Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1723

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1722 and B158DRAFT_1723 are separated by 102 nucleotidesB158DRAFT_1723 and B158DRAFT_1724 are separated by 46 nucleotidesB158DRAFT_1724 and B158DRAFT_1725 are separated by 13 nucleotides B158DRAFT_1722: B158DRAFT_1722 - Collagenase and related proteases, at 1,796,281 to 1,797,597 _1722 B158DRAFT_1723: B158DRAFT_1723 - hypothetical protein, at 1,797,700 to 1,799,004 _1723 B158DRAFT_1724: B158DRAFT_1724 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 1,799,051 to 1,799,773 _1724 B158DRAFT_1725: B158DRAFT_1725 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 1,799,787 to 1,800,536 _1725 Position (kb) 1797 1798 1799 1800Strain fitness (log2 ratio) -1 0 1 2at 1796.759 kb on + strand, within B158DRAFT_1722at 1796.782 kb on + strand, within B158DRAFT_1722at 1796.790 kb on - strand, within B158DRAFT_1722at 1796.795 kb on - strand, within B158DRAFT_1722at 1796.795 kb on - strand, within B158DRAFT_1722at 1796.798 kb on + strand, within B158DRAFT_1722at 1796.798 kb on + strand, within B158DRAFT_1722at 1796.806 kb on - strand, within B158DRAFT_1722at 1796.806 kb on - strand, within B158DRAFT_1722at 1796.806 kb on - strand, within B158DRAFT_1722at 1796.899 kb on + strand, within B158DRAFT_1722at 1796.902 kb on - strand, within B158DRAFT_1722at 1796.931 kb on + strand, within B158DRAFT_1722at 1796.999 kb on + strand, within B158DRAFT_1722at 1797.009 kb on + strand, within B158DRAFT_1722at 1797.009 kb on + strand, within B158DRAFT_1722at 1797.073 kb on + strand, within B158DRAFT_1722at 1797.121 kb on + strand, within B158DRAFT_1722at 1797.163 kb on + strand, within B158DRAFT_1722at 1797.163 kb on + strand, within B158DRAFT_1722at 1797.163 kb on + strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.171 kb on - strand, within B158DRAFT_1722at 1797.202 kb on + strand, within B158DRAFT_1722at 1797.230 kb on - strand, within B158DRAFT_1722at 1797.256 kb on + strand, within B158DRAFT_1722at 1797.256 kb on + strand, within B158DRAFT_1722at 1797.383 kb on - strand, within B158DRAFT_1722at 1797.429 kb on + strand, within B158DRAFT_1722at 1797.489 kb on + strandat 1797.497 kb on - strandat 1797.497 kb on - strandat 1797.509 kb on + strandat 1797.534 kb on - strandat 1797.558 kb on - strandat 1797.629 kb on + strandat 1797.632 kb on - strandat 1797.632 kb on - strandat 1797.668 kb on + strandat 1797.786 kb on + strandat 1797.786 kb on + strandat 1797.786 kb on + strandat 1797.856 kb on - strand, within B158DRAFT_1723at 1797.866 kb on + strand, within B158DRAFT_1723at 1797.866 kb on - strand, within B158DRAFT_1723at 1797.909 kb on + strand, within B158DRAFT_1723at 1797.915 kb on + strand, within B158DRAFT_1723at 1797.923 kb on - strand, within B158DRAFT_1723at 1797.946 kb on - strand, within B158DRAFT_1723at 1797.983 kb on + strand, within B158DRAFT_1723at 1797.983 kb on + strand, within B158DRAFT_1723at 1797.983 kb on + strand, within B158DRAFT_1723at 1797.983 kb on + strand, within B158DRAFT_1723at 1797.983 kb on + strand, within B158DRAFT_1723at 1797.991 kb on - strand, within B158DRAFT_1723at 1797.991 kb on - strand, within B158DRAFT_1723at 1797.991 kb on - strand, within B158DRAFT_1723at 1797.991 kb on - strand, within B158DRAFT_1723at 1797.991 kb on - strand, within B158DRAFT_1723at 1797.991 kb on - strand, within B158DRAFT_1723at 1797.991 kb on - strand, within B158DRAFT_1723at 1797.999 kb on - strand, within B158DRAFT_1723at 1798.001 kb on + strand, within B158DRAFT_1723at 1798.001 kb on + strand, within B158DRAFT_1723at 1798.001 kb on + strand, within B158DRAFT_1723at 1798.009 kb on - strand, within B158DRAFT_1723at 1798.009 kb on - strand, within B158DRAFT_1723at 1798.015 kb on + strand, within B158DRAFT_1723at 1798.067 kb on + strand, within B158DRAFT_1723at 1798.067 kb on - strand, within B158DRAFT_1723at 1798.067 kb on - strand, within B158DRAFT_1723at 1798.084 kb on + strand, within B158DRAFT_1723at 1798.112 kb on - strand, within B158DRAFT_1723at 1798.152 kb on + strand, within B158DRAFT_1723at 1798.162 kb on + strand, within B158DRAFT_1723at 1798.162 kb on + strand, within B158DRAFT_1723at 1798.162 kb on + strand, within B158DRAFT_1723at 1798.162 kb on + strand, within B158DRAFT_1723at 1798.162 kb on + strand, within B158DRAFT_1723at 1798.167 kb on + strand, within B158DRAFT_1723at 1798.170 kb on - strand, within B158DRAFT_1723at 1798.170 kb on - strand, within B158DRAFT_1723at 1798.175 kb on - strand, within B158DRAFT_1723at 1798.177 kb on - strand, within B158DRAFT_1723at 1798.195 kb on - strand, within B158DRAFT_1723at 1798.220 kb on + strand, within B158DRAFT_1723at 1798.344 kb on + strand, within B158DRAFT_1723at 1798.352 kb on - strand, within B158DRAFT_1723at 1798.502 kb on + strand, within B158DRAFT_1723at 1798.502 kb on + strand, within B158DRAFT_1723at 1798.510 kb on - strand, within B158DRAFT_1723at 1798.510 kb on - strand, within B158DRAFT_1723at 1798.510 kb on - strand, within B158DRAFT_1723at 1798.659 kb on - strand, within B158DRAFT_1723at 1798.702 kb on + strand, within B158DRAFT_1723at 1798.702 kb on + strand, within B158DRAFT_1723at 1798.702 kb on + strand, within B158DRAFT_1723at 1798.710 kb on - strand, within B158DRAFT_1723at 1798.710 kb on - strand, within B158DRAFT_1723at 1798.728 kb on + strand, within B158DRAFT_1723at 1798.728 kb on + strand, within B158DRAFT_1723at 1798.731 kb on - strand, within B158DRAFT_1723at 1798.736 kb on - strand, within B158DRAFT_1723at 1798.741 kb on - strand, within B158DRAFT_1723at 1798.751 kb on - strand, within B158DRAFT_1723at 1798.762 kb on - strand, within B158DRAFT_1723at 1798.860 kb on + strand, within B158DRAFT_1723at 1799.053 kb on + strandat 1799.129 kb on + strand, within B158DRAFT_1724at 1799.129 kb on - strand, within B158DRAFT_1724at 1799.166 kb on + strand, within B158DRAFT_1724at 1799.166 kb on + strand, within B158DRAFT_1724at 1799.193 kb on + strand, within B158DRAFT_1724at 1799.201 kb on - strand, within B158DRAFT_1724at 1799.318 kb on + strand, within B158DRAFT_1724at 1799.364 kb on + strand, within B158DRAFT_1724at 1799.509 kb on + strand, within B158DRAFT_1724at 1799.524 kb on - strand, within B158DRAFT_1724at 1799.695 kb on + strand, within B158DRAFT_1724at 1799.805 kb on - strandat 1799.830 kb on + strandat 1799.830 kb on + strandat 1799.893 kb on + strand, within B158DRAFT_1725at 1799.939 kb on - strand, within B158DRAFT_1725at 1799.994 kb on + strand, within B158DRAFT_1725

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,796,759 + B158DRAFT_1722 0.36 -0.5
1,796,782 + B158DRAFT_1722 0.38 +0.1
1,796,790 - B158DRAFT_1722 0.39 -0.1
1,796,795 - B158DRAFT_1722 0.39 -0.4
1,796,795 - B158DRAFT_1722 0.39 -0.2
1,796,798 + B158DRAFT_1722 0.39 +0.0
1,796,798 + B158DRAFT_1722 0.39 +0.2
1,796,806 - B158DRAFT_1722 0.40 +0.2
1,796,806 - B158DRAFT_1722 0.40 -0.2
1,796,806 - B158DRAFT_1722 0.40 -0.2
1,796,899 + B158DRAFT_1722 0.47 +0.0
1,796,902 - B158DRAFT_1722 0.47 -0.1
1,796,931 + B158DRAFT_1722 0.49 +0.0
1,796,999 + B158DRAFT_1722 0.55 +0.3
1,797,009 + B158DRAFT_1722 0.55 -0.2
1,797,009 + B158DRAFT_1722 0.55 +0.2
1,797,073 + B158DRAFT_1722 0.60 +0.1
1,797,121 + B158DRAFT_1722 0.64 -0.0
1,797,163 + B158DRAFT_1722 0.67 +0.2
1,797,163 + B158DRAFT_1722 0.67 +0.7
1,797,163 + B158DRAFT_1722 0.67 +0.3
1,797,171 - B158DRAFT_1722 0.68 -0.0
1,797,171 - B158DRAFT_1722 0.68 -0.2
1,797,171 - B158DRAFT_1722 0.68 +0.2
1,797,171 - B158DRAFT_1722 0.68 -0.6
1,797,171 - B158DRAFT_1722 0.68 +0.4
1,797,171 - B158DRAFT_1722 0.68 -0.2
1,797,171 - B158DRAFT_1722 0.68 +0.1
1,797,202 + B158DRAFT_1722 0.70 +0.6
1,797,230 - B158DRAFT_1722 0.72 -0.3
1,797,256 + B158DRAFT_1722 0.74 -0.3
1,797,256 + B158DRAFT_1722 0.74 -0.2
1,797,383 - B158DRAFT_1722 0.84 -0.3
1,797,429 + B158DRAFT_1722 0.87 +0.2
1,797,489 + -0.2
1,797,497 - -0.4
1,797,497 - -0.1
1,797,509 + -0.6
1,797,534 - -1.5
1,797,558 - -0.2
1,797,629 + -0.2
1,797,632 - -0.3
1,797,632 - -0.2
1,797,668 + +0.8
1,797,786 + -1.2
1,797,786 + +0.1
1,797,786 + -1.7
1,797,856 - B158DRAFT_1723 0.12 -0.1
1,797,866 + B158DRAFT_1723 0.13 +0.3
1,797,866 - B158DRAFT_1723 0.13 -0.0
1,797,909 + B158DRAFT_1723 0.16 -1.2
1,797,915 + B158DRAFT_1723 0.16 +0.2
1,797,923 - B158DRAFT_1723 0.17 -0.8
1,797,946 - B158DRAFT_1723 0.19 -0.6
1,797,983 + B158DRAFT_1723 0.22 +0.0
1,797,983 + B158DRAFT_1723 0.22 -0.1
1,797,983 + B158DRAFT_1723 0.22 -0.5
1,797,983 + B158DRAFT_1723 0.22 +0.8
1,797,983 + B158DRAFT_1723 0.22 -0.2
1,797,991 - B158DRAFT_1723 0.22 +1.8
1,797,991 - B158DRAFT_1723 0.22 -0.0
1,797,991 - B158DRAFT_1723 0.22 -0.0
1,797,991 - B158DRAFT_1723 0.22 -0.5
1,797,991 - B158DRAFT_1723 0.22 +0.0
1,797,991 - B158DRAFT_1723 0.22 +0.0
1,797,991 - B158DRAFT_1723 0.22 -0.7
1,797,999 - B158DRAFT_1723 0.23 +0.1
1,798,001 + B158DRAFT_1723 0.23 -0.4
1,798,001 + B158DRAFT_1723 0.23 -0.1
1,798,001 + B158DRAFT_1723 0.23 -0.1
1,798,009 - B158DRAFT_1723 0.24 -0.3
1,798,009 - B158DRAFT_1723 0.24 -1.2
1,798,015 + B158DRAFT_1723 0.24 -0.1
1,798,067 + B158DRAFT_1723 0.28 +0.1
1,798,067 - B158DRAFT_1723 0.28 -0.3
1,798,067 - B158DRAFT_1723 0.28 -0.2
1,798,084 + B158DRAFT_1723 0.29 -0.2
1,798,112 - B158DRAFT_1723 0.32 +0.3
1,798,152 + B158DRAFT_1723 0.35 +0.2
1,798,162 + B158DRAFT_1723 0.35 -0.8
1,798,162 + B158DRAFT_1723 0.35 -0.3
1,798,162 + B158DRAFT_1723 0.35 +0.1
1,798,162 + B158DRAFT_1723 0.35 -0.7
1,798,162 + B158DRAFT_1723 0.35 -0.1
1,798,167 + B158DRAFT_1723 0.36 +0.5
1,798,170 - B158DRAFT_1723 0.36 +0.3
1,798,170 - B158DRAFT_1723 0.36 -0.2
1,798,175 - B158DRAFT_1723 0.36 -0.0
1,798,177 - B158DRAFT_1723 0.37 -0.0
1,798,195 - B158DRAFT_1723 0.38 -0.1
1,798,220 + B158DRAFT_1723 0.40 +0.1
1,798,344 + B158DRAFT_1723 0.49 -0.5
1,798,352 - B158DRAFT_1723 0.50 -0.6
1,798,502 + B158DRAFT_1723 0.61 -0.2
1,798,502 + B158DRAFT_1723 0.61 -0.3
1,798,510 - B158DRAFT_1723 0.62 -0.2
1,798,510 - B158DRAFT_1723 0.62 -0.3
1,798,510 - B158DRAFT_1723 0.62 -0.1
1,798,659 - B158DRAFT_1723 0.73 -0.5
1,798,702 + B158DRAFT_1723 0.77 +0.0
1,798,702 + B158DRAFT_1723 0.77 +0.1
1,798,702 + B158DRAFT_1723 0.77 +0.7
1,798,710 - B158DRAFT_1723 0.77 -0.4
1,798,710 - B158DRAFT_1723 0.77 +0.3
1,798,728 + B158DRAFT_1723 0.79 +0.5
1,798,728 + B158DRAFT_1723 0.79 +0.5
1,798,731 - B158DRAFT_1723 0.79 -1.0
1,798,736 - B158DRAFT_1723 0.79 -0.8
1,798,741 - B158DRAFT_1723 0.80 -0.7
1,798,751 - B158DRAFT_1723 0.81 -0.3
1,798,762 - B158DRAFT_1723 0.81 -0.0
1,798,860 + B158DRAFT_1723 0.89 +0.2
1,799,053 + -0.2
1,799,129 + B158DRAFT_1724 0.11 -0.4
1,799,129 - B158DRAFT_1724 0.11 -0.3
1,799,166 + B158DRAFT_1724 0.16 -0.0
1,799,166 + B158DRAFT_1724 0.16 +0.4
1,799,193 + B158DRAFT_1724 0.20 -0.0
1,799,201 - B158DRAFT_1724 0.21 +0.6
1,799,318 + B158DRAFT_1724 0.37 +0.2
1,799,364 + B158DRAFT_1724 0.43 +0.0
1,799,509 + B158DRAFT_1724 0.63 -0.0
1,799,524 - B158DRAFT_1724 0.65 -0.7
1,799,695 + B158DRAFT_1724 0.89 -0.2
1,799,805 - +0.2
1,799,830 + -0.2
1,799,830 + -0.1
1,799,893 + B158DRAFT_1725 0.14 +0.6
1,799,939 - B158DRAFT_1725 0.20 -1.3
1,799,994 + B158DRAFT_1725 0.28 -1.3

Or see this region's nucleotide sequence