Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0135

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0133 and B158DRAFT_0134 are separated by 70 nucleotidesB158DRAFT_0134 and B158DRAFT_0135 are separated by 35 nucleotidesB158DRAFT_0135 and B158DRAFT_0136 are separated by 27 nucleotides B158DRAFT_0133: B158DRAFT_0133 - Uncharacterized iron-regulated protein, at 131,254 to 131,937 _0133 B158DRAFT_0134: B158DRAFT_0134 - Heme/copper-type cytochrome/quinol oxidase, subunit 3, at 132,008 to 132,880 _0134 B158DRAFT_0135: B158DRAFT_0135 - Cytochrome oxidase assembly factor, at 132,916 to 133,485 _0135 B158DRAFT_0136: B158DRAFT_0136 - cytochrome c oxidase, subunit I, at 133,513 to 135,072 _0136 Position (kb) 132 133 134Strain fitness (log2 ratio) -3 -2 -1 0 1at 131.940 kb on - strandat 131.940 kb on - strandat 132.014 kb on - strandat 132.034 kb on + strandat 132.039 kb on + strandat 132.139 kb on - strand, within B158DRAFT_0134at 132.276 kb on + strand, within B158DRAFT_0134at 132.284 kb on - strand, within B158DRAFT_0134at 132.319 kb on + strand, within B158DRAFT_0134at 132.327 kb on - strand, within B158DRAFT_0134at 132.419 kb on - strand, within B158DRAFT_0134at 132.481 kb on - strand, within B158DRAFT_0134at 132.644 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.656 kb on + strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.664 kb on - strand, within B158DRAFT_0134at 132.758 kb on + strand, within B158DRAFT_0134at 132.766 kb on - strand, within B158DRAFT_0134at 132.767 kb on + strand, within B158DRAFT_0134at 132.767 kb on + strand, within B158DRAFT_0134at 132.886 kb on - strandat 132.890 kb on + strandat 132.898 kb on - strandat 132.908 kb on - strandat 132.908 kb on - strandat 132.908 kb on - strandat 132.908 kb on - strandat 132.913 kb on + strandat 132.965 kb on + strandat 132.965 kb on + strandat 132.965 kb on + strandat 132.965 kb on + strandat 132.973 kb on - strand, within B158DRAFT_0135at 132.973 kb on - strand, within B158DRAFT_0135at 132.973 kb on - strand, within B158DRAFT_0135at 133.011 kb on - strand, within B158DRAFT_0135at 133.011 kb on - strand, within B158DRAFT_0135at 133.073 kb on - strand, within B158DRAFT_0135at 133.147 kb on + strand, within B158DRAFT_0135at 133.155 kb on - strand, within B158DRAFT_0135at 133.199 kb on + strand, within B158DRAFT_0135at 133.205 kb on + strand, within B158DRAFT_0135at 133.206 kb on + strand, within B158DRAFT_0135at 133.207 kb on - strand, within B158DRAFT_0135at 133.317 kb on + strand, within B158DRAFT_0135at 133.317 kb on + strand, within B158DRAFT_0135at 133.325 kb on - strand, within B158DRAFT_0135at 133.410 kb on + strand, within B158DRAFT_0135at 133.440 kb on - strandat 133.483 kb on - strandat 133.506 kb on + strandat 133.575 kb on + strandat 133.583 kb on - strandat 133.584 kb on + strandat 133.640 kb on + strandat 133.669 kb on - strand, within B158DRAFT_0136at 133.669 kb on - strand, within B158DRAFT_0136at 133.680 kb on - strand, within B158DRAFT_0136at 133.692 kb on + strand, within B158DRAFT_0136at 133.700 kb on - strand, within B158DRAFT_0136at 133.762 kb on + strand, within B158DRAFT_0136at 133.913 kb on + strand, within B158DRAFT_0136at 133.918 kb on + strand, within B158DRAFT_0136at 133.921 kb on - strand, within B158DRAFT_0136at 133.926 kb on - strand, within B158DRAFT_0136at 134.001 kb on - strand, within B158DRAFT_0136at 134.106 kb on - strand, within B158DRAFT_0136at 134.131 kb on + strand, within B158DRAFT_0136at 134.170 kb on - strand, within B158DRAFT_0136at 134.441 kb on - strand, within B158DRAFT_0136

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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131,940 - +0.2
131,940 - -0.5
132,014 - -0.6
132,034 + -0.6
132,039 + -0.5
132,139 - B158DRAFT_0134 0.15 -1.4
132,276 + B158DRAFT_0134 0.31 -0.7
132,284 - B158DRAFT_0134 0.32 -0.5
132,319 + B158DRAFT_0134 0.36 -0.3
132,327 - B158DRAFT_0134 0.37 -1.8
132,419 - B158DRAFT_0134 0.47 -1.8
132,481 - B158DRAFT_0134 0.54 -0.2
132,644 + B158DRAFT_0134 0.73 -1.4
132,656 + B158DRAFT_0134 0.74 -1.3
132,656 + B158DRAFT_0134 0.74 -1.4
132,656 + B158DRAFT_0134 0.74 -0.5
132,656 + B158DRAFT_0134 0.74 -1.0
132,656 + B158DRAFT_0134 0.74 -2.3
132,656 + B158DRAFT_0134 0.74 -0.3
132,656 + B158DRAFT_0134 0.74 -2.2
132,656 + B158DRAFT_0134 0.74 -1.5
132,656 + B158DRAFT_0134 0.74 -0.9
132,656 + B158DRAFT_0134 0.74 -0.5
132,664 - B158DRAFT_0134 0.75 -0.9
132,664 - B158DRAFT_0134 0.75 -1.1
132,664 - B158DRAFT_0134 0.75 -1.6
132,664 - B158DRAFT_0134 0.75 -1.1
132,664 - B158DRAFT_0134 0.75 -0.7
132,664 - B158DRAFT_0134 0.75 -0.9
132,664 - B158DRAFT_0134 0.75 -1.0
132,758 + B158DRAFT_0134 0.86 -3.3
132,766 - B158DRAFT_0134 0.87 +0.4
132,767 + B158DRAFT_0134 0.87 -0.4
132,767 + B158DRAFT_0134 0.87 -0.9
132,886 - -0.6
132,890 + -1.4
132,898 - -1.2
132,908 - -1.5
132,908 - -1.3
132,908 - -0.2
132,908 - -1.2
132,913 + -0.5
132,965 + +0.0
132,965 + -0.5
132,965 + -1.5
132,965 + -1.4
132,973 - B158DRAFT_0135 0.10 -1.4
132,973 - B158DRAFT_0135 0.10 -1.8
132,973 - B158DRAFT_0135 0.10 -0.0
133,011 - B158DRAFT_0135 0.17 -0.9
133,011 - B158DRAFT_0135 0.17 -1.4
133,073 - B158DRAFT_0135 0.28 -0.8
133,147 + B158DRAFT_0135 0.41 -0.0
133,155 - B158DRAFT_0135 0.42 -0.3
133,199 + B158DRAFT_0135 0.50 -0.4
133,205 + B158DRAFT_0135 0.51 -0.5
133,206 + B158DRAFT_0135 0.51 -1.7
133,207 - B158DRAFT_0135 0.51 -2.2
133,317 + B158DRAFT_0135 0.70 -0.2
133,317 + B158DRAFT_0135 0.70 -3.5
133,325 - B158DRAFT_0135 0.72 -2.0
133,410 + B158DRAFT_0135 0.87 -0.2
133,440 - +0.2
133,483 - -0.1
133,506 + -0.8
133,575 + -0.7
133,583 - -1.2
133,584 + -1.2
133,640 + -1.4
133,669 - B158DRAFT_0136 0.10 -1.2
133,669 - B158DRAFT_0136 0.10 -1.0
133,680 - B158DRAFT_0136 0.11 -1.1
133,692 + B158DRAFT_0136 0.11 -0.6
133,700 - B158DRAFT_0136 0.12 -1.4
133,762 + B158DRAFT_0136 0.16 -1.4
133,913 + B158DRAFT_0136 0.26 -1.6
133,918 + B158DRAFT_0136 0.26 -1.7
133,921 - B158DRAFT_0136 0.26 -0.5
133,926 - B158DRAFT_0136 0.26 -0.3
134,001 - B158DRAFT_0136 0.31 -1.2
134,106 - B158DRAFT_0136 0.38 -1.4
134,131 + B158DRAFT_0136 0.40 -2.8
134,170 - B158DRAFT_0136 0.42 -1.2
134,441 - B158DRAFT_0136 0.59 -0.8

Or see this region's nucleotide sequence