Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1477

Experiment: m.b. A22 0.0109375 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_1475 and B158DRAFT_1476 overlap by 4 nucleotidesB158DRAFT_1476 and B158DRAFT_1477 overlap by 1 nucleotidesB158DRAFT_1477 and B158DRAFT_1478 are separated by 419 nucleotidesB158DRAFT_1478 and B158DRAFT_1479 are separated by 122 nucleotides B158DRAFT_1475: B158DRAFT_1475 - Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes, at 1,526,699 to 1,528,417 _1475 B158DRAFT_1476: B158DRAFT_1476 - Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit, at 1,528,414 to 1,529,394 _1476 B158DRAFT_1477: B158DRAFT_1477 - pyruvate dehydrogenase E1 component, alpha subunit, at 1,529,394 to 1,530,485 _1477 B158DRAFT_1478: B158DRAFT_1478 - hypothetical protein, at 1,530,905 to 1,531,288 _1478 B158DRAFT_1479: B158DRAFT_1479 - aminopeptidase N, Escherichia coli type, at 1,531,411 to 1,534,077 _1479 Position (kb) 1529 1530 1531Strain fitness (log2 ratio) -2 -1 0 1at 1529.421 kb on - strandat 1530.172 kb on + strand, within B158DRAFT_1477at 1530.503 kb on - strandat 1530.503 kb on - strandat 1530.503 kb on - strandat 1530.503 kb on - strandat 1530.503 kb on - strandat 1530.503 kb on - strandat 1530.503 kb on - strandat 1530.503 kb on - strandat 1530.503 kb on - strandat 1530.503 kb on - strandat 1530.534 kb on - strandat 1530.704 kb on - strandat 1530.704 kb on - strandat 1530.777 kb on + strandat 1530.785 kb on - strandat 1530.958 kb on + strand, within B158DRAFT_1478at 1530.966 kb on - strand, within B158DRAFT_1478at 1530.968 kb on + strand, within B158DRAFT_1478at 1530.968 kb on + strand, within B158DRAFT_1478at 1530.982 kb on + strand, within B158DRAFT_1478at 1530.990 kb on - strand, within B158DRAFT_1478at 1531.004 kb on + strand, within B158DRAFT_1478at 1531.004 kb on + strand, within B158DRAFT_1478at 1531.004 kb on + strand, within B158DRAFT_1478at 1531.012 kb on - strand, within B158DRAFT_1478at 1531.012 kb on - strand, within B158DRAFT_1478at 1531.012 kb on - strand, within B158DRAFT_1478at 1531.012 kb on - strand, within B158DRAFT_1478at 1531.012 kb on - strand, within B158DRAFT_1478at 1531.012 kb on - strand, within B158DRAFT_1478at 1531.012 kb on - strand, within B158DRAFT_1478at 1531.012 kb on - strand, within B158DRAFT_1478at 1531.012 kb on - strand, within B158DRAFT_1478at 1531.012 kb on - strand, within B158DRAFT_1478at 1531.012 kb on - strand, within B158DRAFT_1478at 1531.045 kb on + strand, within B158DRAFT_1478at 1531.087 kb on + strand, within B158DRAFT_1478at 1531.108 kb on + strand, within B158DRAFT_1478at 1531.148 kb on + strand, within B158DRAFT_1478at 1531.159 kb on + strand, within B158DRAFT_1478at 1531.159 kb on + strand, within B158DRAFT_1478at 1531.167 kb on - strand, within B158DRAFT_1478at 1531.167 kb on - strand, within B158DRAFT_1478at 1531.167 kb on - strand, within B158DRAFT_1478at 1531.167 kb on - strand, within B158DRAFT_1478at 1531.190 kb on - strand, within B158DRAFT_1478at 1531.190 kb on - strand, within B158DRAFT_1478at 1531.194 kb on + strand, within B158DRAFT_1478at 1531.194 kb on + strand, within B158DRAFT_1478at 1531.194 kb on + strand, within B158DRAFT_1478at 1531.194 kb on + strand, within B158DRAFT_1478at 1531.198 kb on + strand, within B158DRAFT_1478at 1531.202 kb on - strand, within B158DRAFT_1478at 1531.202 kb on - strand, within B158DRAFT_1478at 1531.202 kb on - strand, within B158DRAFT_1478at 1531.202 kb on - strand, within B158DRAFT_1478at 1531.203 kb on + strand, within B158DRAFT_1478at 1531.217 kb on + strand, within B158DRAFT_1478at 1531.217 kb on + strand, within B158DRAFT_1478at 1531.271 kb on + strandat 1531.278 kb on + strandat 1531.286 kb on - strandat 1531.290 kb on + strandat 1531.441 kb on - strandat 1531.450 kb on + strandat 1531.458 kb on - strandat 1531.458 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.0109375 mg/ml
remove
1,529,421 - -0.5
1,530,172 + B158DRAFT_1477 0.71 -1.1
1,530,503 - -0.4
1,530,503 - -1.1
1,530,503 - -0.9
1,530,503 - -1.9
1,530,503 - -1.7
1,530,503 - -0.9
1,530,503 - -2.3
1,530,503 - +0.2
1,530,503 - -1.4
1,530,503 - -0.2
1,530,534 - -0.4
1,530,704 - +0.3
1,530,704 - +0.8
1,530,777 + +0.2
1,530,785 - -1.6
1,530,958 + B158DRAFT_1478 0.14 +0.1
1,530,966 - B158DRAFT_1478 0.16 +0.1
1,530,968 + B158DRAFT_1478 0.16 -0.7
1,530,968 + B158DRAFT_1478 0.16 -0.2
1,530,982 + B158DRAFT_1478 0.20 -0.5
1,530,990 - B158DRAFT_1478 0.22 -0.7
1,531,004 + B158DRAFT_1478 0.26 -0.6
1,531,004 + B158DRAFT_1478 0.26 -0.3
1,531,004 + B158DRAFT_1478 0.26 -0.6
1,531,012 - B158DRAFT_1478 0.28 +0.1
1,531,012 - B158DRAFT_1478 0.28 -0.5
1,531,012 - B158DRAFT_1478 0.28 -0.4
1,531,012 - B158DRAFT_1478 0.28 -0.2
1,531,012 - B158DRAFT_1478 0.28 -0.9
1,531,012 - B158DRAFT_1478 0.28 -0.6
1,531,012 - B158DRAFT_1478 0.28 +0.4
1,531,012 - B158DRAFT_1478 0.28 -0.0
1,531,012 - B158DRAFT_1478 0.28 +0.5
1,531,012 - B158DRAFT_1478 0.28 +0.4
1,531,012 - B158DRAFT_1478 0.28 -0.2
1,531,045 + B158DRAFT_1478 0.36 -0.1
1,531,087 + B158DRAFT_1478 0.47 -0.6
1,531,108 + B158DRAFT_1478 0.53 -0.4
1,531,148 + B158DRAFT_1478 0.63 -0.4
1,531,159 + B158DRAFT_1478 0.66 -1.1
1,531,159 + B158DRAFT_1478 0.66 -0.8
1,531,167 - B158DRAFT_1478 0.68 +0.2
1,531,167 - B158DRAFT_1478 0.68 -1.3
1,531,167 - B158DRAFT_1478 0.68 +0.1
1,531,167 - B158DRAFT_1478 0.68 +0.3
1,531,190 - B158DRAFT_1478 0.74 -0.1
1,531,190 - B158DRAFT_1478 0.74 +0.3
1,531,194 + B158DRAFT_1478 0.75 -1.2
1,531,194 + B158DRAFT_1478 0.75 -0.0
1,531,194 + B158DRAFT_1478 0.75 -0.4
1,531,194 + B158DRAFT_1478 0.75 -0.4
1,531,198 + B158DRAFT_1478 0.76 +0.1
1,531,202 - B158DRAFT_1478 0.77 -0.2
1,531,202 - B158DRAFT_1478 0.77 -0.8
1,531,202 - B158DRAFT_1478 0.77 -1.1
1,531,202 - B158DRAFT_1478 0.77 -0.4
1,531,203 + B158DRAFT_1478 0.78 -0.5
1,531,217 + B158DRAFT_1478 0.81 -0.3
1,531,217 + B158DRAFT_1478 0.81 -0.3
1,531,271 + -0.0
1,531,278 + -0.8
1,531,286 - -1.3
1,531,290 + +0.0
1,531,441 - -0.1
1,531,450 + +0.4
1,531,458 - +0.4
1,531,458 - +0.3

Or see this region's nucleotide sequence