Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0052

Experiment: m.b. D-Cycloserine 0.03125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0050 and B158DRAFT_0051 are separated by 47 nucleotidesB158DRAFT_0051 and B158DRAFT_0052 are separated by 42 nucleotidesB158DRAFT_0052 and B158DRAFT_0053 are separated by 102 nucleotidesB158DRAFT_0053 and B158DRAFT_0054 are separated by 229 nucleotides B158DRAFT_0050: B158DRAFT_0050 - hypothetical protein, at 47,775 to 48,371 _0050 B158DRAFT_0051: B158DRAFT_0051 - hypothetical protein, at 48,419 to 48,952 _0051 B158DRAFT_0052: B158DRAFT_0052 - hypothetical protein, at 48,995 to 49,813 _0052 B158DRAFT_0053: B158DRAFT_0053 - Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases, at 49,916 to 50,233 _0053 B158DRAFT_0054: B158DRAFT_0054 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 50,463 to 53,075 _0054 Position (kb) 48 49 50Strain fitness (log2 ratio) -2 -1 0 1at 48.082 kb on + strand, within B158DRAFT_0050at 48.082 kb on + strand, within B158DRAFT_0050at 48.090 kb on - strand, within B158DRAFT_0050at 48.090 kb on - strand, within B158DRAFT_0050at 48.203 kb on + strand, within B158DRAFT_0050at 48.203 kb on + strand, within B158DRAFT_0050at 48.203 kb on + strand, within B158DRAFT_0050at 48.203 kb on + strand, within B158DRAFT_0050at 48.203 kb on + strand, within B158DRAFT_0050at 48.205 kb on + strand, within B158DRAFT_0050at 48.211 kb on - strand, within B158DRAFT_0050at 48.211 kb on - strand, within B158DRAFT_0050at 48.211 kb on - strand, within B158DRAFT_0050at 48.223 kb on - strand, within B158DRAFT_0050at 48.254 kb on + strand, within B158DRAFT_0050at 48.299 kb on - strand, within B158DRAFT_0050at 48.302 kb on + strand, within B158DRAFT_0050at 48.302 kb on + strand, within B158DRAFT_0050at 48.315 kb on + strandat 48.315 kb on + strandat 48.315 kb on + strandat 48.316 kb on + strandat 48.323 kb on - strandat 48.344 kb on + strandat 48.344 kb on + strandat 48.493 kb on + strand, within B158DRAFT_0051at 48.595 kb on + strand, within B158DRAFT_0051at 48.603 kb on - strand, within B158DRAFT_0051at 48.603 kb on - strand, within B158DRAFT_0051at 48.603 kb on - strand, within B158DRAFT_0051at 48.608 kb on - strand, within B158DRAFT_0051at 48.682 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.785 kb on + strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.793 kb on - strand, within B158DRAFT_0051at 48.829 kb on + strand, within B158DRAFT_0051at 48.862 kb on - strand, within B158DRAFT_0051at 48.931 kb on + strandat 48.931 kb on + strandat 49.057 kb on + strandat 49.065 kb on - strandat 49.070 kb on - strandat 49.082 kb on + strand, within B158DRAFT_0052at 49.082 kb on + strand, within B158DRAFT_0052at 49.088 kb on - strand, within B158DRAFT_0052at 49.090 kb on + strand, within B158DRAFT_0052at 49.090 kb on - strand, within B158DRAFT_0052at 49.090 kb on - strand, within B158DRAFT_0052at 49.090 kb on - strand, within B158DRAFT_0052at 49.090 kb on - strand, within B158DRAFT_0052at 49.090 kb on - strand, within B158DRAFT_0052at 49.289 kb on + strand, within B158DRAFT_0052at 49.289 kb on + strand, within B158DRAFT_0052at 49.289 kb on + strand, within B158DRAFT_0052at 49.294 kb on + strand, within B158DRAFT_0052at 49.302 kb on - strand, within B158DRAFT_0052at 49.308 kb on + strand, within B158DRAFT_0052at 49.328 kb on + strand, within B158DRAFT_0052at 49.328 kb on + strand, within B158DRAFT_0052at 49.328 kb on + strand, within B158DRAFT_0052at 49.328 kb on + strand, within B158DRAFT_0052at 49.336 kb on - strand, within B158DRAFT_0052at 49.336 kb on - strand, within B158DRAFT_0052at 49.336 kb on - strand, within B158DRAFT_0052at 49.336 kb on - strand, within B158DRAFT_0052at 49.336 kb on - strand, within B158DRAFT_0052at 49.341 kb on + strand, within B158DRAFT_0052at 49.361 kb on + strand, within B158DRAFT_0052at 49.364 kb on - strand, within B158DRAFT_0052at 49.417 kb on - strand, within B158DRAFT_0052at 49.428 kb on - strand, within B158DRAFT_0052at 49.428 kb on - strand, within B158DRAFT_0052at 49.498 kb on + strand, within B158DRAFT_0052at 49.508 kb on - strand, within B158DRAFT_0052at 49.562 kb on + strand, within B158DRAFT_0052at 49.584 kb on + strand, within B158DRAFT_0052at 49.736 kb on - strandat 49.738 kb on + strandat 49.799 kb on + strandat 49.807 kb on - strandat 49.906 kb on - strandat 49.957 kb on + strand, within B158DRAFT_0053at 49.957 kb on + strand, within B158DRAFT_0053at 49.957 kb on + strand, within B158DRAFT_0053at 49.957 kb on + strand, within B158DRAFT_0053at 49.964 kb on + strand, within B158DRAFT_0053at 49.965 kb on - strand, within B158DRAFT_0053at 49.965 kb on - strand, within B158DRAFT_0053at 49.965 kb on - strand, within B158DRAFT_0053at 49.965 kb on - strand, within B158DRAFT_0053at 49.972 kb on - strand, within B158DRAFT_0053at 49.979 kb on + strand, within B158DRAFT_0053at 50.054 kb on + strand, within B158DRAFT_0053at 50.077 kb on + strand, within B158DRAFT_0053at 50.077 kb on + strand, within B158DRAFT_0053at 50.077 kb on + strand, within B158DRAFT_0053at 50.077 kb on + strand, within B158DRAFT_0053at 50.077 kb on + strand, within B158DRAFT_0053at 50.085 kb on - strand, within B158DRAFT_0053at 50.085 kb on - strand, within B158DRAFT_0053at 50.085 kb on - strand, within B158DRAFT_0053at 50.099 kb on + strand, within B158DRAFT_0053at 50.117 kb on - strand, within B158DRAFT_0053at 50.117 kb on - strand, within B158DRAFT_0053at 50.243 kb on - strandat 50.269 kb on + strandat 50.277 kb on + strandat 50.278 kb on + strandat 50.286 kb on - strandat 50.401 kb on + strandat 50.409 kb on + strandat 50.417 kb on - strandat 50.504 kb on + strandat 50.517 kb on + strandat 50.592 kb on + strandat 50.600 kb on - strandat 50.646 kb on + strandat 50.653 kb on + strandat 50.656 kb on + strandat 50.656 kb on + strandat 50.664 kb on - strandat 50.723 kb on - strandat 50.759 kb on + strand, within B158DRAFT_0054at 50.800 kb on - strand, within B158DRAFT_0054

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. D-Cycloserine 0.03125 mg/ml
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48,082 + B158DRAFT_0050 0.51 -0.2
48,082 + B158DRAFT_0050 0.51 +0.3
48,090 - B158DRAFT_0050 0.53 +0.8
48,090 - B158DRAFT_0050 0.53 -0.5
48,203 + B158DRAFT_0050 0.72 -0.2
48,203 + B158DRAFT_0050 0.72 +0.1
48,203 + B158DRAFT_0050 0.72 +0.0
48,203 + B158DRAFT_0050 0.72 +0.0
48,203 + B158DRAFT_0050 0.72 +0.0
48,205 + B158DRAFT_0050 0.72 -0.6
48,211 - B158DRAFT_0050 0.73 -0.6
48,211 - B158DRAFT_0050 0.73 -0.2
48,211 - B158DRAFT_0050 0.73 -0.5
48,223 - B158DRAFT_0050 0.75 -1.1
48,254 + B158DRAFT_0050 0.80 -0.4
48,299 - B158DRAFT_0050 0.88 -0.2
48,302 + B158DRAFT_0050 0.88 +0.0
48,302 + B158DRAFT_0050 0.88 -0.6
48,315 + -0.5
48,315 + +0.3
48,315 + -0.2
48,316 + -0.2
48,323 - -0.1
48,344 + -0.3
48,344 + -0.1
48,493 + B158DRAFT_0051 0.14 -0.1
48,595 + B158DRAFT_0051 0.33 -0.0
48,603 - B158DRAFT_0051 0.34 -0.2
48,603 - B158DRAFT_0051 0.34 -0.1
48,603 - B158DRAFT_0051 0.34 -0.7
48,608 - B158DRAFT_0051 0.35 -1.2
48,682 + B158DRAFT_0051 0.49 -0.2
48,785 + B158DRAFT_0051 0.69 -0.7
48,785 + B158DRAFT_0051 0.69 -0.2
48,785 + B158DRAFT_0051 0.69 -0.7
48,785 + B158DRAFT_0051 0.69 -0.8
48,785 + B158DRAFT_0051 0.69 +0.9
48,785 + B158DRAFT_0051 0.69 -0.3
48,785 + B158DRAFT_0051 0.69 -0.0
48,785 + B158DRAFT_0051 0.69 -0.2
48,785 + B158DRAFT_0051 0.69 -0.0
48,785 + B158DRAFT_0051 0.69 -0.1
48,785 + B158DRAFT_0051 0.69 +0.1
48,785 + B158DRAFT_0051 0.69 +1.7
48,785 + B158DRAFT_0051 0.69 +0.6
48,785 + B158DRAFT_0051 0.69 +0.2
48,785 + B158DRAFT_0051 0.69 -0.2
48,785 + B158DRAFT_0051 0.69 +0.3
48,785 + B158DRAFT_0051 0.69 -0.8
48,785 + B158DRAFT_0051 0.69 -0.3
48,785 + B158DRAFT_0051 0.69 -0.9
48,793 - B158DRAFT_0051 0.70 -0.6
48,793 - B158DRAFT_0051 0.70 -0.0
48,793 - B158DRAFT_0051 0.70 -0.9
48,793 - B158DRAFT_0051 0.70 +0.4
48,793 - B158DRAFT_0051 0.70 +0.6
48,793 - B158DRAFT_0051 0.70 +0.1
48,793 - B158DRAFT_0051 0.70 -0.9
48,793 - B158DRAFT_0051 0.70 +0.5
48,793 - B158DRAFT_0051 0.70 -1.3
48,793 - B158DRAFT_0051 0.70 +0.1
48,793 - B158DRAFT_0051 0.70 -0.2
48,793 - B158DRAFT_0051 0.70 +0.3
48,793 - B158DRAFT_0051 0.70 -0.4
48,793 - B158DRAFT_0051 0.70 -0.5
48,793 - B158DRAFT_0051 0.70 +0.1
48,793 - B158DRAFT_0051 0.70 -0.1
48,793 - B158DRAFT_0051 0.70 -0.5
48,793 - B158DRAFT_0051 0.70 -0.7
48,793 - B158DRAFT_0051 0.70 -0.6
48,793 - B158DRAFT_0051 0.70 -1.0
48,829 + B158DRAFT_0051 0.77 -0.3
48,862 - B158DRAFT_0051 0.83 +0.0
48,931 + -0.0
48,931 + +0.3
49,057 + -0.4
49,065 - -0.4
49,070 - -0.8
49,082 + B158DRAFT_0052 0.11 -0.7
49,082 + B158DRAFT_0052 0.11 -0.5
49,088 - B158DRAFT_0052 0.11 -0.6
49,090 + B158DRAFT_0052 0.12 -0.3
49,090 - B158DRAFT_0052 0.12 +0.5
49,090 - B158DRAFT_0052 0.12 +0.3
49,090 - B158DRAFT_0052 0.12 +0.2
49,090 - B158DRAFT_0052 0.12 -0.6
49,090 - B158DRAFT_0052 0.12 -1.9
49,289 + B158DRAFT_0052 0.36 -0.3
49,289 + B158DRAFT_0052 0.36 +0.0
49,289 + B158DRAFT_0052 0.36 -0.9
49,294 + B158DRAFT_0052 0.37 -0.8
49,302 - B158DRAFT_0052 0.37 -0.6
49,308 + B158DRAFT_0052 0.38 -1.8
49,328 + B158DRAFT_0052 0.41 -0.9
49,328 + B158DRAFT_0052 0.41 -0.1
49,328 + B158DRAFT_0052 0.41 -0.9
49,328 + B158DRAFT_0052 0.41 +0.3
49,336 - B158DRAFT_0052 0.42 +1.7
49,336 - B158DRAFT_0052 0.42 -0.3
49,336 - B158DRAFT_0052 0.42 -0.1
49,336 - B158DRAFT_0052 0.42 +0.3
49,336 - B158DRAFT_0052 0.42 -0.3
49,341 + B158DRAFT_0052 0.42 -1.8
49,361 + B158DRAFT_0052 0.45 -0.3
49,364 - B158DRAFT_0052 0.45 +0.3
49,417 - B158DRAFT_0052 0.52 -0.9
49,428 - B158DRAFT_0052 0.53 +0.2
49,428 - B158DRAFT_0052 0.53 +0.3
49,498 + B158DRAFT_0052 0.61 -0.5
49,508 - B158DRAFT_0052 0.63 -0.3
49,562 + B158DRAFT_0052 0.69 -0.2
49,584 + B158DRAFT_0052 0.72 -0.4
49,736 - -0.6
49,738 + +0.1
49,799 + +0.3
49,807 - +0.2
49,906 - -0.1
49,957 + B158DRAFT_0053 0.13 -0.0
49,957 + B158DRAFT_0053 0.13 +0.1
49,957 + B158DRAFT_0053 0.13 -0.7
49,957 + B158DRAFT_0053 0.13 +0.4
49,964 + B158DRAFT_0053 0.15 -0.0
49,965 - B158DRAFT_0053 0.15 +0.2
49,965 - B158DRAFT_0053 0.15 +0.5
49,965 - B158DRAFT_0053 0.15 -0.3
49,965 - B158DRAFT_0053 0.15 +0.0
49,972 - B158DRAFT_0053 0.18 +0.2
49,979 + B158DRAFT_0053 0.20 +0.4
50,054 + B158DRAFT_0053 0.43 +0.2
50,077 + B158DRAFT_0053 0.51 -0.1
50,077 + B158DRAFT_0053 0.51 +0.1
50,077 + B158DRAFT_0053 0.51 -0.7
50,077 + B158DRAFT_0053 0.51 +0.2
50,077 + B158DRAFT_0053 0.51 +0.3
50,085 - B158DRAFT_0053 0.53 +0.3
50,085 - B158DRAFT_0053 0.53 -1.1
50,085 - B158DRAFT_0053 0.53 +0.7
50,099 + B158DRAFT_0053 0.58 -0.0
50,117 - B158DRAFT_0053 0.63 +0.5
50,117 - B158DRAFT_0053 0.63 +0.2
50,243 - +0.7
50,269 + -0.1
50,277 + -0.2
50,278 + -0.3
50,286 - -0.6
50,401 + +0.4
50,409 + +0.2
50,417 - +0.2
50,504 + -0.1
50,517 + +0.3
50,592 + +0.3
50,600 - +0.3
50,646 + +0.6
50,653 + -0.2
50,656 + -0.1
50,656 + -0.1
50,664 - +0.4
50,723 - +0.4
50,759 + B158DRAFT_0054 0.11 +0.5
50,800 - B158DRAFT_0054 0.13 +0.1

Or see this region's nucleotide sequence