Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0759

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0758 and B158DRAFT_0759 overlap by 1 nucleotidesB158DRAFT_0759 and B158DRAFT_0760 overlap by 1 nucleotidesB158DRAFT_0760 and B158DRAFT_0761 overlap by 4 nucleotides B158DRAFT_0758: B158DRAFT_0758 - type IV pilus assembly protein PilM, at 765,176 to 766,243 _0758 B158DRAFT_0759: B158DRAFT_0759 - Tfp pilus assembly protein PilN, at 766,243 to 766,818 _0759 B158DRAFT_0760: B158DRAFT_0760 - Tfp pilus assembly protein PilO, at 766,818 to 767,447 _0760 B158DRAFT_0761: B158DRAFT_0761 - Tfp pilus assembly protein PilP, at 767,444 to 768,004 _0761 Position (kb) 766 767Strain fitness (log2 ratio) -1 0 1 2 3at 765.318 kb on + strand, within B158DRAFT_0758at 765.467 kb on + strand, within B158DRAFT_0758at 765.471 kb on + strand, within B158DRAFT_0758at 765.510 kb on - strand, within B158DRAFT_0758at 765.510 kb on - strand, within B158DRAFT_0758at 765.525 kb on - strand, within B158DRAFT_0758at 765.541 kb on + strand, within B158DRAFT_0758at 765.568 kb on - strand, within B158DRAFT_0758at 765.743 kb on - strand, within B158DRAFT_0758at 765.785 kb on + strand, within B158DRAFT_0758at 765.795 kb on + strand, within B158DRAFT_0758at 765.795 kb on + strand, within B158DRAFT_0758at 765.795 kb on + strand, within B158DRAFT_0758at 765.841 kb on + strand, within B158DRAFT_0758at 765.951 kb on + strand, within B158DRAFT_0758at 766.010 kb on - strand, within B158DRAFT_0758at 766.177 kb on + strandat 766.177 kb on + strandat 766.185 kb on - strandat 766.575 kb on - strand, within B158DRAFT_0759at 766.577 kb on + strand, within B158DRAFT_0759at 766.585 kb on - strand, within B158DRAFT_0759at 766.731 kb on + strand, within B158DRAFT_0759at 766.778 kb on - strandat 766.810 kb on + strandat 766.899 kb on + strand, within B158DRAFT_0760at 766.954 kb on + strand, within B158DRAFT_0760at 766.956 kb on + strand, within B158DRAFT_0760at 766.957 kb on - strand, within B158DRAFT_0760at 766.962 kb on - strand, within B158DRAFT_0760at 766.964 kb on - strand, within B158DRAFT_0760at 766.973 kb on + strand, within B158DRAFT_0760at 766.973 kb on + strand, within B158DRAFT_0760at 766.973 kb on + strand, within B158DRAFT_0760at 766.973 kb on + strand, within B158DRAFT_0760at 767.036 kb on + strand, within B158DRAFT_0760at 767.036 kb on + strand, within B158DRAFT_0760at 767.079 kb on - strand, within B158DRAFT_0760at 767.158 kb on + strand, within B158DRAFT_0760at 767.599 kb on + strand, within B158DRAFT_0761at 767.628 kb on - strand, within B158DRAFT_0761at 767.644 kb on - strand, within B158DRAFT_0761at 767.659 kb on + strand, within B158DRAFT_0761

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
remove
765,318 + B158DRAFT_0758 0.13 +0.9
765,467 + B158DRAFT_0758 0.27 +1.0
765,471 + B158DRAFT_0758 0.28 +0.5
765,510 - B158DRAFT_0758 0.31 +0.5
765,510 - B158DRAFT_0758 0.31 +1.2
765,525 - B158DRAFT_0758 0.33 +3.1
765,541 + B158DRAFT_0758 0.34 +1.7
765,568 - B158DRAFT_0758 0.37 +0.5
765,743 - B158DRAFT_0758 0.53 +0.7
765,785 + B158DRAFT_0758 0.57 +1.1
765,795 + B158DRAFT_0758 0.58 +0.8
765,795 + B158DRAFT_0758 0.58 +1.1
765,795 + B158DRAFT_0758 0.58 +1.8
765,841 + B158DRAFT_0758 0.62 +0.8
765,951 + B158DRAFT_0758 0.73 +1.9
766,010 - B158DRAFT_0758 0.78 +1.6
766,177 + +1.5
766,177 + +1.3
766,185 - +1.4
766,575 - B158DRAFT_0759 0.58 +0.3
766,577 + B158DRAFT_0759 0.58 +1.3
766,585 - B158DRAFT_0759 0.59 +0.9
766,731 + B158DRAFT_0759 0.85 +1.4
766,778 - +0.4
766,810 + +1.0
766,899 + B158DRAFT_0760 0.13 +1.2
766,954 + B158DRAFT_0760 0.22 +0.6
766,956 + B158DRAFT_0760 0.22 +1.6
766,957 - B158DRAFT_0760 0.22 +1.2
766,962 - B158DRAFT_0760 0.23 +1.1
766,964 - B158DRAFT_0760 0.23 +0.5
766,973 + B158DRAFT_0760 0.25 +0.8
766,973 + B158DRAFT_0760 0.25 +1.2
766,973 + B158DRAFT_0760 0.25 +1.7
766,973 + B158DRAFT_0760 0.25 +1.2
767,036 + B158DRAFT_0760 0.35 -0.3
767,036 + B158DRAFT_0760 0.35 +0.4
767,079 - B158DRAFT_0760 0.41 +0.6
767,158 + B158DRAFT_0760 0.54 +0.7
767,599 + B158DRAFT_0761 0.28 +0.9
767,628 - B158DRAFT_0761 0.33 +1.0
767,644 - B158DRAFT_0761 0.36 +0.7
767,659 + B158DRAFT_0761 0.38 -0.1

Or see this region's nucleotide sequence