Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0240

Experiment: m.b. A22 0.0109375 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0238 and B158DRAFT_0239 are separated by 56 nucleotidesB158DRAFT_0239 and B158DRAFT_0240 are separated by 48 nucleotidesB158DRAFT_0240 and B158DRAFT_0242 are separated by 398 nucleotides B158DRAFT_0238: B158DRAFT_0238 - Superfamily I DNA and RNA helicases, at 246,439 to 248,619 _0238 B158DRAFT_0239: B158DRAFT_0239 - 2-keto-4-pentenoate hydratase, at 248,676 to 249,440 _0239 B158DRAFT_0240: B158DRAFT_0240 - Lactate dehydrogenase and related dehydrogenases, at 249,489 to 250,442 _0240 B158DRAFT_0242: B158DRAFT_0242 - hypothetical protein, at 250,841 to 251,404 _0242 Position (kb) 249 250 251Strain fitness (log2 ratio) -3 -2 -1 0 1at 248.489 kb on + strandat 248.536 kb on - strandat 248.557 kb on - strandat 248.557 kb on - strandat 248.578 kb on - strandat 248.598 kb on + strandat 248.606 kb on - strandat 248.608 kb on + strandat 248.624 kb on - strandat 248.695 kb on + strandat 248.695 kb on + strandat 248.703 kb on - strandat 248.845 kb on - strand, within B158DRAFT_0239at 248.847 kb on + strand, within B158DRAFT_0239at 248.847 kb on + strand, within B158DRAFT_0239at 248.847 kb on + strand, within B158DRAFT_0239at 248.847 kb on + strand, within B158DRAFT_0239at 248.847 kb on + strand, within B158DRAFT_0239at 248.855 kb on - strand, within B158DRAFT_0239at 248.855 kb on - strand, within B158DRAFT_0239at 248.855 kb on - strand, within B158DRAFT_0239at 248.875 kb on + strand, within B158DRAFT_0239at 248.954 kb on - strand, within B158DRAFT_0239at 248.960 kb on + strand, within B158DRAFT_0239at 249.025 kb on + strand, within B158DRAFT_0239at 249.025 kb on + strand, within B158DRAFT_0239at 249.025 kb on + strand, within B158DRAFT_0239at 249.025 kb on + strand, within B158DRAFT_0239at 249.027 kb on + strand, within B158DRAFT_0239at 249.084 kb on - strand, within B158DRAFT_0239at 249.117 kb on + strand, within B158DRAFT_0239at 249.139 kb on - strand, within B158DRAFT_0239at 249.170 kb on - strand, within B158DRAFT_0239at 249.183 kb on - strand, within B158DRAFT_0239at 249.213 kb on - strand, within B158DRAFT_0239at 249.213 kb on - strand, within B158DRAFT_0239at 249.243 kb on + strand, within B158DRAFT_0239at 249.365 kb on + strandat 249.384 kb on + strandat 249.392 kb on - strandat 249.402 kb on - strandat 249.506 kb on - strandat 249.578 kb on - strandat 249.583 kb on + strandat 249.583 kb on + strandat 249.592 kb on + strand, within B158DRAFT_0240at 249.592 kb on + strand, within B158DRAFT_0240at 249.600 kb on - strand, within B158DRAFT_0240at 249.606 kb on + strand, within B158DRAFT_0240at 249.610 kb on - strand, within B158DRAFT_0240at 249.611 kb on + strand, within B158DRAFT_0240at 249.611 kb on + strand, within B158DRAFT_0240at 249.611 kb on + strand, within B158DRAFT_0240at 249.611 kb on + strand, within B158DRAFT_0240at 249.614 kb on - strand, within B158DRAFT_0240at 249.616 kb on + strand, within B158DRAFT_0240at 249.616 kb on + strand, within B158DRAFT_0240at 249.619 kb on - strand, within B158DRAFT_0240at 249.619 kb on - strand, within B158DRAFT_0240at 249.628 kb on + strand, within B158DRAFT_0240at 249.628 kb on + strand, within B158DRAFT_0240at 249.699 kb on + strand, within B158DRAFT_0240at 249.710 kb on + strand, within B158DRAFT_0240at 249.710 kb on + strand, within B158DRAFT_0240at 249.710 kb on + strand, within B158DRAFT_0240at 249.710 kb on + strand, within B158DRAFT_0240at 249.710 kb on + strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.718 kb on - strand, within B158DRAFT_0240at 249.780 kb on + strand, within B158DRAFT_0240at 249.818 kb on - strand, within B158DRAFT_0240at 249.961 kb on + strand, within B158DRAFT_0240at 249.968 kb on - strand, within B158DRAFT_0240at 249.976 kb on + strand, within B158DRAFT_0240at 250.025 kb on - strand, within B158DRAFT_0240at 250.080 kb on + strand, within B158DRAFT_0240at 250.080 kb on + strand, within B158DRAFT_0240at 250.088 kb on - strand, within B158DRAFT_0240at 250.090 kb on + strand, within B158DRAFT_0240at 250.092 kb on + strand, within B158DRAFT_0240at 250.100 kb on - strand, within B158DRAFT_0240at 250.101 kb on - strand, within B158DRAFT_0240at 250.230 kb on + strand, within B158DRAFT_0240at 250.244 kb on - strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.304 kb on + strand, within B158DRAFT_0240at 250.340 kb on + strand, within B158DRAFT_0240at 250.346 kb on - strand, within B158DRAFT_0240at 250.354 kb on - strandat 250.368 kb on + strandat 250.406 kb on + strandat 250.421 kb on - strandat 250.461 kb on - strandat 250.514 kb on + strandat 250.896 kb on + strandat 250.896 kb on + strandat 250.896 kb on + strandat 250.904 kb on - strand, within B158DRAFT_0242at 250.904 kb on - strand, within B158DRAFT_0242at 250.925 kb on - strand, within B158DRAFT_0242at 250.982 kb on - strand, within B158DRAFT_0242at 251.053 kb on - strand, within B158DRAFT_0242at 251.102 kb on + strand, within B158DRAFT_0242at 251.110 kb on - strand, within B158DRAFT_0242at 251.110 kb on - strand, within B158DRAFT_0242at 251.110 kb on - strand, within B158DRAFT_0242at 251.110 kb on - strand, within B158DRAFT_0242at 251.110 kb on - strand, within B158DRAFT_0242at 251.120 kb on - strand, within B158DRAFT_0242at 251.362 kb on + strandat 251.377 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.0109375 mg/ml
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248,489 + -0.3
248,536 - -0.4
248,557 - -2.2
248,557 - +0.5
248,578 - +0.4
248,598 + -1.3
248,606 - -0.4
248,608 + -0.2
248,624 - -1.5
248,695 + +1.6
248,695 + -0.3
248,703 - -0.2
248,845 - B158DRAFT_0239 0.22 -0.6
248,847 + B158DRAFT_0239 0.22 -0.1
248,847 + B158DRAFT_0239 0.22 -0.2
248,847 + B158DRAFT_0239 0.22 +0.9
248,847 + B158DRAFT_0239 0.22 +0.6
248,847 + B158DRAFT_0239 0.22 -0.6
248,855 - B158DRAFT_0239 0.23 -0.3
248,855 - B158DRAFT_0239 0.23 -0.2
248,855 - B158DRAFT_0239 0.23 -0.3
248,875 + B158DRAFT_0239 0.26 -0.5
248,954 - B158DRAFT_0239 0.36 -0.3
248,960 + B158DRAFT_0239 0.37 +0.5
249,025 + B158DRAFT_0239 0.46 -1.3
249,025 + B158DRAFT_0239 0.46 -0.3
249,025 + B158DRAFT_0239 0.46 -0.3
249,025 + B158DRAFT_0239 0.46 -0.2
249,027 + B158DRAFT_0239 0.46 -0.3
249,084 - B158DRAFT_0239 0.53 +0.1
249,117 + B158DRAFT_0239 0.58 -2.8
249,139 - B158DRAFT_0239 0.61 +0.0
249,170 - B158DRAFT_0239 0.65 +1.2
249,183 - B158DRAFT_0239 0.66 -0.1
249,213 - B158DRAFT_0239 0.70 +0.5
249,213 - B158DRAFT_0239 0.70 -0.8
249,243 + B158DRAFT_0239 0.74 +0.1
249,365 + -0.8
249,384 + -0.6
249,392 - -0.1
249,402 - -0.1
249,506 - -0.5
249,578 - +0.1
249,583 + -0.6
249,583 + -0.2
249,592 + B158DRAFT_0240 0.11 +0.4
249,592 + B158DRAFT_0240 0.11 -1.4
249,600 - B158DRAFT_0240 0.12 +0.1
249,606 + B158DRAFT_0240 0.12 -0.9
249,610 - B158DRAFT_0240 0.13 -0.5
249,611 + B158DRAFT_0240 0.13 -0.8
249,611 + B158DRAFT_0240 0.13 -0.1
249,611 + B158DRAFT_0240 0.13 -0.8
249,611 + B158DRAFT_0240 0.13 +0.8
249,614 - B158DRAFT_0240 0.13 -0.5
249,616 + B158DRAFT_0240 0.13 -0.2
249,616 + B158DRAFT_0240 0.13 +0.0
249,619 - B158DRAFT_0240 0.14 -1.2
249,619 - B158DRAFT_0240 0.14 -0.2
249,628 + B158DRAFT_0240 0.15 -0.2
249,628 + B158DRAFT_0240 0.15 -0.6
249,699 + B158DRAFT_0240 0.22 -0.2
249,710 + B158DRAFT_0240 0.23 +0.0
249,710 + B158DRAFT_0240 0.23 -0.1
249,710 + B158DRAFT_0240 0.23 +0.2
249,710 + B158DRAFT_0240 0.23 -0.3
249,710 + B158DRAFT_0240 0.23 -0.8
249,718 - B158DRAFT_0240 0.24 -0.0
249,718 - B158DRAFT_0240 0.24 -0.2
249,718 - B158DRAFT_0240 0.24 -1.6
249,718 - B158DRAFT_0240 0.24 +0.0
249,718 - B158DRAFT_0240 0.24 -0.3
249,718 - B158DRAFT_0240 0.24 -0.4
249,718 - B158DRAFT_0240 0.24 -0.9
249,780 + B158DRAFT_0240 0.31 -0.3
249,818 - B158DRAFT_0240 0.34 +0.0
249,961 + B158DRAFT_0240 0.49 -0.5
249,968 - B158DRAFT_0240 0.50 -0.1
249,976 + B158DRAFT_0240 0.51 -0.8
250,025 - B158DRAFT_0240 0.56 +0.6
250,080 + B158DRAFT_0240 0.62 -0.7
250,080 + B158DRAFT_0240 0.62 -0.1
250,088 - B158DRAFT_0240 0.63 +0.2
250,090 + B158DRAFT_0240 0.63 +0.3
250,092 + B158DRAFT_0240 0.63 -0.2
250,100 - B158DRAFT_0240 0.64 -0.1
250,101 - B158DRAFT_0240 0.64 +0.2
250,230 + B158DRAFT_0240 0.78 -0.4
250,244 - B158DRAFT_0240 0.79 -0.2
250,304 + B158DRAFT_0240 0.85 -0.2
250,304 + B158DRAFT_0240 0.85 -0.0
250,304 + B158DRAFT_0240 0.85 -0.8
250,304 + B158DRAFT_0240 0.85 +1.1
250,340 + B158DRAFT_0240 0.89 -1.3
250,346 - B158DRAFT_0240 0.90 +0.4
250,354 - -0.3
250,368 + +0.7
250,406 + -0.8
250,421 - -0.4
250,461 - -0.5
250,514 + -0.4
250,896 + -0.2
250,896 + -0.1
250,896 + -0.8
250,904 - B158DRAFT_0242 0.11 +0.4
250,904 - B158DRAFT_0242 0.11 -0.2
250,925 - B158DRAFT_0242 0.15 -0.8
250,982 - B158DRAFT_0242 0.25 -0.1
251,053 - B158DRAFT_0242 0.38 -0.4
251,102 + B158DRAFT_0242 0.46 -0.0
251,110 - B158DRAFT_0242 0.48 -0.1
251,110 - B158DRAFT_0242 0.48 -0.8
251,110 - B158DRAFT_0242 0.48 +0.1
251,110 - B158DRAFT_0242 0.48 +0.1
251,110 - B158DRAFT_0242 0.48 -0.1
251,120 - B158DRAFT_0242 0.49 -0.3
251,362 + +0.1
251,377 - -0.6

Or see this region's nucleotide sequence