Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1405

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1404 and B158DRAFT_1405 are separated by 183 nucleotidesB158DRAFT_1405 and B158DRAFT_1406 are separated by 11 nucleotides B158DRAFT_1404: B158DRAFT_1404 - pyruvate kinase, at 1,450,419 to 1,451,864 _1404 B158DRAFT_1405: B158DRAFT_1405 - Cation/multidrug efflux pump, at 1,452,048 to 1,455,233 _1405 B158DRAFT_1406: B158DRAFT_1406 - RND family efflux transporter, MFP subunit, at 1,455,245 to 1,456,462 _1406 Position (kb) 1452 1453 1454 1455 1456Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1451.093 kb on - strand, within B158DRAFT_1404at 1451.187 kb on + strand, within B158DRAFT_1404at 1451.323 kb on + strand, within B158DRAFT_1404at 1451.343 kb on - strand, within B158DRAFT_1404at 1451.355 kb on + strand, within B158DRAFT_1404at 1451.465 kb on - strand, within B158DRAFT_1404at 1451.516 kb on - strand, within B158DRAFT_1404at 1451.712 kb on + strand, within B158DRAFT_1404at 1451.759 kb on + strandat 1451.853 kb on - strandat 1451.909 kb on - strandat 1452.046 kb on - strandat 1452.121 kb on - strandat 1452.123 kb on + strandat 1452.123 kb on + strandat 1452.131 kb on - strandat 1452.131 kb on - strandat 1452.156 kb on - strandat 1452.216 kb on - strandat 1452.292 kb on - strandat 1452.292 kb on - strandat 1452.292 kb on - strandat 1452.292 kb on - strandat 1452.292 kb on - strandat 1452.292 kb on - strandat 1452.358 kb on + strandat 1452.403 kb on - strand, within B158DRAFT_1405at 1452.403 kb on - strand, within B158DRAFT_1405at 1452.443 kb on + strand, within B158DRAFT_1405at 1452.487 kb on - strand, within B158DRAFT_1405at 1452.620 kb on + strand, within B158DRAFT_1405at 1452.628 kb on - strand, within B158DRAFT_1405at 1452.642 kb on - strand, within B158DRAFT_1405at 1452.657 kb on - strand, within B158DRAFT_1405at 1452.695 kb on - strand, within B158DRAFT_1405at 1452.722 kb on - strand, within B158DRAFT_1405at 1452.722 kb on - strand, within B158DRAFT_1405at 1452.731 kb on + strand, within B158DRAFT_1405at 1452.732 kb on - strand, within B158DRAFT_1405at 1452.737 kb on + strand, within B158DRAFT_1405at 1452.737 kb on + strand, within B158DRAFT_1405at 1452.738 kb on - strand, within B158DRAFT_1405at 1452.745 kb on - strand, within B158DRAFT_1405at 1452.745 kb on - strand, within B158DRAFT_1405at 1452.793 kb on + strand, within B158DRAFT_1405at 1452.850 kb on + strand, within B158DRAFT_1405at 1452.850 kb on + strand, within B158DRAFT_1405at 1452.850 kb on + strand, within B158DRAFT_1405at 1452.858 kb on - strand, within B158DRAFT_1405at 1452.865 kb on + strand, within B158DRAFT_1405at 1452.904 kb on - strand, within B158DRAFT_1405at 1453.013 kb on + strand, within B158DRAFT_1405at 1453.013 kb on + strand, within B158DRAFT_1405at 1453.014 kb on + strand, within B158DRAFT_1405at 1453.015 kb on - strand, within B158DRAFT_1405at 1453.015 kb on - strand, within B158DRAFT_1405at 1453.021 kb on - strand, within B158DRAFT_1405at 1453.021 kb on - strand, within B158DRAFT_1405at 1453.027 kb on + strand, within B158DRAFT_1405at 1453.027 kb on + strand, within B158DRAFT_1405at 1453.027 kb on + strand, within B158DRAFT_1405at 1453.027 kb on + strand, within B158DRAFT_1405at 1453.027 kb on + strand, within B158DRAFT_1405at 1453.035 kb on - strand, within B158DRAFT_1405at 1453.035 kb on - strand, within B158DRAFT_1405at 1453.035 kb on - strand, within B158DRAFT_1405at 1453.035 kb on - strand, within B158DRAFT_1405at 1453.035 kb on - strand, within B158DRAFT_1405at 1453.036 kb on - strand, within B158DRAFT_1405at 1453.067 kb on + strand, within B158DRAFT_1405at 1453.067 kb on + strand, within B158DRAFT_1405at 1453.075 kb on - strand, within B158DRAFT_1405at 1453.100 kb on - strand, within B158DRAFT_1405at 1453.153 kb on + strand, within B158DRAFT_1405at 1453.161 kb on - strand, within B158DRAFT_1405at 1453.228 kb on + strand, within B158DRAFT_1405at 1453.236 kb on + strand, within B158DRAFT_1405at 1453.297 kb on + strand, within B158DRAFT_1405at 1453.297 kb on + strand, within B158DRAFT_1405at 1453.305 kb on - strand, within B158DRAFT_1405at 1453.305 kb on - strand, within B158DRAFT_1405at 1453.310 kb on - strand, within B158DRAFT_1405at 1453.312 kb on + strand, within B158DRAFT_1405at 1453.312 kb on + strand, within B158DRAFT_1405at 1453.312 kb on + strand, within B158DRAFT_1405at 1453.312 kb on + strand, within B158DRAFT_1405at 1453.312 kb on + strand, within B158DRAFT_1405at 1453.320 kb on - strand, within B158DRAFT_1405at 1453.320 kb on - strand, within B158DRAFT_1405at 1453.320 kb on - strand, within B158DRAFT_1405at 1453.320 kb on - strand, within B158DRAFT_1405at 1453.320 kb on - strand, within B158DRAFT_1405at 1453.320 kb on - strand, within B158DRAFT_1405at 1453.325 kb on - strand, within B158DRAFT_1405at 1453.375 kb on - strand, within B158DRAFT_1405at 1453.375 kb on - strand, within B158DRAFT_1405at 1453.384 kb on + strand, within B158DRAFT_1405at 1453.406 kb on - strand, within B158DRAFT_1405at 1453.412 kb on + strand, within B158DRAFT_1405at 1453.437 kb on + strand, within B158DRAFT_1405at 1453.445 kb on - strand, within B158DRAFT_1405at 1453.446 kb on + strand, within B158DRAFT_1405at 1453.448 kb on + strand, within B158DRAFT_1405at 1453.456 kb on + strand, within B158DRAFT_1405at 1453.462 kb on + strand, within B158DRAFT_1405at 1453.529 kb on - strand, within B158DRAFT_1405at 1453.530 kb on - strand, within B158DRAFT_1405at 1453.581 kb on + strand, within B158DRAFT_1405at 1453.590 kb on + strand, within B158DRAFT_1405at 1453.622 kb on + strand, within B158DRAFT_1405at 1453.655 kb on + strand, within B158DRAFT_1405at 1453.873 kb on + strand, within B158DRAFT_1405at 1453.901 kb on - strand, within B158DRAFT_1405at 1453.916 kb on - strand, within B158DRAFT_1405at 1453.935 kb on - strand, within B158DRAFT_1405at 1453.936 kb on - strand, within B158DRAFT_1405at 1453.958 kb on - strand, within B158DRAFT_1405at 1454.080 kb on + strand, within B158DRAFT_1405at 1454.099 kb on + strand, within B158DRAFT_1405at 1454.102 kb on - strand, within B158DRAFT_1405at 1454.107 kb on - strand, within B158DRAFT_1405at 1454.107 kb on - strand, within B158DRAFT_1405at 1454.107 kb on - strand, within B158DRAFT_1405at 1454.126 kb on - strand, within B158DRAFT_1405at 1454.187 kb on - strand, within B158DRAFT_1405at 1454.200 kb on - strand, within B158DRAFT_1405at 1454.200 kb on - strand, within B158DRAFT_1405at 1454.215 kb on - strand, within B158DRAFT_1405at 1454.317 kb on + strand, within B158DRAFT_1405at 1454.330 kb on - strand, within B158DRAFT_1405at 1454.369 kb on + strand, within B158DRAFT_1405at 1454.369 kb on + strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.377 kb on - strand, within B158DRAFT_1405at 1454.420 kb on + strand, within B158DRAFT_1405at 1454.428 kb on - strand, within B158DRAFT_1405at 1454.513 kb on - strand, within B158DRAFT_1405at 1454.514 kb on + strand, within B158DRAFT_1405at 1454.558 kb on + strand, within B158DRAFT_1405at 1454.577 kb on - strand, within B158DRAFT_1405at 1454.616 kb on + strand, within B158DRAFT_1405at 1454.648 kb on + strand, within B158DRAFT_1405at 1454.681 kb on + strand, within B158DRAFT_1405at 1454.681 kb on + strand, within B158DRAFT_1405at 1454.689 kb on + strand, within B158DRAFT_1405at 1454.689 kb on - strand, within B158DRAFT_1405at 1454.696 kb on - strand, within B158DRAFT_1405at 1454.756 kb on + strand, within B158DRAFT_1405at 1454.764 kb on - strand, within B158DRAFT_1405at 1454.849 kb on + strand, within B158DRAFT_1405at 1454.907 kb on - strand, within B158DRAFT_1405at 1455.014 kb on + strandat 1455.035 kb on + strandat 1455.073 kb on - strandat 1455.073 kb on - strandat 1455.073 kb on - strandat 1455.232 kb on - strandat 1455.264 kb on + strandat 1455.269 kb on + strandat 1455.269 kb on + strandat 1455.269 kb on + strandat 1455.269 kb on + strandat 1455.272 kb on + strandat 1455.277 kb on - strandat 1455.277 kb on - strandat 1455.306 kb on + strandat 1455.361 kb on - strandat 1455.521 kb on + strand, within B158DRAFT_1406at 1455.717 kb on + strand, within B158DRAFT_1406at 1455.767 kb on + strand, within B158DRAFT_1406at 1455.791 kb on + strand, within B158DRAFT_1406at 1455.925 kb on + strand, within B158DRAFT_1406at 1455.935 kb on + strand, within B158DRAFT_1406at 1455.956 kb on + strand, within B158DRAFT_1406at 1455.956 kb on + strand, within B158DRAFT_1406at 1455.956 kb on + strand, within B158DRAFT_1406at 1455.956 kb on + strand, within B158DRAFT_1406at 1455.956 kb on + strand, within B158DRAFT_1406at 1455.964 kb on - strand, within B158DRAFT_1406at 1455.964 kb on - strand, within B158DRAFT_1406at 1455.964 kb on - strand, within B158DRAFT_1406at 1455.987 kb on + strand, within B158DRAFT_1406at 1456.034 kb on - strand, within B158DRAFT_1406at 1456.058 kb on + strand, within B158DRAFT_1406at 1456.058 kb on + strand, within B158DRAFT_1406at 1456.068 kb on - strand, within B158DRAFT_1406at 1456.077 kb on + strand, within B158DRAFT_1406at 1456.077 kb on + strand, within B158DRAFT_1406at 1456.077 kb on + strand, within B158DRAFT_1406at 1456.077 kb on + strand, within B158DRAFT_1406at 1456.085 kb on - strand, within B158DRAFT_1406at 1456.085 kb on - strand, within B158DRAFT_1406at 1456.098 kb on - strand, within B158DRAFT_1406at 1456.100 kb on - strand, within B158DRAFT_1406at 1456.162 kb on + strand, within B158DRAFT_1406

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
remove
1,451,093 - B158DRAFT_1404 0.47 -0.0
1,451,187 + B158DRAFT_1404 0.53 -0.9
1,451,323 + B158DRAFT_1404 0.63 -0.6
1,451,343 - B158DRAFT_1404 0.64 -0.8
1,451,355 + B158DRAFT_1404 0.65 -0.6
1,451,465 - B158DRAFT_1404 0.72 -0.3
1,451,516 - B158DRAFT_1404 0.76 -0.1
1,451,712 + B158DRAFT_1404 0.89 +0.0
1,451,759 + -0.0
1,451,853 - -0.3
1,451,909 - +0.4
1,452,046 - -0.8
1,452,121 - -0.6
1,452,123 + -1.1
1,452,123 + -3.9
1,452,131 - -1.3
1,452,131 - -1.3
1,452,156 - -2.8
1,452,216 - -1.4
1,452,292 - -2.3
1,452,292 - -0.9
1,452,292 - -3.1
1,452,292 - -1.9
1,452,292 - -2.9
1,452,292 - -1.9
1,452,358 + -2.3
1,452,403 - B158DRAFT_1405 0.11 -4.1
1,452,403 - B158DRAFT_1405 0.11 -1.7
1,452,443 + B158DRAFT_1405 0.12 -3.1
1,452,487 - B158DRAFT_1405 0.14 -0.7
1,452,620 + B158DRAFT_1405 0.18 -1.5
1,452,628 - B158DRAFT_1405 0.18 -2.7
1,452,642 - B158DRAFT_1405 0.19 -1.6
1,452,657 - B158DRAFT_1405 0.19 -2.2
1,452,695 - B158DRAFT_1405 0.20 -2.8
1,452,722 - B158DRAFT_1405 0.21 -1.4
1,452,722 - B158DRAFT_1405 0.21 -1.5
1,452,731 + B158DRAFT_1405 0.21 -1.8
1,452,732 - B158DRAFT_1405 0.21 -1.9
1,452,737 + B158DRAFT_1405 0.22 -1.5
1,452,737 + B158DRAFT_1405 0.22 -2.5
1,452,738 - B158DRAFT_1405 0.22 -2.9
1,452,745 - B158DRAFT_1405 0.22 -2.1
1,452,745 - B158DRAFT_1405 0.22 -2.0
1,452,793 + B158DRAFT_1405 0.23 -3.8
1,452,850 + B158DRAFT_1405 0.25 -3.1
1,452,850 + B158DRAFT_1405 0.25 -1.3
1,452,850 + B158DRAFT_1405 0.25 -2.5
1,452,858 - B158DRAFT_1405 0.25 -2.2
1,452,865 + B158DRAFT_1405 0.26 -1.3
1,452,904 - B158DRAFT_1405 0.27 -3.3
1,453,013 + B158DRAFT_1405 0.30 -3.2
1,453,013 + B158DRAFT_1405 0.30 -3.5
1,453,014 + B158DRAFT_1405 0.30 -2.9
1,453,015 - B158DRAFT_1405 0.30 -1.5
1,453,015 - B158DRAFT_1405 0.30 -2.5
1,453,021 - B158DRAFT_1405 0.31 -3.8
1,453,021 - B158DRAFT_1405 0.31 -3.5
1,453,027 + B158DRAFT_1405 0.31 -2.5
1,453,027 + B158DRAFT_1405 0.31 -1.6
1,453,027 + B158DRAFT_1405 0.31 -1.9
1,453,027 + B158DRAFT_1405 0.31 -2.3
1,453,027 + B158DRAFT_1405 0.31 -0.5
1,453,035 - B158DRAFT_1405 0.31 -0.2
1,453,035 - B158DRAFT_1405 0.31 -3.1
1,453,035 - B158DRAFT_1405 0.31 -1.8
1,453,035 - B158DRAFT_1405 0.31 -1.8
1,453,035 - B158DRAFT_1405 0.31 -1.7
1,453,036 - B158DRAFT_1405 0.31 -3.5
1,453,067 + B158DRAFT_1405 0.32 -1.2
1,453,067 + B158DRAFT_1405 0.32 -2.7
1,453,075 - B158DRAFT_1405 0.32 -1.6
1,453,100 - B158DRAFT_1405 0.33 -3.2
1,453,153 + B158DRAFT_1405 0.35 -2.3
1,453,161 - B158DRAFT_1405 0.35 -2.8
1,453,228 + B158DRAFT_1405 0.37 -1.3
1,453,236 + B158DRAFT_1405 0.37 -2.2
1,453,297 + B158DRAFT_1405 0.39 -1.2
1,453,297 + B158DRAFT_1405 0.39 -3.2
1,453,305 - B158DRAFT_1405 0.39 -1.4
1,453,305 - B158DRAFT_1405 0.39 -3.1
1,453,310 - B158DRAFT_1405 0.40 -1.2
1,453,312 + B158DRAFT_1405 0.40 -1.7
1,453,312 + B158DRAFT_1405 0.40 -0.8
1,453,312 + B158DRAFT_1405 0.40 -1.8
1,453,312 + B158DRAFT_1405 0.40 -1.5
1,453,312 + B158DRAFT_1405 0.40 -1.5
1,453,320 - B158DRAFT_1405 0.40 +0.0
1,453,320 - B158DRAFT_1405 0.40 -1.8
1,453,320 - B158DRAFT_1405 0.40 -2.3
1,453,320 - B158DRAFT_1405 0.40 -2.1
1,453,320 - B158DRAFT_1405 0.40 -1.7
1,453,320 - B158DRAFT_1405 0.40 -3.1
1,453,325 - B158DRAFT_1405 0.40 -2.6
1,453,375 - B158DRAFT_1405 0.42 -2.2
1,453,375 - B158DRAFT_1405 0.42 -1.2
1,453,384 + B158DRAFT_1405 0.42 -2.8
1,453,406 - B158DRAFT_1405 0.43 -0.2
1,453,412 + B158DRAFT_1405 0.43 -2.3
1,453,437 + B158DRAFT_1405 0.44 -2.3
1,453,445 - B158DRAFT_1405 0.44 -3.2
1,453,446 + B158DRAFT_1405 0.44 -2.0
1,453,448 + B158DRAFT_1405 0.44 -0.9
1,453,456 + B158DRAFT_1405 0.44 -1.7
1,453,462 + B158DRAFT_1405 0.44 -2.1
1,453,529 - B158DRAFT_1405 0.46 -2.2
1,453,530 - B158DRAFT_1405 0.47 -3.3
1,453,581 + B158DRAFT_1405 0.48 -1.8
1,453,590 + B158DRAFT_1405 0.48 -2.0
1,453,622 + B158DRAFT_1405 0.49 -2.1
1,453,655 + B158DRAFT_1405 0.50 -0.9
1,453,873 + B158DRAFT_1405 0.57 -2.9
1,453,901 - B158DRAFT_1405 0.58 -1.5
1,453,916 - B158DRAFT_1405 0.59 -1.1
1,453,935 - B158DRAFT_1405 0.59 -2.4
1,453,936 - B158DRAFT_1405 0.59 -1.2
1,453,958 - B158DRAFT_1405 0.60 -2.8
1,454,080 + B158DRAFT_1405 0.64 -1.7
1,454,099 + B158DRAFT_1405 0.64 -1.5
1,454,102 - B158DRAFT_1405 0.64 -1.7
1,454,107 - B158DRAFT_1405 0.65 -2.9
1,454,107 - B158DRAFT_1405 0.65 -1.2
1,454,107 - B158DRAFT_1405 0.65 -2.6
1,454,126 - B158DRAFT_1405 0.65 -2.8
1,454,187 - B158DRAFT_1405 0.67 -2.1
1,454,200 - B158DRAFT_1405 0.68 -1.8
1,454,200 - B158DRAFT_1405 0.68 -1.2
1,454,215 - B158DRAFT_1405 0.68 -1.7
1,454,317 + B158DRAFT_1405 0.71 -2.1
1,454,330 - B158DRAFT_1405 0.72 -3.2
1,454,369 + B158DRAFT_1405 0.73 -1.2
1,454,369 + B158DRAFT_1405 0.73 -1.8
1,454,377 - B158DRAFT_1405 0.73 -1.6
1,454,377 - B158DRAFT_1405 0.73 -2.7
1,454,377 - B158DRAFT_1405 0.73 -2.5
1,454,377 - B158DRAFT_1405 0.73 -2.0
1,454,377 - B158DRAFT_1405 0.73 -3.3
1,454,377 - B158DRAFT_1405 0.73 -2.1
1,454,377 - B158DRAFT_1405 0.73 -1.2
1,454,377 - B158DRAFT_1405 0.73 -1.7
1,454,420 + B158DRAFT_1405 0.74 -2.3
1,454,428 - B158DRAFT_1405 0.75 -2.2
1,454,513 - B158DRAFT_1405 0.77 -2.9
1,454,514 + B158DRAFT_1405 0.77 -3.0
1,454,558 + B158DRAFT_1405 0.79 -1.0
1,454,577 - B158DRAFT_1405 0.79 -1.4
1,454,616 + B158DRAFT_1405 0.81 -1.7
1,454,648 + B158DRAFT_1405 0.82 -3.1
1,454,681 + B158DRAFT_1405 0.83 -1.7
1,454,681 + B158DRAFT_1405 0.83 -2.7
1,454,689 + B158DRAFT_1405 0.83 -3.5
1,454,689 - B158DRAFT_1405 0.83 -4.7
1,454,696 - B158DRAFT_1405 0.83 -2.5
1,454,756 + B158DRAFT_1405 0.85 -2.8
1,454,764 - B158DRAFT_1405 0.85 -1.5
1,454,849 + B158DRAFT_1405 0.88 -2.0
1,454,907 - B158DRAFT_1405 0.90 -2.1
1,455,014 + -3.8
1,455,035 + -1.9
1,455,073 - -3.2
1,455,073 - -2.3
1,455,073 - -2.7
1,455,232 - -2.5
1,455,264 + -3.1
1,455,269 + -3.5
1,455,269 + -2.5
1,455,269 + -2.5
1,455,269 + -3.6
1,455,272 + -2.0
1,455,277 - -2.5
1,455,277 - -2.6
1,455,306 + -3.2
1,455,361 - -2.2
1,455,521 + B158DRAFT_1406 0.23 -2.1
1,455,717 + B158DRAFT_1406 0.39 -1.3
1,455,767 + B158DRAFT_1406 0.43 -3.6
1,455,791 + B158DRAFT_1406 0.45 -1.5
1,455,925 + B158DRAFT_1406 0.56 -1.2
1,455,935 + B158DRAFT_1406 0.57 -1.8
1,455,956 + B158DRAFT_1406 0.58 -2.3
1,455,956 + B158DRAFT_1406 0.58 -3.5
1,455,956 + B158DRAFT_1406 0.58 -2.3
1,455,956 + B158DRAFT_1406 0.58 -3.7
1,455,956 + B158DRAFT_1406 0.58 -2.5
1,455,964 - B158DRAFT_1406 0.59 -1.4
1,455,964 - B158DRAFT_1406 0.59 -4.6
1,455,964 - B158DRAFT_1406 0.59 -3.3
1,455,987 + B158DRAFT_1406 0.61 -4.4
1,456,034 - B158DRAFT_1406 0.65 -3.2
1,456,058 + B158DRAFT_1406 0.67 -3.5
1,456,058 + B158DRAFT_1406 0.67 -0.7
1,456,068 - B158DRAFT_1406 0.68 -1.7
1,456,077 + B158DRAFT_1406 0.68 -1.5
1,456,077 + B158DRAFT_1406 0.68 -2.6
1,456,077 + B158DRAFT_1406 0.68 -2.5
1,456,077 + B158DRAFT_1406 0.68 -2.1
1,456,085 - B158DRAFT_1406 0.69 -3.0
1,456,085 - B158DRAFT_1406 0.69 -3.1
1,456,098 - B158DRAFT_1406 0.70 -1.6
1,456,100 - B158DRAFT_1406 0.70 -3.3
1,456,162 + B158DRAFT_1406 0.75 -2.2

Or see this region's nucleotide sequence