Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0674

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0671 and B158DRAFT_0672 are separated by 18 nucleotidesB158DRAFT_0672 and B158DRAFT_0674 are separated by 285 nucleotidesB158DRAFT_0674 and B158DRAFT_0675 are separated by 23 nucleotides B158DRAFT_0671: B158DRAFT_0671 - protoheme IX farnesyltransferase, at 673,968 to 674,915 _0671 B158DRAFT_0672: B158DRAFT_0672 - Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems, at 674,934 to 675,584 _0672 B158DRAFT_0674: B158DRAFT_0674 - putative efflux protein, MATE family, at 675,870 to 677,246 _0674 B158DRAFT_0675: B158DRAFT_0675 - ADP-heptose:LPS heptosyltransferase, at 677,270 to 678,298 _0675 Position (kb) 675 676 677 678Strain fitness (log2 ratio) -3 -2 -1 0 1at 675.105 kb on + strand, within B158DRAFT_0672at 675.172 kb on + strand, within B158DRAFT_0672at 675.180 kb on - strand, within B158DRAFT_0672at 675.180 kb on - strand, within B158DRAFT_0672at 675.244 kb on + strand, within B158DRAFT_0672at 675.341 kb on + strand, within B158DRAFT_0672at 675.479 kb on - strand, within B158DRAFT_0672at 675.492 kb on + strand, within B158DRAFT_0672at 675.492 kb on + strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.500 kb on - strand, within B158DRAFT_0672at 675.519 kb on + strand, within B158DRAFT_0672at 675.519 kb on + strand, within B158DRAFT_0672at 675.527 kb on - strandat 675.527 kb on - strandat 675.535 kb on + strandat 675.550 kb on - strandat 675.586 kb on - strandat 675.785 kb on - strandat 675.850 kb on - strandat 675.869 kb on - strandat 675.883 kb on - strandat 675.903 kb on + strandat 675.913 kb on + strandat 675.913 kb on + strandat 675.918 kb on + strandat 675.921 kb on - strandat 676.054 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.127 kb on + strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.135 kb on - strand, within B158DRAFT_0674at 676.155 kb on + strand, within B158DRAFT_0674at 676.189 kb on + strand, within B158DRAFT_0674at 676.252 kb on + strand, within B158DRAFT_0674at 676.280 kb on - strand, within B158DRAFT_0674at 676.284 kb on + strand, within B158DRAFT_0674at 676.285 kb on - strand, within B158DRAFT_0674at 676.302 kb on + strand, within B158DRAFT_0674at 676.310 kb on - strand, within B158DRAFT_0674at 676.447 kb on + strand, within B158DRAFT_0674at 676.468 kb on + strand, within B158DRAFT_0674at 676.476 kb on - strand, within B158DRAFT_0674at 676.478 kb on + strand, within B158DRAFT_0674at 676.481 kb on - strand, within B158DRAFT_0674at 676.497 kb on - strand, within B158DRAFT_0674at 676.507 kb on - strand, within B158DRAFT_0674at 676.512 kb on - strand, within B158DRAFT_0674at 676.672 kb on + strand, within B158DRAFT_0674at 676.672 kb on + strand, within B158DRAFT_0674at 676.672 kb on + strand, within B158DRAFT_0674at 676.672 kb on + strand, within B158DRAFT_0674at 676.672 kb on + strand, within B158DRAFT_0674at 676.672 kb on + strand, within B158DRAFT_0674at 676.672 kb on + strand, within B158DRAFT_0674at 676.680 kb on - strand, within B158DRAFT_0674at 676.680 kb on - strand, within B158DRAFT_0674at 676.680 kb on - strand, within B158DRAFT_0674at 676.794 kb on + strand, within B158DRAFT_0674at 676.826 kb on + strand, within B158DRAFT_0674at 676.851 kb on + strand, within B158DRAFT_0674at 676.930 kb on + strand, within B158DRAFT_0674at 676.942 kb on + strand, within B158DRAFT_0674at 676.943 kb on + strand, within B158DRAFT_0674at 676.943 kb on + strand, within B158DRAFT_0674at 676.950 kb on - strand, within B158DRAFT_0674at 676.951 kb on - strand, within B158DRAFT_0674at 676.951 kb on - strand, within B158DRAFT_0674at 677.067 kb on + strand, within B158DRAFT_0674at 677.078 kb on - strand, within B158DRAFT_0674at 677.078 kb on - strand, within B158DRAFT_0674at 677.143 kb on + strandat 677.151 kb on - strandat 677.175 kb on - strandat 677.179 kb on + strandat 677.179 kb on + strandat 677.187 kb on - strandat 677.227 kb on - strandat 677.352 kb on + strandat 677.352 kb on + strandat 677.398 kb on - strand, within B158DRAFT_0675at 677.407 kb on + strand, within B158DRAFT_0675at 677.415 kb on - strand, within B158DRAFT_0675at 677.522 kb on + strand, within B158DRAFT_0675at 677.522 kb on + strand, within B158DRAFT_0675at 677.530 kb on - strand, within B158DRAFT_0675at 677.662 kb on - strand, within B158DRAFT_0675at 677.705 kb on + strand, within B158DRAFT_0675at 677.705 kb on + strand, within B158DRAFT_0675at 677.715 kb on + strand, within B158DRAFT_0675at 677.725 kb on - strand, within B158DRAFT_0675at 677.746 kb on - strand, within B158DRAFT_0675at 677.780 kb on + strand, within B158DRAFT_0675at 677.787 kb on + strand, within B158DRAFT_0675at 677.795 kb on - strand, within B158DRAFT_0675at 677.795 kb on - strand, within B158DRAFT_0675at 677.827 kb on + strand, within B158DRAFT_0675at 677.855 kb on - strand, within B158DRAFT_0675at 678.005 kb on + strand, within B158DRAFT_0675at 678.065 kb on + strand, within B158DRAFT_0675at 678.073 kb on - strand, within B158DRAFT_0675at 678.096 kb on + strand, within B158DRAFT_0675at 678.096 kb on + strand, within B158DRAFT_0675at 678.096 kb on + strand, within B158DRAFT_0675at 678.126 kb on + strand, within B158DRAFT_0675at 678.144 kb on - strand, within B158DRAFT_0675at 678.144 kb on - strand, within B158DRAFT_0675at 678.167 kb on + strand, within B158DRAFT_0675at 678.167 kb on - strand, within B158DRAFT_0675at 678.175 kb on - strand, within B158DRAFT_0675at 678.218 kb on + strandat 678.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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675,105 + B158DRAFT_0672 0.26 -1.5
675,172 + B158DRAFT_0672 0.37 -1.8
675,180 - B158DRAFT_0672 0.38 -2.6
675,180 - B158DRAFT_0672 0.38 -2.9
675,244 + B158DRAFT_0672 0.48 -1.2
675,341 + B158DRAFT_0672 0.63 -2.2
675,479 - B158DRAFT_0672 0.84 -1.7
675,492 + B158DRAFT_0672 0.86 -2.3
675,492 + B158DRAFT_0672 0.86 -1.8
675,500 - B158DRAFT_0672 0.87 -1.2
675,500 - B158DRAFT_0672 0.87 -1.3
675,500 - B158DRAFT_0672 0.87 -1.9
675,519 + B158DRAFT_0672 0.90 -2.0
675,519 + B158DRAFT_0672 0.90 -1.9
675,527 - -3.1
675,527 - -1.8
675,535 + -0.6
675,550 - -1.9
675,586 - -0.7
675,785 - -0.5
675,850 - -1.2
675,869 - +0.3
675,883 - -0.3
675,903 + -0.1
675,913 + +0.3
675,913 + -0.3
675,918 + -0.1
675,921 - -0.5
676,054 + B158DRAFT_0674 0.13 -0.4
676,127 + B158DRAFT_0674 0.19 -0.3
676,127 + B158DRAFT_0674 0.19 +0.7
676,127 + B158DRAFT_0674 0.19 +0.1
676,127 + B158DRAFT_0674 0.19 +0.3
676,127 + B158DRAFT_0674 0.19 -0.5
676,127 + B158DRAFT_0674 0.19 -0.9
676,127 + B158DRAFT_0674 0.19 -0.2
676,127 + B158DRAFT_0674 0.19 -0.2
676,127 + B158DRAFT_0674 0.19 -0.3
676,127 + B158DRAFT_0674 0.19 +0.4
676,127 + B158DRAFT_0674 0.19 -0.7
676,127 + B158DRAFT_0674 0.19 +0.1
676,127 + B158DRAFT_0674 0.19 -0.4
676,135 - B158DRAFT_0674 0.19 +0.2
676,135 - B158DRAFT_0674 0.19 +0.1
676,135 - B158DRAFT_0674 0.19 +1.0
676,135 - B158DRAFT_0674 0.19 -0.6
676,135 - B158DRAFT_0674 0.19 -0.4
676,135 - B158DRAFT_0674 0.19 +0.3
676,135 - B158DRAFT_0674 0.19 -1.5
676,135 - B158DRAFT_0674 0.19 -0.4
676,135 - B158DRAFT_0674 0.19 -0.3
676,135 - B158DRAFT_0674 0.19 +0.0
676,155 + B158DRAFT_0674 0.21 -0.3
676,189 + B158DRAFT_0674 0.23 -0.1
676,252 + B158DRAFT_0674 0.28 -0.9
676,280 - B158DRAFT_0674 0.30 +0.1
676,284 + B158DRAFT_0674 0.30 -0.3
676,285 - B158DRAFT_0674 0.30 -0.3
676,302 + B158DRAFT_0674 0.31 +0.5
676,310 - B158DRAFT_0674 0.32 -1.4
676,447 + B158DRAFT_0674 0.42 -0.4
676,468 + B158DRAFT_0674 0.43 -0.8
676,476 - B158DRAFT_0674 0.44 -0.4
676,478 + B158DRAFT_0674 0.44 -0.6
676,481 - B158DRAFT_0674 0.44 -0.5
676,497 - B158DRAFT_0674 0.46 +0.0
676,507 - B158DRAFT_0674 0.46 -0.1
676,512 - B158DRAFT_0674 0.47 +0.3
676,672 + B158DRAFT_0674 0.58 -0.3
676,672 + B158DRAFT_0674 0.58 -0.9
676,672 + B158DRAFT_0674 0.58 -0.6
676,672 + B158DRAFT_0674 0.58 -0.7
676,672 + B158DRAFT_0674 0.58 +0.2
676,672 + B158DRAFT_0674 0.58 -0.3
676,672 + B158DRAFT_0674 0.58 -0.8
676,680 - B158DRAFT_0674 0.59 -0.1
676,680 - B158DRAFT_0674 0.59 +0.1
676,680 - B158DRAFT_0674 0.59 +0.1
676,794 + B158DRAFT_0674 0.67 -0.3
676,826 + B158DRAFT_0674 0.69 -0.1
676,851 + B158DRAFT_0674 0.71 -0.6
676,930 + B158DRAFT_0674 0.77 -0.6
676,942 + B158DRAFT_0674 0.78 -1.0
676,943 + B158DRAFT_0674 0.78 +0.1
676,943 + B158DRAFT_0674 0.78 -0.0
676,950 - B158DRAFT_0674 0.78 -0.3
676,951 - B158DRAFT_0674 0.79 -0.3
676,951 - B158DRAFT_0674 0.79 -0.7
677,067 + B158DRAFT_0674 0.87 -0.2
677,078 - B158DRAFT_0674 0.88 -0.2
677,078 - B158DRAFT_0674 0.88 -0.5
677,143 + +0.2
677,151 - -0.5
677,175 - -0.6
677,179 + +0.4
677,179 + -0.7
677,187 - -0.5
677,227 - +0.1
677,352 + +0.2
677,352 + +0.3
677,398 - B158DRAFT_0675 0.12 -0.6
677,407 + B158DRAFT_0675 0.13 -0.7
677,415 - B158DRAFT_0675 0.14 -0.3
677,522 + B158DRAFT_0675 0.24 -0.2
677,522 + B158DRAFT_0675 0.24 -0.1
677,530 - B158DRAFT_0675 0.25 -0.8
677,662 - B158DRAFT_0675 0.38 +0.4
677,705 + B158DRAFT_0675 0.42 -0.2
677,705 + B158DRAFT_0675 0.42 +0.2
677,715 + B158DRAFT_0675 0.43 -0.8
677,725 - B158DRAFT_0675 0.44 +0.1
677,746 - B158DRAFT_0675 0.46 +1.3
677,780 + B158DRAFT_0675 0.50 -1.1
677,787 + B158DRAFT_0675 0.50 +0.3
677,795 - B158DRAFT_0675 0.51 -0.0
677,795 - B158DRAFT_0675 0.51 -0.0
677,827 + B158DRAFT_0675 0.54 -0.0
677,855 - B158DRAFT_0675 0.57 -1.3
678,005 + B158DRAFT_0675 0.71 -0.4
678,065 + B158DRAFT_0675 0.77 +0.3
678,073 - B158DRAFT_0675 0.78 -0.5
678,096 + B158DRAFT_0675 0.80 +0.0
678,096 + B158DRAFT_0675 0.80 +0.0
678,096 + B158DRAFT_0675 0.80 -0.2
678,126 + B158DRAFT_0675 0.83 +0.1
678,144 - B158DRAFT_0675 0.85 +0.9
678,144 - B158DRAFT_0675 0.85 -0.1
678,167 + B158DRAFT_0675 0.87 -0.8
678,167 - B158DRAFT_0675 0.87 -0.2
678,175 - B158DRAFT_0675 0.88 +0.3
678,218 + +0.1
678,221 - +0.5

Or see this region's nucleotide sequence