Experiment: m.b. D-Cycloserine 0.03125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1444 and B158DRAFT_1445 are separated by 371 nucleotides B158DRAFT_1445 and B158DRAFT_1446 are separated by 381 nucleotides
B158DRAFT_1444: B158DRAFT_1444 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 1,496,488 to 1,498,425
_1444
B158DRAFT_1445: B158DRAFT_1445 - Phenylalanine 4-hydroxylase (EC 1.14.16.1), at 1,498,797 to 1,499,600
_1445
B158DRAFT_1446: B158DRAFT_1446 - 4-hydroxyphenylpyruvate dioxygenase, at 1,499,982 to 1,501,043
_1446
Position (kb)
1498
1499
1500 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1497.799 kb on - strand, within B158DRAFT_1444 at 1497.804 kb on - strand, within B158DRAFT_1444 at 1497.964 kb on + strand, within B158DRAFT_1444 at 1497.984 kb on + strand, within B158DRAFT_1444 at 1498.012 kb on - strand, within B158DRAFT_1444 at 1498.042 kb on + strand, within B158DRAFT_1444 at 1498.136 kb on + strand, within B158DRAFT_1444 at 1498.149 kb on - strand, within B158DRAFT_1444 at 1498.201 kb on + strand, within B158DRAFT_1444 at 1498.232 kb on + strand at 1498.240 kb on - strand at 1498.299 kb on + strand at 1498.307 kb on - strand at 1498.333 kb on + strand at 1498.341 kb on - strand at 1498.343 kb on + strand at 1498.343 kb on + strand at 1498.351 kb on - strand at 1498.351 kb on - strand at 1498.352 kb on + strand at 1498.352 kb on + strand at 1498.357 kb on + strand at 1498.360 kb on - strand at 1498.360 kb on - strand at 1498.360 kb on - strand at 1498.360 kb on - strand at 1498.360 kb on - strand at 1498.360 kb on - strand at 1498.360 kb on - strand at 1498.367 kb on + strand at 1498.367 kb on + strand at 1498.367 kb on + strand at 1498.369 kb on + strand at 1498.375 kb on - strand at 1498.375 kb on - strand at 1498.375 kb on - strand at 1498.404 kb on + strand at 1498.404 kb on + strand at 1498.429 kb on - strand at 1498.429 kb on - strand at 1498.462 kb on + strand at 1498.474 kb on + strand at 1498.482 kb on - strand at 1498.700 kb on + strand at 1498.771 kb on + strand at 1498.778 kb on + strand at 1498.779 kb on - strand at 1498.814 kb on + strand at 1498.814 kb on + strand at 1498.814 kb on + strand at 1498.814 kb on + strand at 1498.814 kb on + strand at 1498.814 kb on + strand at 1498.814 kb on - strand at 1498.822 kb on - strand at 1498.917 kb on + strand, within B158DRAFT_1445 at 1498.925 kb on - strand, within B158DRAFT_1445 at 1498.935 kb on - strand, within B158DRAFT_1445 at 1498.954 kb on + strand, within B158DRAFT_1445 at 1499.036 kb on - strand, within B158DRAFT_1445 at 1499.085 kb on + strand, within B158DRAFT_1445 at 1499.085 kb on + strand, within B158DRAFT_1445 at 1499.106 kb on + strand, within B158DRAFT_1445 at 1499.216 kb on - strand, within B158DRAFT_1445 at 1499.229 kb on + strand, within B158DRAFT_1445 at 1499.254 kb on - strand, within B158DRAFT_1445 at 1499.303 kb on - strand, within B158DRAFT_1445 at 1499.325 kb on - strand, within B158DRAFT_1445 at 1499.348 kb on + strand, within B158DRAFT_1445 at 1499.386 kb on + strand, within B158DRAFT_1445 at 1499.435 kb on + strand, within B158DRAFT_1445 at 1499.439 kb on - strand, within B158DRAFT_1445 at 1499.460 kb on + strand, within B158DRAFT_1445 at 1499.509 kb on + strand, within B158DRAFT_1445 at 1499.510 kb on + strand, within B158DRAFT_1445 at 1499.528 kb on + strand at 1499.545 kb on + strand at 1499.555 kb on + strand at 1499.558 kb on - strand at 1499.562 kb on + strand at 1499.563 kb on - strand at 1499.600 kb on + strand at 1499.605 kb on + strand at 1499.717 kb on - strand at 1499.747 kb on + strand at 1499.747 kb on + strand at 1499.755 kb on - strand at 1499.758 kb on + strand at 1499.785 kb on - strand at 1499.795 kb on - strand at 1499.808 kb on + strand at 1499.867 kb on + strand at 1499.867 kb on + strand at 1499.874 kb on - strand at 1499.875 kb on - strand at 1499.875 kb on - strand at 1499.929 kb on - strand at 1500.010 kb on + strand at 1500.037 kb on + strand at 1500.177 kb on - strand, within B158DRAFT_1446 at 1500.187 kb on + strand, within B158DRAFT_1446 at 1500.224 kb on - strand, within B158DRAFT_1446 at 1500.226 kb on + strand, within B158DRAFT_1446 at 1500.233 kb on + strand, within B158DRAFT_1446 at 1500.276 kb on + strand, within B158DRAFT_1446 at 1500.284 kb on - strand, within B158DRAFT_1446 at 1500.284 kb on - strand, within B158DRAFT_1446 at 1500.286 kb on + strand, within B158DRAFT_1446 at 1500.286 kb on + strand, within B158DRAFT_1446 at 1500.294 kb on - strand, within B158DRAFT_1446 at 1500.323 kb on - strand, within B158DRAFT_1446 at 1500.351 kb on + strand, within B158DRAFT_1446 at 1500.351 kb on + strand, within B158DRAFT_1446 at 1500.351 kb on + strand, within B158DRAFT_1446 at 1500.351 kb on + strand, within B158DRAFT_1446 at 1500.351 kb on + strand, within B158DRAFT_1446 at 1500.354 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.359 kb on - strand, within B158DRAFT_1446 at 1500.392 kb on - strand, within B158DRAFT_1446 at 1500.445 kb on + strand, within B158DRAFT_1446 at 1500.460 kb on + strand, within B158DRAFT_1446 at 1500.460 kb on + strand, within B158DRAFT_1446 at 1500.460 kb on - strand, within B158DRAFT_1446 at 1500.481 kb on + strand, within B158DRAFT_1446 at 1500.488 kb on + strand, within B158DRAFT_1446 at 1500.496 kb on + strand, within B158DRAFT_1446 at 1500.496 kb on + strand, within B158DRAFT_1446 at 1500.496 kb on - strand, within B158DRAFT_1446 at 1500.504 kb on - strand, within B158DRAFT_1446 at 1500.579 kb on + strand, within B158DRAFT_1446 at 1500.579 kb on + strand, within B158DRAFT_1446 at 1500.579 kb on + strand at 1500.579 kb on + strand, within B158DRAFT_1446 at 1500.587 kb on - strand, within B158DRAFT_1446 at 1500.587 kb on - strand, within B158DRAFT_1446 at 1500.587 kb on - strand, within B158DRAFT_1446 at 1500.593 kb on + strand, within B158DRAFT_1446
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml remove 1,497,799 - B158DRAFT_1444 0.68 +1.2 1,497,804 - B158DRAFT_1444 0.68 +2.4 1,497,964 + B158DRAFT_1444 0.76 -0.0 1,497,984 + B158DRAFT_1444 0.77 +0.6 1,498,012 - B158DRAFT_1444 0.79 -1.0 1,498,042 + B158DRAFT_1444 0.80 +0.8 1,498,136 + B158DRAFT_1444 0.85 +1.1 1,498,149 - B158DRAFT_1444 0.86 +0.6 1,498,201 + B158DRAFT_1444 0.88 +0.9 1,498,232 + +1.2 1,498,240 - +1.5 1,498,299 + +0.1 1,498,307 - +0.9 1,498,333 + +1.5 1,498,341 - +0.7 1,498,343 + +0.4 1,498,343 + +1.5 1,498,351 - +0.6 1,498,351 - +1.1 1,498,352 + +0.9 1,498,352 + +0.9 1,498,357 + +0.6 1,498,360 - +0.5 1,498,360 - +0.1 1,498,360 - +0.7 1,498,360 - +0.8 1,498,360 - +0.5 1,498,360 - +0.2 1,498,360 - +0.5 1,498,367 + +0.8 1,498,367 + +0.1 1,498,367 + +0.1 1,498,369 + +2.4 1,498,375 - -0.1 1,498,375 - +1.0 1,498,375 - +0.4 1,498,404 + +1.0 1,498,404 + +0.6 1,498,429 - +0.3 1,498,429 - +0.2 1,498,462 + +0.7 1,498,474 + +1.1 1,498,482 - +1.2 1,498,700 + +0.5 1,498,771 + -0.6 1,498,778 + -0.7 1,498,779 - -0.6 1,498,814 + -0.2 1,498,814 + -1.0 1,498,814 + -0.6 1,498,814 + +0.6 1,498,814 + +0.3 1,498,814 + -1.9 1,498,814 - -0.7 1,498,822 - -1.3 1,498,917 + B158DRAFT_1445 0.15 -0.6 1,498,925 - B158DRAFT_1445 0.16 -0.9 1,498,935 - B158DRAFT_1445 0.17 -1.2 1,498,954 + B158DRAFT_1445 0.20 -0.2 1,499,036 - B158DRAFT_1445 0.30 -0.3 1,499,085 + B158DRAFT_1445 0.36 -0.3 1,499,085 + B158DRAFT_1445 0.36 -2.2 1,499,106 + B158DRAFT_1445 0.38 -1.0 1,499,216 - B158DRAFT_1445 0.52 +0.5 1,499,229 + B158DRAFT_1445 0.54 -0.5 1,499,254 - B158DRAFT_1445 0.57 -0.5 1,499,303 - B158DRAFT_1445 0.63 -1.6 1,499,325 - B158DRAFT_1445 0.66 -1.1 1,499,348 + B158DRAFT_1445 0.69 +0.1 1,499,386 + B158DRAFT_1445 0.73 -0.9 1,499,435 + B158DRAFT_1445 0.79 -0.6 1,499,439 - B158DRAFT_1445 0.80 -0.5 1,499,460 + B158DRAFT_1445 0.82 -1.1 1,499,509 + B158DRAFT_1445 0.89 +2.0 1,499,510 + B158DRAFT_1445 0.89 -0.7 1,499,528 + -0.6 1,499,545 + -0.8 1,499,555 + -0.3 1,499,558 - -0.6 1,499,562 + +0.0 1,499,563 - +0.9 1,499,600 + +0.2 1,499,605 + +0.2 1,499,717 - -1.2 1,499,747 + +0.1 1,499,747 + -1.3 1,499,755 - -1.9 1,499,758 + -0.4 1,499,785 - -2.6 1,499,795 - -1.3 1,499,808 + -0.8 1,499,867 + -1.0 1,499,867 + +0.1 1,499,874 - -1.0 1,499,875 - -1.5 1,499,875 - -2.1 1,499,929 - -1.2 1,500,010 + -0.9 1,500,037 + -2.1 1,500,177 - B158DRAFT_1446 0.18 -2.4 1,500,187 + B158DRAFT_1446 0.19 -2.1 1,500,224 - B158DRAFT_1446 0.23 -1.8 1,500,226 + B158DRAFT_1446 0.23 -0.9 1,500,233 + B158DRAFT_1446 0.24 -1.6 1,500,276 + B158DRAFT_1446 0.28 -0.0 1,500,284 - B158DRAFT_1446 0.28 -1.5 1,500,284 - B158DRAFT_1446 0.28 -2.1 1,500,286 + B158DRAFT_1446 0.29 -2.0 1,500,286 + B158DRAFT_1446 0.29 -1.8 1,500,294 - B158DRAFT_1446 0.29 -2.5 1,500,323 - B158DRAFT_1446 0.32 -2.5 1,500,351 + B158DRAFT_1446 0.35 -1.4 1,500,351 + B158DRAFT_1446 0.35 -1.5 1,500,351 + B158DRAFT_1446 0.35 -0.2 1,500,351 + B158DRAFT_1446 0.35 -0.8 1,500,351 + B158DRAFT_1446 0.35 -1.4 1,500,354 - B158DRAFT_1446 0.35 -1.7 1,500,359 - B158DRAFT_1446 0.35 -3.7 1,500,359 - B158DRAFT_1446 0.35 -1.4 1,500,359 - B158DRAFT_1446 0.35 -2.0 1,500,359 - B158DRAFT_1446 0.35 -1.4 1,500,359 - B158DRAFT_1446 0.35 -2.1 1,500,359 - B158DRAFT_1446 0.35 -1.7 1,500,359 - B158DRAFT_1446 0.35 -2.7 1,500,359 - B158DRAFT_1446 0.35 -2.8 1,500,359 - B158DRAFT_1446 0.35 -1.7 1,500,359 - B158DRAFT_1446 0.35 -1.9 1,500,359 - B158DRAFT_1446 0.35 -1.0 1,500,359 - B158DRAFT_1446 0.35 -2.8 1,500,359 - B158DRAFT_1446 0.35 -1.6 1,500,392 - B158DRAFT_1446 0.39 -1.6 1,500,445 + B158DRAFT_1446 0.44 -1.0 1,500,460 + B158DRAFT_1446 0.45 -0.8 1,500,460 + B158DRAFT_1446 0.45 -2.6 1,500,460 - B158DRAFT_1446 0.45 -1.9 1,500,481 + B158DRAFT_1446 0.47 -0.1 1,500,488 + B158DRAFT_1446 0.48 -0.6 1,500,496 + B158DRAFT_1446 0.48 -0.6 1,500,496 + B158DRAFT_1446 0.48 -1.9 1,500,496 - B158DRAFT_1446 0.48 -2.8 1,500,504 - B158DRAFT_1446 0.49 -1.0 1,500,579 + B158DRAFT_1446 0.56 +0.0 1,500,579 + B158DRAFT_1446 0.56 +0.1 1,500,579 + -0.5 1,500,579 + B158DRAFT_1446 0.56 -0.2 1,500,587 - B158DRAFT_1446 0.57 -0.9 1,500,587 - B158DRAFT_1446 0.57 -3.4 1,500,587 - B158DRAFT_1446 0.57 -1.5 1,500,593 + B158DRAFT_1446 0.58 -0.5
Or see this region's nucleotide sequence