Experiment: m.b. A22 0.0109375 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_2080 and B158DRAFT_2081 are separated by 206 nucleotides B158DRAFT_2081 and B158DRAFT_2082 overlap by 4 nucleotides B158DRAFT_2082 and B158DRAFT_2083 overlap by 4 nucleotides
B158DRAFT_2080: B158DRAFT_2080 - RNA polymerase, sigma 54 subunit, RpoN/SigL, at 219,130 to 220,602
_2080
B158DRAFT_2081: B158DRAFT_2081 - ABC-type (unclassified) transport system, ATPase component, at 220,809 to 221,534
_2081
B158DRAFT_2082: B158DRAFT_2082 - Uncharacterized protein conserved in bacteria, at 221,531 to 222,292
_2082
B158DRAFT_2083: B158DRAFT_2083 - Uncharacterized protein conserved in bacteria, at 222,289 to 222,846
_2083
Position (kb) 220
221
222 Strain fitness (log2 ratio) -1
0
1 at 220.195 kb on - strand, within B158DRAFT_2080 at 220.212 kb on - strand, within B158DRAFT_2080 at 220.314 kb on - strand, within B158DRAFT_2080 at 220.317 kb on + strand, within B158DRAFT_2080 at 220.434 kb on + strand, within B158DRAFT_2080 at 220.434 kb on + strand, within B158DRAFT_2080 at 220.434 kb on + strand, within B158DRAFT_2080 at 220.434 kb on + strand, within B158DRAFT_2080 at 220.434 kb on + strand, within B158DRAFT_2080 at 220.442 kb on - strand, within B158DRAFT_2080 at 220.442 kb on - strand, within B158DRAFT_2080 at 220.510 kb on - strand at 220.542 kb on + strand at 220.661 kb on + strand at 220.765 kb on + strand at 220.773 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.0109375 mg/ml remove 220,195 - B158DRAFT_2080 0.72 -0.3 220,212 - B158DRAFT_2080 0.73 -0.1 220,314 - B158DRAFT_2080 0.80 +0.2 220,317 + B158DRAFT_2080 0.81 -0.1 220,434 + B158DRAFT_2080 0.89 -0.1 220,434 + B158DRAFT_2080 0.89 -0.1 220,434 + B158DRAFT_2080 0.89 -0.2 220,434 + B158DRAFT_2080 0.89 +0.4 220,434 + B158DRAFT_2080 0.89 -0.6 220,442 - B158DRAFT_2080 0.89 +0.4 220,442 - B158DRAFT_2080 0.89 -0.7 220,510 - +0.1 220,542 + +0.1 220,661 + -0.8 220,765 + +0.0 220,773 - -1.6
Or see this region's nucleotide sequence