Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2222

Experiment: m.b. benzoic 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2221 and B158DRAFT_2222 are separated by 64 nucleotidesB158DRAFT_2222 and B158DRAFT_2223 are separated by 286 nucleotides B158DRAFT_2221: B158DRAFT_2221 - acetylornithine and succinylornithine transaminases/succinylornithine transaminase family, at 370,729 to 371,949 _2221 B158DRAFT_2222: B158DRAFT_2222 - hypothetical protein, at 372,014 to 372,559 _2222 B158DRAFT_2223: B158DRAFT_2223 - Outer membrane protein W, at 372,846 to 373,520 _2223 Position (kb) 372 373Strain fitness (log2 ratio) -3 -2 -1 0 1at 371.052 kb on + strand, within B158DRAFT_2221at 371.067 kb on - strand, within B158DRAFT_2221at 371.077 kb on + strand, within B158DRAFT_2221at 371.162 kb on + strand, within B158DRAFT_2221at 371.162 kb on + strand, within B158DRAFT_2221at 371.221 kb on - strand, within B158DRAFT_2221at 371.221 kb on - strand, within B158DRAFT_2221at 371.221 kb on - strand, within B158DRAFT_2221at 371.248 kb on + strand, within B158DRAFT_2221at 371.256 kb on - strand, within B158DRAFT_2221at 371.256 kb on - strand, within B158DRAFT_2221at 371.312 kb on + strand, within B158DRAFT_2221at 371.312 kb on + strand, within B158DRAFT_2221at 371.322 kb on + strand, within B158DRAFT_2221at 371.440 kb on + strand, within B158DRAFT_2221at 371.460 kb on + strand, within B158DRAFT_2221at 371.474 kb on - strand, within B158DRAFT_2221at 371.474 kb on - strand, within B158DRAFT_2221at 371.475 kb on - strand, within B158DRAFT_2221at 371.484 kb on - strand, within B158DRAFT_2221at 371.500 kb on + strand, within B158DRAFT_2221at 371.532 kb on + strand, within B158DRAFT_2221at 371.538 kb on - strand, within B158DRAFT_2221at 371.566 kb on - strand, within B158DRAFT_2221at 371.577 kb on + strand, within B158DRAFT_2221at 371.577 kb on + strand, within B158DRAFT_2221at 371.585 kb on - strand, within B158DRAFT_2221at 371.607 kb on - strand, within B158DRAFT_2221at 371.607 kb on - strand, within B158DRAFT_2221at 371.624 kb on - strand, within B158DRAFT_2221at 371.670 kb on + strand, within B158DRAFT_2221at 371.743 kb on - strand, within B158DRAFT_2221at 371.883 kb on - strandat 371.908 kb on + strandat 371.908 kb on + strandat 371.909 kb on + strandat 371.916 kb on - strandat 371.917 kb on - strandat 372.168 kb on + strand, within B158DRAFT_2222at 372.302 kb on + strand, within B158DRAFT_2222at 372.347 kb on + strand, within B158DRAFT_2222at 372.366 kb on - strand, within B158DRAFT_2222at 372.379 kb on + strand, within B158DRAFT_2222at 372.379 kb on + strand, within B158DRAFT_2222at 372.379 kb on + strand, within B158DRAFT_2222at 372.379 kb on + strand, within B158DRAFT_2222at 372.387 kb on - strand, within B158DRAFT_2222at 372.387 kb on - strand, within B158DRAFT_2222at 372.387 kb on - strand, within B158DRAFT_2222at 372.387 kb on - strand, within B158DRAFT_2222at 372.387 kb on - strand, within B158DRAFT_2222at 372.387 kb on - strand, within B158DRAFT_2222at 372.387 kb on - strand, within B158DRAFT_2222at 372.630 kb on - strandat 372.651 kb on + strandat 372.756 kb on - strandat 372.778 kb on - strandat 372.779 kb on - strandat 372.891 kb on + strandat 372.899 kb on - strandat 372.916 kb on + strand, within B158DRAFT_2223at 372.960 kb on + strand, within B158DRAFT_2223at 372.966 kb on - strand, within B158DRAFT_2223at 372.995 kb on + strand, within B158DRAFT_2223at 373.000 kb on + strand, within B158DRAFT_2223at 373.062 kb on - strand, within B158DRAFT_2223at 373.148 kb on - strand, within B158DRAFT_2223at 373.148 kb on - strand, within B158DRAFT_2223at 373.190 kb on + strand, within B158DRAFT_2223at 373.198 kb on - strand, within B158DRAFT_2223at 373.203 kb on - strand, within B158DRAFT_2223at 373.220 kb on - strand, within B158DRAFT_2223at 373.291 kb on - strand, within B158DRAFT_2223at 373.355 kb on - strand, within B158DRAFT_2223at 373.360 kb on - strand, within B158DRAFT_2223at 373.522 kb on - strandat 373.550 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. benzoic 0.2 mg/ml
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371,052 + B158DRAFT_2221 0.26 -1.7
371,067 - B158DRAFT_2221 0.28 -0.4
371,077 + B158DRAFT_2221 0.29 -2.0
371,162 + B158DRAFT_2221 0.35 -1.0
371,162 + B158DRAFT_2221 0.35 -1.7
371,221 - B158DRAFT_2221 0.40 -1.2
371,221 - B158DRAFT_2221 0.40 -0.3
371,221 - B158DRAFT_2221 0.40 -2.6
371,248 + B158DRAFT_2221 0.43 -1.3
371,256 - B158DRAFT_2221 0.43 -2.5
371,256 - B158DRAFT_2221 0.43 -0.7
371,312 + B158DRAFT_2221 0.48 -2.2
371,312 + B158DRAFT_2221 0.48 -2.7
371,322 + B158DRAFT_2221 0.49 -0.8
371,440 + B158DRAFT_2221 0.58 -1.8
371,460 + B158DRAFT_2221 0.60 -2.0
371,474 - B158DRAFT_2221 0.61 -2.9
371,474 - B158DRAFT_2221 0.61 -2.0
371,475 - B158DRAFT_2221 0.61 -3.3
371,484 - B158DRAFT_2221 0.62 -1.5
371,500 + B158DRAFT_2221 0.63 -1.9
371,532 + B158DRAFT_2221 0.66 -1.5
371,538 - B158DRAFT_2221 0.66 +1.2
371,566 - B158DRAFT_2221 0.69 -1.3
371,577 + B158DRAFT_2221 0.69 -2.0
371,577 + B158DRAFT_2221 0.69 -2.4
371,585 - B158DRAFT_2221 0.70 -0.4
371,607 - B158DRAFT_2221 0.72 -0.8
371,607 - B158DRAFT_2221 0.72 -2.1
371,624 - B158DRAFT_2221 0.73 -2.0
371,670 + B158DRAFT_2221 0.77 -1.4
371,743 - B158DRAFT_2221 0.83 -1.8
371,883 - -2.0
371,908 + -1.6
371,908 + -2.3
371,909 + -2.0
371,916 - -1.6
371,917 - -2.6
372,168 + B158DRAFT_2222 0.28 -0.5
372,302 + B158DRAFT_2222 0.53 -0.5
372,347 + B158DRAFT_2222 0.61 -0.7
372,366 - B158DRAFT_2222 0.64 -0.3
372,379 + B158DRAFT_2222 0.67 -0.3
372,379 + B158DRAFT_2222 0.67 -1.0
372,379 + B158DRAFT_2222 0.67 -1.4
372,379 + B158DRAFT_2222 0.67 -0.3
372,387 - B158DRAFT_2222 0.68 -1.4
372,387 - B158DRAFT_2222 0.68 -0.2
372,387 - B158DRAFT_2222 0.68 -1.0
372,387 - B158DRAFT_2222 0.68 -0.1
372,387 - B158DRAFT_2222 0.68 +0.1
372,387 - B158DRAFT_2222 0.68 -0.1
372,387 - B158DRAFT_2222 0.68 -0.5
372,630 - -0.5
372,651 + -0.4
372,756 - +0.2
372,778 - -1.4
372,779 - +0.7
372,891 + -1.3
372,899 - -0.0
372,916 + B158DRAFT_2223 0.10 -0.6
372,960 + B158DRAFT_2223 0.17 +0.7
372,966 - B158DRAFT_2223 0.18 -2.2
372,995 + B158DRAFT_2223 0.22 -0.0
373,000 + B158DRAFT_2223 0.23 -0.2
373,062 - B158DRAFT_2223 0.32 +0.3
373,148 - B158DRAFT_2223 0.45 -0.2
373,148 - B158DRAFT_2223 0.45 +0.1
373,190 + B158DRAFT_2223 0.51 -0.1
373,198 - B158DRAFT_2223 0.52 -0.8
373,203 - B158DRAFT_2223 0.53 -0.9
373,220 - B158DRAFT_2223 0.55 -0.8
373,291 - B158DRAFT_2223 0.66 +0.3
373,355 - B158DRAFT_2223 0.75 -0.1
373,360 - B158DRAFT_2223 0.76 -0.1
373,522 - -0.4
373,550 + +0.8

Or see this region's nucleotide sequence