFT_0054 0.58 +0.3
51,987 + B158DRAFT_0054 0.58 +0.1
51,995 - B158DRAFT_0054 0.59 +0.6
52,033 + B158DRAFT_0054 0.60 -0.2
52,034 + B158DRAFT_0054 0.60 +0.1
52,042 - B158DRAFT_0054 0.60 -0.9
52,078 + B158DRAFT_0054 0.62 -1.0
52,089 + B158DRAFT_0054 0.62 -0.1
52,112 + B158DRAFT_0054 0.63 -0.4
52,130 + B158DRAFT_0054 0.64 -0.0
52,177 + B158DRAFT_0054 0.66 +0.4
52,191 + B158DRAFT_0054 0.66 -0.8
52,218 - B158DRAFT_0054 0.67 +0.2
52,244 + B158DRAFT_0054 0.68 +0.4
52,251 + B158DRAFT_0054 0.68 +0.1
52,259 - B158DRAFT_0054 0.69 -0.2
52,277 - B158DRAFT_0054 0.69 +0.1
52,283 + B158DRAFT_0054 0.70 +0.6
52,288 + B158DRAFT_0054 0.70 -0.3
52,288 + B158DRAFT_0054 0.70 +0.7
52,288 + B158DRAFT_0054 0.70 -0.9
52,288 + B158DRAFT_0054 0.70 -0.0
52,288 + B158DRAFT_0054 0.70 +0.4
52,288 + B158DRAFT_0054 0.70 -0.1
52,288 + B158DRAFT_0054 0.70 -0.4
52,288 + B158DRAFT_0054 0.70 +0.2
52,290 + B158DRAFT_0054 0.70 -0.3
52,296 - B158DRAFT_0054 0.70 -0.0
52,296 - B158DRAFT_0054 0.70 -0.9
52,296 - B158DRAFT_0054 0.70 +0.7
52,296 - B158DRAFT_0054 0.70 -0.3
52,296 - B158DRAFT_0054 0.70 -0.3
52,296 - B158DRAFT_0054 0.70 +0.1
52,296 - B158DRAFT_0054 0.70 +0.5
52,301 - B158DRAFT_0054 0.70 -0.5
52,338 + B158DRAFT_0054 0.72 +0.4
52,391 - B158DRAFT_0054 0.74 +0.4
52,422 + B158DRAFT_0054 0.75 +0.3
52,472 + B158DRAFT_0054 0.77 +0.0
52,472 + B158DRAFT_0054 0.77 -0.1
52,500 - B158DRAFT_0054 0.78 +0.6
52,529 + B158DRAFT_0054 0.79 +0.0
52,546 + B158DRAFT_0054 0.80 +0.2
52,564 - B158DRAFT_0054 0.80 -0.2
52,660 + B158DRAFT_0054 0.84 +1.3
52,668 - B158DRAFT_0054 0.84 +0.3
52,668 - B158DRAFT_0054 0.84 +0.1
52,671 + B158DRAFT_0054 0.85 -0.8
52,671 + B158DRAFT_0054 0.85 +0.1
52,691 - B158DRAFT_0054 0.85 -0.0
52,701 + B158DRAFT_0054 0.86 -0.5
52,724 + B158DRAFT_0054 0.87 -0.6
52,732 - B158DRAFT_0054 0.87 +0.3
52,835 + +1.0
52,886 - -0.1
52,890 + -0.1
52,972 + -0.9
52,972 + +0.0
52,996 - +0.0
53,017 - -0.3
53,048 + +1.1
53,139 + -0.5
53,198 - B158DRAFT_0055 0.15 +0.0
53,234 - B158DRAFT_0055 0.20 -0.2
53,340 - B158DRAFT_0055 0.35 +0.2
53,373 - B158DRAFT_0055 0.40 -0.1
53,385 + B158DRAFT_0055 0.41 -1.0
53,385 + B158DRAFT_0055 0.41 +0.2
53,385 + B158DRAFT_0055 0.41 +0.1
53,393 - B158DRAFT_0055 0.42 -0.0
53,486 - B158DRAFT_0055 0.55 +0.1
53,514 - B158DRAFT_0055 0.59 -0.0
53,526 + B158DRAFT_0055 0.61 +0.5
53,613 + B158DRAFT_0055 0.73 -0.1
53,613 + B158DRAFT_0055 0.73 -0.5
53,613 + B158DRAFT_0055 0.73 -0.2
53,613 + B158DRAFT_0055 0.73 +0.4
53,613 + B158DRAFT_0055 0.73 -0.3
53,613 + B158DRAFT_0055 0.73 -0.2
53,621 - B158DRAFT_0055 0.74 -0.0
53,634 - B158DRAFT_0055 0.75 -0.1
53,634 - B158DRAFT_0055 0.75 -0.1
53,634 - B158DRAFT_0055 0.75 +0.5
53,634 - B158DRAFT_0055 0.75 +0.6
53,634 - B158DRAFT_0055 0.75 +0.1
53,653 + B158DRAFT_0055 0.78 +0.0
53,655 + B158DRAFT_0055 0.78 -0.7
53,655 + B158DRAFT_0055 0.78 +0.1
53,655 + B158DRAFT_0055 0.78 -0.1
53,655 + B158DRAFT_0055 0.78 -0.0
53,655 + B158DRAFT_0055 0.78 +0.1
53,655 + B158DRAFT_0055 0.78 -0.4
53,655 + B158DRAFT_0055 0.78 +0.1
53,655 + B158DRAFT_0055 0.78 +0.1
53,661 - B158DRAFT_0055 0.79 -0.1
53,663 - B158DRAFT_0055 0.79 +0.8
53,663 - B158DRAFT_0055 0.79 +0.8
53,663 - B158DRAFT_0055 0.79 +0.4
53,663 - B158DRAFT_0055 0.79 -0.0
53,663 - B158DRAFT_0055 0.79 +0.6
53,663 - B158DRAFT_0055 0.79 -1.4
53,663 - B158DRAFT_0055 0.79 +0.4
53,669 + B158DRAFT_0055 0.80 -0.0
53,672 - B158DRAFT_0055 0.81 +0.6
53,752 + +0.3
53,914 + +0.1

Or see this region's nucleotide sequence