Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1719 and B158DRAFT_1720 are separated by 11 nucleotides B158DRAFT_1720 and B158DRAFT_1721 are separated by 3 nucleotides B158DRAFT_1721 and B158DRAFT_1722 are separated by 14 nucleotides
B158DRAFT_1719: B158DRAFT_1719 - 4-hydroxyphenylpyruvate dioxygenase, at 1,793,808 to 1,794,890
_1719
B158DRAFT_1720: B158DRAFT_1720 - Lactoylglutathione lyase and related lyases, at 1,794,902 to 1,795,441
_1720
B158DRAFT_1721: B158DRAFT_1721 - Phenylalanine 4-hydroxylase (EC 1.14.16.1), at 1,795,445 to 1,796,266
_1721
B158DRAFT_1722: B158DRAFT_1722 - Collagenase and related proteases, at 1,796,281 to 1,797,597
_1722
Position (kb)
1794
1795
1796 Strain fitness (log2 ratio)
-2
-1
0
1 at 1793.919 kb on + strand, within B158DRAFT_1719 at 1793.945 kb on + strand, within B158DRAFT_1719 at 1793.953 kb on - strand, within B158DRAFT_1719 at 1794.059 kb on - strand, within B158DRAFT_1719 at 1794.078 kb on - strand, within B158DRAFT_1719 at 1794.093 kb on + strand, within B158DRAFT_1719 at 1794.152 kb on + strand, within B158DRAFT_1719 at 1794.152 kb on + strand, within B158DRAFT_1719 at 1794.160 kb on - strand, within B158DRAFT_1719 at 1794.160 kb on - strand, within B158DRAFT_1719 at 1794.212 kb on - strand, within B158DRAFT_1719 at 1794.214 kb on + strand, within B158DRAFT_1719 at 1794.228 kb on + strand, within B158DRAFT_1719 at 1794.236 kb on - strand, within B158DRAFT_1719 at 1794.270 kb on + strand, within B158DRAFT_1719 at 1794.369 kb on - strand, within B158DRAFT_1719 at 1794.428 kb on - strand, within B158DRAFT_1719 at 1794.448 kb on - strand, within B158DRAFT_1719 at 1794.483 kb on - strand, within B158DRAFT_1719 at 1794.544 kb on + strand, within B158DRAFT_1719 at 1794.544 kb on + strand, within B158DRAFT_1719 at 1794.544 kb on + strand, within B158DRAFT_1719 at 1794.552 kb on - strand, within B158DRAFT_1719 at 1794.560 kb on - strand, within B158DRAFT_1719 at 1794.609 kb on - strand, within B158DRAFT_1719 at 1794.609 kb on - strand, within B158DRAFT_1719 at 1794.632 kb on - strand, within B158DRAFT_1719 at 1794.714 kb on + strand, within B158DRAFT_1719 at 1794.737 kb on + strand, within B158DRAFT_1719 at 1794.885 kb on + strand at 1794.885 kb on + strand at 1794.893 kb on - strand at 1794.914 kb on + strand at 1794.977 kb on + strand, within B158DRAFT_1720 at 1795.013 kb on - strand, within B158DRAFT_1720 at 1795.034 kb on + strand, within B158DRAFT_1720 at 1795.034 kb on - strand, within B158DRAFT_1720 at 1795.129 kb on + strand, within B158DRAFT_1720 at 1795.154 kb on - strand, within B158DRAFT_1720 at 1795.155 kb on + strand, within B158DRAFT_1720 at 1795.155 kb on + strand, within B158DRAFT_1720 at 1795.155 kb on + strand, within B158DRAFT_1720 at 1795.155 kb on + strand, within B158DRAFT_1720 at 1795.155 kb on + strand, within B158DRAFT_1720 at 1795.163 kb on - strand, within B158DRAFT_1720 at 1795.163 kb on - strand, within B158DRAFT_1720 at 1795.163 kb on - strand, within B158DRAFT_1720 at 1795.221 kb on + strand, within B158DRAFT_1720 at 1795.221 kb on + strand, within B158DRAFT_1720 at 1795.221 kb on + strand, within B158DRAFT_1720 at 1795.221 kb on + strand, within B158DRAFT_1720 at 1795.221 kb on + strand, within B158DRAFT_1720 at 1795.221 kb on + strand, within B158DRAFT_1720 at 1795.229 kb on - strand, within B158DRAFT_1720 at 1795.229 kb on - strand, within B158DRAFT_1720 at 1795.298 kb on + strand, within B158DRAFT_1720 at 1795.298 kb on + strand, within B158DRAFT_1720 at 1795.306 kb on - strand, within B158DRAFT_1720 at 1795.319 kb on + strand, within B158DRAFT_1720 at 1795.325 kb on - strand, within B158DRAFT_1720 at 1795.435 kb on + strand at 1795.435 kb on + strand at 1795.436 kb on + strand at 1795.443 kb on - strand at 1795.584 kb on + strand, within B158DRAFT_1721 at 1795.633 kb on + strand, within B158DRAFT_1721 at 1795.633 kb on + strand, within B158DRAFT_1721 at 1795.638 kb on + strand, within B158DRAFT_1721 at 1795.823 kb on + strand, within B158DRAFT_1721 at 1795.823 kb on + strand, within B158DRAFT_1721 at 1795.831 kb on - strand, within B158DRAFT_1721 at 1795.831 kb on - strand, within B158DRAFT_1721 at 1795.831 kb on - strand, within B158DRAFT_1721 at 1795.831 kb on - strand, within B158DRAFT_1721 at 1795.831 kb on - strand, within B158DRAFT_1721 at 1795.892 kb on - strand, within B158DRAFT_1721 at 1795.954 kb on + strand, within B158DRAFT_1721 at 1795.962 kb on - strand, within B158DRAFT_1721 at 1796.012 kb on + strand, within B158DRAFT_1721 at 1796.020 kb on - strand, within B158DRAFT_1721 at 1796.020 kb on - strand, within B158DRAFT_1721 at 1796.076 kb on - strand, within B158DRAFT_1721 at 1796.084 kb on - strand, within B158DRAFT_1721 at 1796.296 kb on + strand at 1796.304 kb on - strand at 1796.306 kb on - strand at 1796.309 kb on - strand at 1796.356 kb on - strand at 1796.376 kb on - strand at 1796.384 kb on + strand at 1796.384 kb on + strand at 1796.384 kb on + strand at 1796.384 kb on + strand at 1796.392 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,793,919 + B158DRAFT_1719 0.10 +0.1 1,793,945 + B158DRAFT_1719 0.13 +0.1 1,793,953 - B158DRAFT_1719 0.13 -0.1 1,794,059 - B158DRAFT_1719 0.23 -0.2 1,794,078 - B158DRAFT_1719 0.25 +0.3 1,794,093 + B158DRAFT_1719 0.26 -0.3 1,794,152 + B158DRAFT_1719 0.32 +0.1 1,794,152 + B158DRAFT_1719 0.32 -0.8 1,794,160 - B158DRAFT_1719 0.33 -0.8 1,794,160 - B158DRAFT_1719 0.33 -0.7 1,794,212 - B158DRAFT_1719 0.37 -0.0 1,794,214 + B158DRAFT_1719 0.37 +0.6 1,794,228 + B158DRAFT_1719 0.39 +0.6 1,794,236 - B158DRAFT_1719 0.40 +0.5 1,794,270 + B158DRAFT_1719 0.43 -1.0 1,794,369 - B158DRAFT_1719 0.52 -0.0 1,794,428 - B158DRAFT_1719 0.57 +0.0 1,794,448 - B158DRAFT_1719 0.59 -0.8 1,794,483 - B158DRAFT_1719 0.62 -0.6 1,794,544 + B158DRAFT_1719 0.68 -0.5 1,794,544 + B158DRAFT_1719 0.68 -0.2 1,794,544 + B158DRAFT_1719 0.68 +0.4 1,794,552 - B158DRAFT_1719 0.69 -0.4 1,794,560 - B158DRAFT_1719 0.69 +0.1 1,794,609 - B158DRAFT_1719 0.74 -1.1 1,794,609 - B158DRAFT_1719 0.74 -0.2 1,794,632 - B158DRAFT_1719 0.76 -0.5 1,794,714 + B158DRAFT_1719 0.84 -0.7 1,794,737 + B158DRAFT_1719 0.86 +0.4 1,794,885 + +1.7 1,794,885 + +0.4 1,794,893 - -0.3 1,794,914 + +0.2 1,794,977 + B158DRAFT_1720 0.14 -0.5 1,795,013 - B158DRAFT_1720 0.21 +0.4 1,795,034 + B158DRAFT_1720 0.24 -0.6 1,795,034 - B158DRAFT_1720 0.24 -0.4 1,795,129 + B158DRAFT_1720 0.42 -1.2 1,795,154 - B158DRAFT_1720 0.47 -0.1 1,795,155 + B158DRAFT_1720 0.47 +0.3 1,795,155 + B158DRAFT_1720 0.47 +0.2 1,795,155 + B158DRAFT_1720 0.47 -0.6 1,795,155 + B158DRAFT_1720 0.47 -0.1 1,795,155 + B158DRAFT_1720 0.47 -0.6 1,795,163 - B158DRAFT_1720 0.48 -0.6 1,795,163 - B158DRAFT_1720 0.48 -0.2 1,795,163 - B158DRAFT_1720 0.48 -0.4 1,795,221 + B158DRAFT_1720 0.59 -0.6 1,795,221 + B158DRAFT_1720 0.59 -0.9 1,795,221 + B158DRAFT_1720 0.59 +0.1 1,795,221 + B158DRAFT_1720 0.59 +0.7 1,795,221 + B158DRAFT_1720 0.59 -0.2 1,795,221 + B158DRAFT_1720 0.59 -0.1 1,795,229 - B158DRAFT_1720 0.61 -0.8 1,795,229 - B158DRAFT_1720 0.61 +0.3 1,795,298 + B158DRAFT_1720 0.73 -0.9 1,795,298 + B158DRAFT_1720 0.73 -0.1 1,795,306 - B158DRAFT_1720 0.75 -0.5 1,795,319 + B158DRAFT_1720 0.77 -0.4 1,795,325 - B158DRAFT_1720 0.78 -0.3 1,795,435 + +0.0 1,795,435 + +0.0 1,795,436 + -0.3 1,795,443 - -0.0 1,795,584 + B158DRAFT_1721 0.17 +0.1 1,795,633 + B158DRAFT_1721 0.23 -0.4 1,795,633 + B158DRAFT_1721 0.23 -0.3 1,795,638 + B158DRAFT_1721 0.23 +0.4 1,795,823 + B158DRAFT_1721 0.46 -0.2 1,795,823 + B158DRAFT_1721 0.46 -0.8 1,795,831 - B158DRAFT_1721 0.47 -0.3 1,795,831 - B158DRAFT_1721 0.47 +0.6 1,795,831 - B158DRAFT_1721 0.47 -1.9 1,795,831 - B158DRAFT_1721 0.47 +0.2 1,795,831 - B158DRAFT_1721 0.47 -0.4 1,795,892 - B158DRAFT_1721 0.54 -0.1 1,795,954 + B158DRAFT_1721 0.62 +0.0 1,795,962 - B158DRAFT_1721 0.63 -0.5 1,796,012 + B158DRAFT_1721 0.69 -0.0 1,796,020 - B158DRAFT_1721 0.70 -0.5 1,796,020 - B158DRAFT_1721 0.70 +0.1 1,796,076 - B158DRAFT_1721 0.77 +0.1 1,796,084 - B158DRAFT_1721 0.78 -0.1 1,796,296 + -0.9 1,796,304 - -0.6 1,796,306 - -0.1 1,796,309 - -0.4 1,796,356 - -0.8 1,796,376 - -0.0 1,796,384 + -0.0 1,796,384 + -0.6 1,796,384 + -0.0 1,796,384 + -0.2 1,796,392 - -0.4
Or see this region's nucleotide sequence