Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2230

Experiment: m.b. benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2229 and B158DRAFT_2230 are separated by 98 nucleotidesB158DRAFT_2230 and B158DRAFT_2231 are separated by 133 nucleotidesB158DRAFT_2231 and B158DRAFT_2232 are separated by 272 nucleotides B158DRAFT_2229: B158DRAFT_2229 - 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52), at 381,471 to 383,627 _2229 B158DRAFT_2230: B158DRAFT_2230 - hypothetical protein, at 383,726 to 384,424 _2230 B158DRAFT_2231: B158DRAFT_2231 - Glutaredoxin-like domain (DUF836)., at 384,558 to 384,824 _2231 B158DRAFT_2232: B158DRAFT_2232 - transcriptional regulator, TetR family, at 385,097 to 385,726 _2232 Position (kb) 383 384 385Strain fitness (log2 ratio) -2 -1 0 1at 382.791 kb on - strand, within B158DRAFT_2229at 382.791 kb on - strand, within B158DRAFT_2229at 382.965 kb on - strand, within B158DRAFT_2229at 382.965 kb on - strand, within B158DRAFT_2229at 382.970 kb on + strand, within B158DRAFT_2229at 382.990 kb on + strand, within B158DRAFT_2229at 383.008 kb on - strand, within B158DRAFT_2229at 383.038 kb on + strand, within B158DRAFT_2229at 383.074 kb on + strand, within B158DRAFT_2229at 383.082 kb on - strand, within B158DRAFT_2229at 383.087 kb on - strand, within B158DRAFT_2229at 383.134 kb on - strand, within B158DRAFT_2229at 383.159 kb on - strand, within B158DRAFT_2229at 383.242 kb on + strand, within B158DRAFT_2229at 383.317 kb on + strand, within B158DRAFT_2229at 383.317 kb on + strand, within B158DRAFT_2229at 383.317 kb on + strand, within B158DRAFT_2229at 383.325 kb on - strand, within B158DRAFT_2229at 383.325 kb on - strand, within B158DRAFT_2229at 383.325 kb on - strand, within B158DRAFT_2229at 383.334 kb on + strand, within B158DRAFT_2229at 383.341 kb on + strand, within B158DRAFT_2229at 383.342 kb on - strand, within B158DRAFT_2229at 383.342 kb on - strand, within B158DRAFT_2229at 383.344 kb on + strand, within B158DRAFT_2229at 383.375 kb on - strand, within B158DRAFT_2229at 383.397 kb on + strand, within B158DRAFT_2229at 383.412 kb on - strandat 383.412 kb on - strandat 383.421 kb on + strandat 383.454 kb on + strandat 383.605 kb on + strandat 383.613 kb on - strandat 383.652 kb on + strandat 383.907 kb on + strand, within B158DRAFT_2230at 384.178 kb on - strand, within B158DRAFT_2230at 384.201 kb on + strand, within B158DRAFT_2230at 384.201 kb on + strand, within B158DRAFT_2230at 384.209 kb on - strand, within B158DRAFT_2230at 384.209 kb on - strand, within B158DRAFT_2230at 384.209 kb on - strand, within B158DRAFT_2230at 384.768 kb on + strand, within B158DRAFT_2231at 384.878 kb on - strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.914 kb on + strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.922 kb on - strandat 384.929 kb on - strandat 384.981 kb on + strandat 384.981 kb on + strandat 385.005 kb on - strandat 385.092 kb on - strandat 385.092 kb on - strandat 385.099 kb on + strandat 385.107 kb on - strandat 385.130 kb on - strandat 385.196 kb on + strand, within B158DRAFT_2232at 385.214 kb on - strand, within B158DRAFT_2232at 385.219 kb on - strand, within B158DRAFT_2232at 385.263 kb on - strand, within B158DRAFT_2232at 385.273 kb on - strand, within B158DRAFT_2232at 385.298 kb on + strand, within B158DRAFT_2232at 385.305 kb on + strand, within B158DRAFT_2232at 385.313 kb on - strand, within B158DRAFT_2232at 385.313 kb on - strand, within B158DRAFT_2232at 385.320 kb on + strand, within B158DRAFT_2232at 385.320 kb on + strand, within B158DRAFT_2232at 385.320 kb on + strand, within B158DRAFT_2232at 385.328 kb on - strand, within B158DRAFT_2232at 385.330 kb on + strand, within B158DRAFT_2232at 385.330 kb on + strand, within B158DRAFT_2232at 385.330 kb on + strand, within B158DRAFT_2232at 385.338 kb on - strand, within B158DRAFT_2232at 385.338 kb on - strand, within B158DRAFT_2232at 385.340 kb on + strand, within B158DRAFT_2232at 385.375 kb on + strand, within B158DRAFT_2232at 385.375 kb on + strand, within B158DRAFT_2232at 385.375 kb on + strand, within B158DRAFT_2232at 385.375 kb on + strand, within B158DRAFT_2232at 385.375 kb on + strand, within B158DRAFT_2232at 385.375 kb on + strand, within B158DRAFT_2232at 385.375 kb on + strand, within B158DRAFT_2232at 385.375 kb on + strand, within B158DRAFT_2232at 385.375 kb on + strand, within B158DRAFT_2232at 385.375 kb on + strand, within B158DRAFT_2232at 385.383 kb on - strand, within B158DRAFT_2232at 385.383 kb on - strand, within B158DRAFT_2232at 385.383 kb on - strand, within B158DRAFT_2232at 385.383 kb on - strand, within B158DRAFT_2232at 385.383 kb on - strand, within B158DRAFT_2232at 385.383 kb on - strand, within B158DRAFT_2232at 385.383 kb on - strand, within B158DRAFT_2232at 385.383 kb on - strand, within B158DRAFT_2232at 385.383 kb on - strand, within B158DRAFT_2232at 385.383 kb on - strand, within B158DRAFT_2232

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.2 mg/ml
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382,791 - B158DRAFT_2229 0.61 -1.2
382,791 - B158DRAFT_2229 0.61 -0.1
382,965 - B158DRAFT_2229 0.69 -0.3
382,965 - B158DRAFT_2229 0.69 +0.1
382,970 + B158DRAFT_2229 0.69 -0.5
382,990 + B158DRAFT_2229 0.70 -0.6
383,008 - B158DRAFT_2229 0.71 -0.3
383,038 + B158DRAFT_2229 0.73 -0.0
383,074 + B158DRAFT_2229 0.74 -0.0
383,082 - B158DRAFT_2229 0.75 +0.3
383,087 - B158DRAFT_2229 0.75 -0.2
383,134 - B158DRAFT_2229 0.77 -0.8
383,159 - B158DRAFT_2229 0.78 -0.1
383,242 + B158DRAFT_2229 0.82 -0.5
383,317 + B158DRAFT_2229 0.86 -0.3
383,317 + B158DRAFT_2229 0.86 -0.3
383,317 + B158DRAFT_2229 0.86 -0.5
383,325 - B158DRAFT_2229 0.86 +0.3
383,325 - B158DRAFT_2229 0.86 -1.0
383,325 - B158DRAFT_2229 0.86 +0.7
383,334 + B158DRAFT_2229 0.86 -0.6
383,341 + B158DRAFT_2229 0.87 -0.4
383,342 - B158DRAFT_2229 0.87 +0.3
383,342 - B158DRAFT_2229 0.87 +0.2
383,344 + B158DRAFT_2229 0.87 -0.5
383,375 - B158DRAFT_2229 0.88 -0.1
383,397 + B158DRAFT_2229 0.89 -0.2
383,412 - -0.4
383,412 - +0.4
383,421 + +0.1
383,454 + -0.1
383,605 + +0.1
383,613 - +1.4
383,652 + -0.9
383,907 + B158DRAFT_2230 0.26 -0.3
384,178 - B158DRAFT_2230 0.65 -0.6
384,201 + B158DRAFT_2230 0.68 +0.1
384,201 + B158DRAFT_2230 0.68 -0.1
384,209 - B158DRAFT_2230 0.69 -0.4
384,209 - B158DRAFT_2230 0.69 +0.4
384,209 - B158DRAFT_2230 0.69 -0.4
384,768 + B158DRAFT_2231 0.79 -1.0
384,878 - -0.2
384,914 + -0.3
384,914 + +0.4
384,914 + +0.3
384,914 + +0.3
384,914 + +0.4
384,914 + -1.1
384,914 + -0.6
384,914 + +0.2
384,914 + -2.3
384,914 + -0.2
384,914 + +0.1
384,914 + +0.6
384,914 + -0.2
384,914 + -0.2
384,914 + +0.2
384,914 + +0.4
384,914 + -0.5
384,914 + -0.2
384,914 + -0.2
384,914 + -2.2
384,914 + -0.0
384,914 + -0.0
384,914 + -0.4
384,914 + -0.2
384,914 + +0.1
384,914 + -0.0
384,914 + -0.8
384,922 - +0.5
384,922 - -0.3
384,922 - +0.2
384,922 - -0.3
384,922 - +0.2
384,922 - +0.2
384,922 - -0.0
384,922 - +0.3
384,922 - -0.1
384,922 - -0.3
384,922 - +0.2
384,922 - -1.0
384,922 - -1.0
384,922 - -0.2
384,922 - -0.1
384,922 - +0.0
384,922 - +0.0
384,922 - +0.1
384,922 - +0.2
384,929 - -0.2
384,981 + -0.4
384,981 + -2.4
385,005 - +0.8
385,092 - -0.5
385,092 - +0.9
385,099 + +0.3
385,107 - +0.6
385,130 - +0.5
385,196 + B158DRAFT_2232 0.16 -0.3
385,214 - B158DRAFT_2232 0.19 +0.2
385,219 - B158DRAFT_2232 0.19 +1.0
385,263 - B158DRAFT_2232 0.26 +0.2
385,273 - B158DRAFT_2232 0.28 +0.6
385,298 + B158DRAFT_2232 0.32 -0.7
385,305 + B158DRAFT_2232 0.33 -0.1
385,313 - B158DRAFT_2232 0.34 -0.1
385,313 - B158DRAFT_2232 0.34 -0.2
385,320 + B158DRAFT_2232 0.35 +1.5
385,320 + B158DRAFT_2232 0.35 -0.5
385,320 + B158DRAFT_2232 0.35 +0.0
385,328 - B158DRAFT_2232 0.37 +0.8
385,330 + B158DRAFT_2232 0.37 +0.1
385,330 + B158DRAFT_2232 0.37 -0.4
385,330 + B158DRAFT_2232 0.37 +0.4
385,338 - B158DRAFT_2232 0.38 +0.3
385,338 - B158DRAFT_2232 0.38 +0.1
385,340 + B158DRAFT_2232 0.39 -0.4
385,375 + B158DRAFT_2232 0.44 +0.1
385,375 + B158DRAFT_2232 0.44 -0.3
385,375 + B158DRAFT_2232 0.44 -0.3
385,375 + B158DRAFT_2232 0.44 +0.3
385,375 + B158DRAFT_2232 0.44 -0.6
385,375 + B158DRAFT_2232 0.44 +0.3
385,375 + B158DRAFT_2232 0.44 -0.2
385,375 + B158DRAFT_2232 0.44 -0.1
385,375 + B158DRAFT_2232 0.44 +0.2
385,375 + B158DRAFT_2232 0.44 -0.1
385,383 - B158DRAFT_2232 0.45 +0.5
385,383 - B158DRAFT_2232 0.45 -0.4
385,383 - B158DRAFT_2232 0.45 +0.0
385,383 - B158DRAFT_2232 0.45 -0.1
385,383 - B158DRAFT_2232 0.45 +0.2
385,383 - B158DRAFT_2232 0.45 +0.2
385,383 - B158DRAFT_2232 0.45 -0.3
385,383 - B158DRAFT_2232 0.45 +0.1
385,383 - B158DRAFT_2232 0.45 -0.1
385,383 - B158DRAFT_2232 0.45 +0.1

Or see this region's nucleotide sequence