Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0123

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0122 and B158DRAFT_0123 are separated by 14 nucleotidesB158DRAFT_0123 and B158DRAFT_0124 are separated by 2 nucleotides B158DRAFT_0122: B158DRAFT_0122 - NADH-quinone oxidoreductase, F subunit, at 119,992 to 121,287 _0122 B158DRAFT_0123: B158DRAFT_0123 - NADH dehydrogenase subunit E (EC 1.6.5.3), at 121,302 to 121,796 _0123 B158DRAFT_0124: B158DRAFT_0124 - NADH dehydrogenase subunit D (EC 1.6.5.3), at 121,799 to 123,052 _0124 Position (kb) 121 122Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 120.349 kb on - strand, within B158DRAFT_0122at 120.354 kb on - strand, within B158DRAFT_0122at 120.377 kb on + strand, within B158DRAFT_0122at 120.418 kb on + strand, within B158DRAFT_0122at 120.425 kb on + strand, within B158DRAFT_0122at 120.426 kb on - strand, within B158DRAFT_0122at 120.431 kb on - strand, within B158DRAFT_0122at 120.435 kb on - strand, within B158DRAFT_0122at 120.449 kb on + strand, within B158DRAFT_0122at 120.457 kb on - strand, within B158DRAFT_0122at 120.457 kb on - strand, within B158DRAFT_0122at 120.457 kb on - strand, within B158DRAFT_0122at 120.457 kb on - strand, within B158DRAFT_0122at 120.484 kb on - strand, within B158DRAFT_0122at 120.506 kb on + strand, within B158DRAFT_0122at 120.506 kb on + strand, within B158DRAFT_0122at 120.514 kb on - strand, within B158DRAFT_0122at 120.514 kb on - strand, within B158DRAFT_0122at 120.514 kb on - strand, within B158DRAFT_0122at 120.645 kb on - strand, within B158DRAFT_0122at 120.697 kb on - strand, within B158DRAFT_0122at 120.737 kb on + strand, within B158DRAFT_0122at 120.819 kb on + strand, within B158DRAFT_0122at 120.826 kb on + strand, within B158DRAFT_0122at 120.826 kb on - strand, within B158DRAFT_0122at 120.891 kb on + strand, within B158DRAFT_0122at 120.933 kb on + strand, within B158DRAFT_0122at 120.976 kb on - strand, within B158DRAFT_0122at 120.980 kb on - strand, within B158DRAFT_0122at 121.011 kb on + strand, within B158DRAFT_0122at 121.011 kb on + strand, within B158DRAFT_0122at 121.011 kb on + strand, within B158DRAFT_0122at 121.019 kb on - strand, within B158DRAFT_0122at 121.067 kb on + strand, within B158DRAFT_0122at 121.080 kb on + strand, within B158DRAFT_0122at 121.101 kb on - strand, within B158DRAFT_0122at 121.119 kb on + strand, within B158DRAFT_0122at 121.129 kb on + strand, within B158DRAFT_0122at 121.129 kb on + strand, within B158DRAFT_0122at 121.208 kb on - strandat 121.228 kb on + strandat 121.238 kb on + strandat 121.238 kb on + strandat 121.299 kb on + strandat 121.299 kb on + strandat 121.307 kb on - strandat 121.307 kb on - strandat 121.308 kb on - strandat 121.423 kb on - strand, within B158DRAFT_0123at 121.436 kb on + strand, within B158DRAFT_0123at 121.444 kb on - strand, within B158DRAFT_0123at 121.451 kb on - strand, within B158DRAFT_0123at 121.462 kb on - strand, within B158DRAFT_0123at 121.462 kb on - strand, within B158DRAFT_0123at 121.659 kb on + strand, within B158DRAFT_0123at 121.659 kb on + strand, within B158DRAFT_0123at 121.680 kb on + strand, within B158DRAFT_0123at 121.717 kb on + strand, within B158DRAFT_0123at 121.717 kb on + strand, within B158DRAFT_0123at 121.717 kb on + strand, within B158DRAFT_0123at 121.828 kb on + strandat 121.829 kb on - strandat 121.914 kb on + strandat 121.958 kb on - strand, within B158DRAFT_0124at 121.998 kb on + strand, within B158DRAFT_0124at 122.014 kb on + strand, within B158DRAFT_0124at 122.030 kb on - strand, within B158DRAFT_0124at 122.030 kb on - strand, within B158DRAFT_0124at 122.030 kb on - strand, within B158DRAFT_0124at 122.030 kb on - strand, within B158DRAFT_0124at 122.131 kb on - strand, within B158DRAFT_0124at 122.142 kb on - strand, within B158DRAFT_0124at 122.155 kb on - strand, within B158DRAFT_0124at 122.155 kb on - strand, within B158DRAFT_0124at 122.155 kb on - strand, within B158DRAFT_0124at 122.261 kb on + strand, within B158DRAFT_0124at 122.269 kb on - strand, within B158DRAFT_0124at 122.290 kb on - strand, within B158DRAFT_0124at 122.293 kb on + strand, within B158DRAFT_0124at 122.301 kb on - strand, within B158DRAFT_0124at 122.302 kb on - strand, within B158DRAFT_0124at 122.302 kb on - strand, within B158DRAFT_0124at 122.305 kb on + strand, within B158DRAFT_0124at 122.305 kb on + strand, within B158DRAFT_0124at 122.313 kb on - strand, within B158DRAFT_0124at 122.313 kb on - strand, within B158DRAFT_0124at 122.315 kb on + strand, within B158DRAFT_0124at 122.320 kb on + strand, within B158DRAFT_0124at 122.320 kb on + strand, within B158DRAFT_0124at 122.320 kb on + strand, within B158DRAFT_0124at 122.328 kb on - strand, within B158DRAFT_0124at 122.352 kb on + strand, within B158DRAFT_0124at 122.353 kb on + strand, within B158DRAFT_0124at 122.353 kb on + strand, within B158DRAFT_0124at 122.353 kb on + strand, within B158DRAFT_0124at 122.353 kb on + strand, within B158DRAFT_0124at 122.358 kb on + strand, within B158DRAFT_0124at 122.358 kb on + strand, within B158DRAFT_0124at 122.361 kb on - strand, within B158DRAFT_0124at 122.361 kb on - strand, within B158DRAFT_0124at 122.361 kb on - strand, within B158DRAFT_0124at 122.361 kb on - strand, within B158DRAFT_0124at 122.361 kb on - strand, within B158DRAFT_0124at 122.361 kb on - strand, within B158DRAFT_0124at 122.361 kb on - strand, within B158DRAFT_0124at 122.361 kb on - strand, within B158DRAFT_0124at 122.372 kb on + strand, within B158DRAFT_0124at 122.428 kb on + strand, within B158DRAFT_0124at 122.455 kb on - strand, within B158DRAFT_0124at 122.481 kb on + strand, within B158DRAFT_0124at 122.496 kb on + strand, within B158DRAFT_0124at 122.496 kb on + strand, within B158DRAFT_0124at 122.504 kb on - strand, within B158DRAFT_0124at 122.504 kb on - strand, within B158DRAFT_0124at 122.504 kb on - strand, within B158DRAFT_0124at 122.514 kb on - strand, within B158DRAFT_0124at 122.538 kb on + strand, within B158DRAFT_0124at 122.538 kb on + strand, within B158DRAFT_0124at 122.546 kb on - strand, within B158DRAFT_0124at 122.656 kb on + strand, within B158DRAFT_0124at 122.709 kb on - strand, within B158DRAFT_0124at 122.773 kb on - strand, within B158DRAFT_0124at 122.783 kb on - strand, within B158DRAFT_0124at 122.784 kb on + strand, within B158DRAFT_0124at 122.793 kb on + strand, within B158DRAFT_0124at 122.793 kb on - strand, within B158DRAFT_0124at 122.793 kb on - strand, within B158DRAFT_0124at 122.793 kb on - strand, within B158DRAFT_0124

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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120,349 - B158DRAFT_0122 0.28 +0.2
120,354 - B158DRAFT_0122 0.28 +0.9
120,377 + B158DRAFT_0122 0.30 -2.6
120,418 + B158DRAFT_0122 0.33 -3.1
120,425 + B158DRAFT_0122 0.33 -2.4
120,426 - B158DRAFT_0122 0.33 +0.3
120,431 - B158DRAFT_0122 0.34 +0.1
120,435 - B158DRAFT_0122 0.34 +0.2
120,449 + B158DRAFT_0122 0.35 -4.4
120,457 - B158DRAFT_0122 0.36 +0.0
120,457 - B158DRAFT_0122 0.36 +0.6
120,457 - B158DRAFT_0122 0.36 +0.3
120,457 - B158DRAFT_0122 0.36 +0.4
120,484 - B158DRAFT_0122 0.38 +0.8
120,506 + B158DRAFT_0122 0.40 -0.8
120,506 + B158DRAFT_0122 0.40 -3.1
120,514 - B158DRAFT_0122 0.40 +0.6
120,514 - B158DRAFT_0122 0.40 +0.3
120,514 - B158DRAFT_0122 0.40 +0.8
120,645 - B158DRAFT_0122 0.50 +0.2
120,697 - B158DRAFT_0122 0.54 +0.0
120,737 + B158DRAFT_0122 0.57 -3.0
120,819 + B158DRAFT_0122 0.64 -3.0
120,826 + B158DRAFT_0122 0.64 -2.8
120,826 - B158DRAFT_0122 0.64 +0.5
120,891 + B158DRAFT_0122 0.69 -2.8
120,933 + B158DRAFT_0122 0.73 -3.2
120,976 - B158DRAFT_0122 0.76 +0.8
120,980 - B158DRAFT_0122 0.76 +0.3
121,011 + B158DRAFT_0122 0.79 -1.5
121,011 + B158DRAFT_0122 0.79 -1.0
121,011 + B158DRAFT_0122 0.79 -1.0
121,019 - B158DRAFT_0122 0.79 +0.3
121,067 + B158DRAFT_0122 0.83 -2.1
121,080 + B158DRAFT_0122 0.84 -3.1
121,101 - B158DRAFT_0122 0.86 +0.4
121,119 + B158DRAFT_0122 0.87 -4.1
121,129 + B158DRAFT_0122 0.88 -2.6
121,129 + B158DRAFT_0122 0.88 -3.2
121,208 - +0.0
121,228 + -3.2
121,238 + -1.3
121,238 + -1.3
121,299 + -2.1
121,299 + -2.9
121,307 - -0.5
121,307 - -0.2
121,308 - +0.4
121,423 - B158DRAFT_0123 0.24 -0.5
121,436 + B158DRAFT_0123 0.27 -2.1
121,444 - B158DRAFT_0123 0.29 +0.7
121,451 - B158DRAFT_0123 0.30 -0.2
121,462 - B158DRAFT_0123 0.32 +0.5
121,462 - B158DRAFT_0123 0.32 +0.4
121,659 + B158DRAFT_0123 0.72 -2.7
121,659 + B158DRAFT_0123 0.72 -1.9
121,680 + B158DRAFT_0123 0.76 -2.9
121,717 + B158DRAFT_0123 0.84 -2.2
121,717 + B158DRAFT_0123 0.84 -1.9
121,717 + B158DRAFT_0123 0.84 -2.1
121,828 + -3.3
121,829 - -2.5
121,914 + -1.6
121,958 - B158DRAFT_0124 0.13 -3.3
121,998 + B158DRAFT_0124 0.16 -3.3
122,014 + B158DRAFT_0124 0.17 -2.6
122,030 - B158DRAFT_0124 0.18 -3.9
122,030 - B158DRAFT_0124 0.18 -3.0
122,030 - B158DRAFT_0124 0.18 -3.9
122,030 - B158DRAFT_0124 0.18 -2.6
122,131 - B158DRAFT_0124 0.26 -1.6
122,142 - B158DRAFT_0124 0.27 -2.9
122,155 - B158DRAFT_0124 0.28 -2.6
122,155 - B158DRAFT_0124 0.28 -3.3
122,155 - B158DRAFT_0124 0.28 -3.6
122,261 + B158DRAFT_0124 0.37 -3.6
122,269 - B158DRAFT_0124 0.37 -2.7
122,290 - B158DRAFT_0124 0.39 -2.6
122,293 + B158DRAFT_0124 0.39 -3.4
122,301 - B158DRAFT_0124 0.40 -3.4
122,302 - B158DRAFT_0124 0.40 -3.4
122,302 - B158DRAFT_0124 0.40 -0.2
122,305 + B158DRAFT_0124 0.40 -2.8
122,305 + B158DRAFT_0124 0.40 -3.1
122,313 - B158DRAFT_0124 0.41 -2.2
122,313 - B158DRAFT_0124 0.41 -4.1
122,315 + B158DRAFT_0124 0.41 -3.9
122,320 + B158DRAFT_0124 0.42 -3.1
122,320 + B158DRAFT_0124 0.42 -2.2
122,320 + B158DRAFT_0124 0.42 -5.1
122,328 - B158DRAFT_0124 0.42 -3.8
122,352 + B158DRAFT_0124 0.44 -3.1
122,353 + B158DRAFT_0124 0.44 -2.6
122,353 + B158DRAFT_0124 0.44 -3.8
122,353 + B158DRAFT_0124 0.44 -2.3
122,353 + B158DRAFT_0124 0.44 -3.2
122,358 + B158DRAFT_0124 0.45 -2.9
122,358 + B158DRAFT_0124 0.45 -3.5
122,361 - B158DRAFT_0124 0.45 -2.2
122,361 - B158DRAFT_0124 0.45 -4.3
122,361 - B158DRAFT_0124 0.45 -3.5
122,361 - B158DRAFT_0124 0.45 -4.3
122,361 - B158DRAFT_0124 0.45 -3.5
122,361 - B158DRAFT_0124 0.45 -3.6
122,361 - B158DRAFT_0124 0.45 -3.0
122,361 - B158DRAFT_0124 0.45 -3.0
122,372 + B158DRAFT_0124 0.46 -2.7
122,428 + B158DRAFT_0124 0.50 -2.8
122,455 - B158DRAFT_0124 0.52 -4.6
122,481 + B158DRAFT_0124 0.54 -1.0
122,496 + B158DRAFT_0124 0.56 -3.1
122,496 + B158DRAFT_0124 0.56 -3.6
122,504 - B158DRAFT_0124 0.56 -3.0
122,504 - B158DRAFT_0124 0.56 -3.2
122,504 - B158DRAFT_0124 0.56 -3.0
122,514 - B158DRAFT_0124 0.57 -1.6
122,538 + B158DRAFT_0124 0.59 -3.1
122,538 + B158DRAFT_0124 0.59 -3.4
122,546 - B158DRAFT_0124 0.60 -3.2
122,656 + B158DRAFT_0124 0.68 -3.0
122,709 - B158DRAFT_0124 0.73 -2.8
122,773 - B158DRAFT_0124 0.78 -3.2
122,783 - B158DRAFT_0124 0.78 -2.3
122,784 + B158DRAFT_0124 0.79 -0.6
122,793 + B158DRAFT_0124 0.79 -3.6
122,793 - B158DRAFT_0124 0.79 -4.1
122,793 - B158DRAFT_0124 0.79 -5.3
122,793 - B158DRAFT_0124 0.79 -4.0

Or see this region's nucleotide sequence