Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0715

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0713 and B158DRAFT_0714 are separated by 0 nucleotidesB158DRAFT_0714 and B158DRAFT_0715 overlap by 4 nucleotidesB158DRAFT_0715 and B158DRAFT_0716 are separated by 92 nucleotidesB158DRAFT_0716 and B158DRAFT_0717 are separated by 122 nucleotides B158DRAFT_0713: B158DRAFT_0713 - rRNA methylase, putative, group 2, at 712,467 to 712,928 _0713 B158DRAFT_0714: B158DRAFT_0714 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 712,929 to 713,537 _0714 B158DRAFT_0715: B158DRAFT_0715 - Signal transduction histidine kinase, nitrogen specific, at 713,534 to 714,595 _0715 B158DRAFT_0716: B158DRAFT_0716 - hypothetical protein, at 714,688 to 715,239 _0716 B158DRAFT_0717: B158DRAFT_0717 - glutamine synthetase, type I, at 715,362 to 716,771 _0717 Position (kb) 713 714 715Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 712.536 kb on + strand, within B158DRAFT_0713at 712.543 kb on - strand, within B158DRAFT_0713at 712.543 kb on - strand, within B158DRAFT_0713at 712.585 kb on + strand, within B158DRAFT_0713at 712.616 kb on - strand, within B158DRAFT_0713at 712.725 kb on + strand, within B158DRAFT_0713at 712.753 kb on + strand, within B158DRAFT_0713at 712.778 kb on + strand, within B158DRAFT_0713at 712.779 kb on + strand, within B158DRAFT_0713at 712.779 kb on + strand, within B158DRAFT_0713at 712.779 kb on + strand, within B158DRAFT_0713at 712.779 kb on + strand, within B158DRAFT_0713at 712.779 kb on + strand, within B158DRAFT_0713at 712.787 kb on - strand, within B158DRAFT_0713at 712.938 kb on + strandat 712.961 kb on - strandat 712.961 kb on - strandat 712.969 kb on - strandat 713.090 kb on - strand, within B158DRAFT_0714at 713.104 kb on + strand, within B158DRAFT_0714at 713.109 kb on + strand, within B158DRAFT_0714at 713.158 kb on + strand, within B158DRAFT_0714at 713.175 kb on + strand, within B158DRAFT_0714at 713.175 kb on + strand, within B158DRAFT_0714at 713.183 kb on - strand, within B158DRAFT_0714at 713.207 kb on + strand, within B158DRAFT_0714at 713.214 kb on + strand, within B158DRAFT_0714at 713.215 kb on - strand, within B158DRAFT_0714at 713.249 kb on + strand, within B158DRAFT_0714at 713.249 kb on + strand, within B158DRAFT_0714at 713.342 kb on + strand, within B158DRAFT_0714at 713.342 kb on + strand, within B158DRAFT_0714at 713.342 kb on + strand, within B158DRAFT_0714at 713.365 kb on + strand, within B158DRAFT_0714at 713.401 kb on + strand, within B158DRAFT_0714at 713.401 kb on + strand, within B158DRAFT_0714at 713.401 kb on + strand, within B158DRAFT_0714at 713.401 kb on + strand, within B158DRAFT_0714at 713.401 kb on + strand, within B158DRAFT_0714at 713.409 kb on - strand, within B158DRAFT_0714at 713.409 kb on - strand, within B158DRAFT_0714at 713.409 kb on - strand, within B158DRAFT_0714at 713.409 kb on - strand, within B158DRAFT_0714at 713.409 kb on - strand, within B158DRAFT_0714at 713.409 kb on - strand, within B158DRAFT_0714at 713.412 kb on + strand, within B158DRAFT_0714at 713.439 kb on + strand, within B158DRAFT_0714at 713.446 kb on + strand, within B158DRAFT_0714at 713.446 kb on + strand, within B158DRAFT_0714at 713.454 kb on - strand, within B158DRAFT_0714at 713.466 kb on - strand, within B158DRAFT_0714at 713.475 kb on + strand, within B158DRAFT_0714at 713.483 kb on - strandat 713.646 kb on - strand, within B158DRAFT_0715at 713.736 kb on + strand, within B158DRAFT_0715at 713.764 kb on + strand, within B158DRAFT_0715at 713.772 kb on - strand, within B158DRAFT_0715at 713.874 kb on + strand, within B158DRAFT_0715at 713.874 kb on + strand, within B158DRAFT_0715at 713.876 kb on + strand, within B158DRAFT_0715at 713.882 kb on - strand, within B158DRAFT_0715at 713.882 kb on - strand, within B158DRAFT_0715at 713.882 kb on - strand, within B158DRAFT_0715at 713.882 kb on - strand, within B158DRAFT_0715at 713.882 kb on - strand, within B158DRAFT_0715at 713.882 kb on - strand, within B158DRAFT_0715at 713.882 kb on - strand, within B158DRAFT_0715at 714.025 kb on - strand, within B158DRAFT_0715at 714.237 kb on + strand, within B158DRAFT_0715at 714.251 kb on - strand, within B158DRAFT_0715at 714.259 kb on + strand, within B158DRAFT_0715at 714.259 kb on + strand, within B158DRAFT_0715at 714.294 kb on + strand, within B158DRAFT_0715at 714.294 kb on + strand, within B158DRAFT_0715at 714.294 kb on + strand, within B158DRAFT_0715at 714.302 kb on - strand, within B158DRAFT_0715at 714.302 kb on - strand, within B158DRAFT_0715at 714.478 kb on + strand, within B158DRAFT_0715at 714.478 kb on + strand, within B158DRAFT_0715at 714.486 kb on - strand, within B158DRAFT_0715at 714.548 kb on - strandat 714.548 kb on - strandat 714.561 kb on + strandat 714.566 kb on - strandat 714.569 kb on - strandat 714.628 kb on - strandat 714.677 kb on - strandat 714.694 kb on + strandat 714.694 kb on + strandat 714.694 kb on + strandat 714.694 kb on + strandat 714.694 kb on + strandat 714.699 kb on + strandat 714.699 kb on + strandat 714.699 kb on + strandat 714.699 kb on + strandat 714.702 kb on - strandat 714.702 kb on - strandat 714.702 kb on - strandat 714.702 kb on - strandat 714.702 kb on - strandat 714.702 kb on - strandat 714.702 kb on - strandat 714.702 kb on - strandat 714.702 kb on - strandat 714.702 kb on - strandat 714.707 kb on - strandat 714.707 kb on - strandat 714.715 kb on - strandat 714.724 kb on + strandat 714.739 kb on + strandat 714.789 kb on + strand, within B158DRAFT_0716at 714.789 kb on + strand, within B158DRAFT_0716at 714.809 kb on - strand, within B158DRAFT_0716at 714.849 kb on + strand, within B158DRAFT_0716at 714.849 kb on + strand, within B158DRAFT_0716at 714.857 kb on - strand, within B158DRAFT_0716at 714.887 kb on + strand, within B158DRAFT_0716at 714.900 kb on + strand, within B158DRAFT_0716at 714.900 kb on + strand, within B158DRAFT_0716at 714.900 kb on + strand, within B158DRAFT_0716at 714.900 kb on + strand, within B158DRAFT_0716at 714.900 kb on + strand, within B158DRAFT_0716at 714.908 kb on - strand, within B158DRAFT_0716at 714.908 kb on - strand, within B158DRAFT_0716at 714.908 kb on - strand, within B158DRAFT_0716at 714.908 kb on - strand, within B158DRAFT_0716at 714.910 kb on - strand, within B158DRAFT_0716at 715.013 kb on + strand, within B158DRAFT_0716at 715.180 kb on + strand, within B158DRAFT_0716at 715.252 kb on + strandat 715.252 kb on + strandat 715.260 kb on - strandat 715.278 kb on + strandat 715.278 kb on + strandat 715.286 kb on - strandat 715.286 kb on - strandat 715.286 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
remove
712,536 + B158DRAFT_0713 0.15 +0.3
712,543 - B158DRAFT_0713 0.16 +0.1
712,543 - B158DRAFT_0713 0.16 +0.2
712,585 + B158DRAFT_0713 0.26 -0.0
712,616 - B158DRAFT_0713 0.32 -0.4
712,725 + B158DRAFT_0713 0.56 -0.2
712,753 + B158DRAFT_0713 0.62 +0.0
712,778 + B158DRAFT_0713 0.67 +0.4
712,779 + B158DRAFT_0713 0.68 +0.3
712,779 + B158DRAFT_0713 0.68 -1.1
712,779 + B158DRAFT_0713 0.68 +0.7
712,779 + B158DRAFT_0713 0.68 -0.2
712,779 + B158DRAFT_0713 0.68 -0.5
712,787 - B158DRAFT_0713 0.69 -0.2
712,938 + -0.2
712,961 - -1.1
712,961 - -1.1
712,969 - -3.0
713,090 - B158DRAFT_0714 0.26 -2.0
713,104 + B158DRAFT_0714 0.29 +0.1
713,109 + B158DRAFT_0714 0.30 -0.4
713,158 + B158DRAFT_0714 0.38 -2.0
713,175 + B158DRAFT_0714 0.40 -1.0
713,175 + B158DRAFT_0714 0.40 -1.7
713,183 - B158DRAFT_0714 0.42 -2.3
713,207 + B158DRAFT_0714 0.46 -0.9
713,214 + B158DRAFT_0714 0.47 -2.3
713,215 - B158DRAFT_0714 0.47 -2.1
713,249 + B158DRAFT_0714 0.53 -2.7
713,249 + B158DRAFT_0714 0.53 -2.0
713,342 + B158DRAFT_0714 0.68 -1.7
713,342 + B158DRAFT_0714 0.68 -1.0
713,342 + B158DRAFT_0714 0.68 -0.7
713,365 + B158DRAFT_0714 0.72 -2.2
713,401 + B158DRAFT_0714 0.78 -1.9
713,401 + B158DRAFT_0714 0.78 -1.5
713,401 + B158DRAFT_0714 0.78 -1.2
713,401 + B158DRAFT_0714 0.78 -2.6
713,401 + B158DRAFT_0714 0.78 -2.0
713,409 - B158DRAFT_0714 0.79 -2.0
713,409 - B158DRAFT_0714 0.79 -2.3
713,409 - B158DRAFT_0714 0.79 -1.3
713,409 - B158DRAFT_0714 0.79 -2.1
713,409 - B158DRAFT_0714 0.79 -0.8
713,409 - B158DRAFT_0714 0.79 -2.7
713,412 + B158DRAFT_0714 0.79 -1.1
713,439 + B158DRAFT_0714 0.84 -1.4
713,446 + B158DRAFT_0714 0.85 -2.6
713,446 + B158DRAFT_0714 0.85 -1.3
713,454 - B158DRAFT_0714 0.86 -1.2
713,466 - B158DRAFT_0714 0.88 -1.7
713,475 + B158DRAFT_0714 0.90 -1.7
713,483 - -1.2
713,646 - B158DRAFT_0715 0.11 -0.4
713,736 + B158DRAFT_0715 0.19 -0.7
713,764 + B158DRAFT_0715 0.22 -1.1
713,772 - B158DRAFT_0715 0.22 -1.0
713,874 + B158DRAFT_0715 0.32 -0.5
713,874 + B158DRAFT_0715 0.32 -2.0
713,876 + B158DRAFT_0715 0.32 -2.2
713,882 - B158DRAFT_0715 0.33 -0.2
713,882 - B158DRAFT_0715 0.33 -1.6
713,882 - B158DRAFT_0715 0.33 -1.1
713,882 - B158DRAFT_0715 0.33 -0.8
713,882 - B158DRAFT_0715 0.33 -0.1
713,882 - B158DRAFT_0715 0.33 -0.7
713,882 - B158DRAFT_0715 0.33 -0.8
714,025 - B158DRAFT_0715 0.46 -1.8
714,237 + B158DRAFT_0715 0.66 -2.2
714,251 - B158DRAFT_0715 0.68 -0.4
714,259 + B158DRAFT_0715 0.68 -3.1
714,259 + B158DRAFT_0715 0.68 -1.8
714,294 + B158DRAFT_0715 0.72 -1.6
714,294 + B158DRAFT_0715 0.72 -1.8
714,294 + B158DRAFT_0715 0.72 -3.3
714,302 - B158DRAFT_0715 0.72 -0.2
714,302 - B158DRAFT_0715 0.72 +0.1
714,478 + B158DRAFT_0715 0.89 -1.7
714,478 + B158DRAFT_0715 0.89 -2.1
714,486 - B158DRAFT_0715 0.90 -1.7
714,548 - +0.2
714,548 - -1.5
714,561 + -2.2
714,566 - -0.1
714,569 - -0.6
714,628 - -0.4
714,677 - -0.1
714,694 + +0.4
714,694 + -0.1
714,694 + +0.1
714,694 + -0.8
714,694 + +0.6
714,699 + -0.3
714,699 + -0.1
714,699 + -0.2
714,699 + +0.1
714,702 - -0.1
714,702 - -0.3
714,702 - -0.3
714,702 - +0.0
714,702 - -0.1
714,702 - -0.1
714,702 - -1.0
714,702 - -0.2
714,702 - +0.2
714,702 - -0.2
714,707 - -0.5
714,707 - -1.3
714,715 - +0.1
714,724 + -0.3
714,739 + -0.4
714,789 + B158DRAFT_0716 0.18 +1.9
714,789 + B158DRAFT_0716 0.18 -0.3
714,809 - B158DRAFT_0716 0.22 +0.4
714,849 + B158DRAFT_0716 0.29 -0.0
714,849 + B158DRAFT_0716 0.29 -0.2
714,857 - B158DRAFT_0716 0.31 -0.2
714,887 + B158DRAFT_0716 0.36 -0.0
714,900 + B158DRAFT_0716 0.38 -0.3
714,900 + B158DRAFT_0716 0.38 -0.6
714,900 + B158DRAFT_0716 0.38 +0.5
714,900 + B158DRAFT_0716 0.38 +0.3
714,900 + B158DRAFT_0716 0.38 -0.1
714,908 - B158DRAFT_0716 0.40 -0.9
714,908 - B158DRAFT_0716 0.40 +0.4
714,908 - B158DRAFT_0716 0.40 -0.7
714,908 - B158DRAFT_0716 0.40 -0.7
714,910 - B158DRAFT_0716 0.40 +0.3
715,013 + B158DRAFT_0716 0.59 +0.1
715,180 + B158DRAFT_0716 0.89 +0.2
715,252 + -0.5
715,252 + +0.0
715,260 - +0.5
715,278 + -0.2
715,278 + -0.5
715,286 - +0.2
715,286 - +0.1
715,286 - -0.6

Or see this region's nucleotide sequence