Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0972 and B158DRAFT_0973 are separated by 37 nucleotides B158DRAFT_0973 and B158DRAFT_0974 are separated by 55 nucleotides B158DRAFT_0974 and B158DRAFT_0975 are separated by 196 nucleotides
B158DRAFT_0972: B158DRAFT_0972 - 3-deoxy-D-manno-octulosonic-acid transferase, at 1,002,433 to 1,003,680
_0972
B158DRAFT_0973: B158DRAFT_0973 - type I secretion outer membrane protein, TolC family, at 1,003,718 to 1,005,091
_0973
B158DRAFT_0974: B158DRAFT_0974 - Protein-L-isoaspartate carboxylmethyltransferase, at 1,005,147 to 1,005,815
_0974
B158DRAFT_0975: B158DRAFT_0975 - nudix-type nucleoside diphosphatase, YffH/AdpP family, at 1,006,012 to 1,006,623
_0975
Position (kb)
1003
1004
1005
1006 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1003.724 kb on - strand at 1003.724 kb on - strand at 1003.782 kb on + strand at 1003.797 kb on - strand at 1003.848 kb on - strand at 1003.848 kb on - strand at 1003.918 kb on + strand, within B158DRAFT_0973 at 1003.918 kb on + strand, within B158DRAFT_0973 at 1003.926 kb on - strand, within B158DRAFT_0973 at 1003.987 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.991 kb on + strand, within B158DRAFT_0973 at 1003.999 kb on - strand, within B158DRAFT_0973 at 1004.035 kb on + strand, within B158DRAFT_0973 at 1004.039 kb on - strand, within B158DRAFT_0973 at 1004.094 kb on + strand, within B158DRAFT_0973 at 1004.094 kb on + strand, within B158DRAFT_0973 at 1004.165 kb on + strand, within B158DRAFT_0973 at 1004.173 kb on - strand, within B158DRAFT_0973 at 1004.173 kb on - strand, within B158DRAFT_0973 at 1004.173 kb on - strand, within B158DRAFT_0973 at 1004.223 kb on - strand, within B158DRAFT_0973 at 1004.223 kb on - strand, within B158DRAFT_0973 at 1004.231 kb on + strand, within B158DRAFT_0973 at 1004.231 kb on + strand, within B158DRAFT_0973 at 1004.239 kb on - strand, within B158DRAFT_0973 at 1004.241 kb on + strand, within B158DRAFT_0973 at 1004.254 kb on - strand, within B158DRAFT_0973 at 1004.310 kb on + strand, within B158DRAFT_0973 at 1004.310 kb on + strand, within B158DRAFT_0973 at 1004.444 kb on + strand, within B158DRAFT_0973 at 1004.446 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on + strand, within B158DRAFT_0973 at 1004.454 kb on - strand, within B158DRAFT_0973 at 1004.462 kb on - strand, within B158DRAFT_0973 at 1004.462 kb on - strand, within B158DRAFT_0973 at 1004.489 kb on + strand, within B158DRAFT_0973 at 1004.497 kb on - strand, within B158DRAFT_0973 at 1004.505 kb on + strand, within B158DRAFT_0973 at 1004.538 kb on + strand, within B158DRAFT_0973 at 1004.546 kb on - strand, within B158DRAFT_0973 at 1004.546 kb on - strand, within B158DRAFT_0973 at 1004.546 kb on - strand, within B158DRAFT_0973 at 1004.592 kb on - strand, within B158DRAFT_0973 at 1004.651 kb on + strand, within B158DRAFT_0973 at 1004.651 kb on + strand, within B158DRAFT_0973 at 1004.694 kb on + strand, within B158DRAFT_0973 at 1004.696 kb on + strand, within B158DRAFT_0973 at 1004.696 kb on + strand, within B158DRAFT_0973 at 1004.696 kb on + strand, within B158DRAFT_0973 at 1004.696 kb on + strand, within B158DRAFT_0973 at 1004.696 kb on + strand, within B158DRAFT_0973 at 1004.696 kb on + strand, within B158DRAFT_0973 at 1004.701 kb on + strand, within B158DRAFT_0973 at 1004.704 kb on - strand, within B158DRAFT_0973 at 1004.704 kb on - strand, within B158DRAFT_0973 at 1004.704 kb on - strand, within B158DRAFT_0973 at 1004.704 kb on - strand, within B158DRAFT_0973 at 1004.704 kb on - strand, within B158DRAFT_0973 at 1004.704 kb on - strand, within B158DRAFT_0973 at 1004.704 kb on - strand, within B158DRAFT_0973 at 1004.704 kb on - strand, within B158DRAFT_0973 at 1004.709 kb on - strand, within B158DRAFT_0973 at 1004.717 kb on - strand, within B158DRAFT_0973 at 1004.725 kb on - strand, within B158DRAFT_0973 at 1004.729 kb on - strand, within B158DRAFT_0973 at 1004.731 kb on + strand, within B158DRAFT_0973 at 1004.739 kb on - strand, within B158DRAFT_0973 at 1004.818 kb on + strand, within B158DRAFT_0973 at 1004.840 kb on + strand, within B158DRAFT_0973 at 1004.848 kb on - strand, within B158DRAFT_0973 at 1004.886 kb on + strand, within B158DRAFT_0973 at 1004.891 kb on + strand, within B158DRAFT_0973 at 1004.935 kb on - strand, within B158DRAFT_0973 at 1005.011 kb on - strand at 1005.278 kb on + strand, within B158DRAFT_0974 at 1005.278 kb on - strand, within B158DRAFT_0974 at 1005.283 kb on + strand, within B158DRAFT_0974 at 1005.283 kb on + strand, within B158DRAFT_0974 at 1005.326 kb on - strand, within B158DRAFT_0974 at 1005.326 kb on - strand, within B158DRAFT_0974 at 1005.373 kb on + strand, within B158DRAFT_0974 at 1005.453 kb on - strand, within B158DRAFT_0974 at 1005.497 kb on - strand, within B158DRAFT_0974 at 1005.497 kb on - strand, within B158DRAFT_0974 at 1005.521 kb on + strand, within B158DRAFT_0974 at 1005.531 kb on - strand, within B158DRAFT_0974 at 1005.565 kb on - strand, within B158DRAFT_0974 at 1005.593 kb on + strand, within B158DRAFT_0974 at 1005.593 kb on + strand, within B158DRAFT_0974 at 1005.594 kb on - strand, within B158DRAFT_0974 at 1005.627 kb on - strand, within B158DRAFT_0974 at 1005.629 kb on + strand, within B158DRAFT_0974 at 1005.637 kb on - strand, within B158DRAFT_0974 at 1005.637 kb on - strand, within B158DRAFT_0974 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.675 kb on + strand, within B158DRAFT_0974 at 1005.683 kb on - strand, within B158DRAFT_0974 at 1005.694 kb on - strand, within B158DRAFT_0974 at 1005.772 kb on - strand at 1005.774 kb on + strand at 1005.841 kb on - strand at 1005.841 kb on - strand at 1005.876 kb on + strand at 1005.876 kb on + strand at 1005.884 kb on - strand at 1005.884 kb on - strand at 1005.903 kb on + strand at 1005.904 kb on - strand at 1005.924 kb on - strand at 1005.972 kb on - strand at 1005.986 kb on + strand at 1005.993 kb on - strand at 1006.004 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,003,724 - -0.8 1,003,724 - -0.2 1,003,782 + -2.1 1,003,797 - -4.0 1,003,848 - -2.1 1,003,848 - -2.2 1,003,918 + B158DRAFT_0973 0.15 -2.6 1,003,918 + B158DRAFT_0973 0.15 -3.1 1,003,926 - B158DRAFT_0973 0.15 -1.6 1,003,987 + B158DRAFT_0973 0.20 -2.5 1,003,991 + B158DRAFT_0973 0.20 -2.7 1,003,991 + B158DRAFT_0973 0.20 -2.6 1,003,991 + B158DRAFT_0973 0.20 -2.6 1,003,991 + B158DRAFT_0973 0.20 -4.3 1,003,991 + B158DRAFT_0973 0.20 -2.0 1,003,999 - B158DRAFT_0973 0.20 -3.0 1,004,035 + B158DRAFT_0973 0.23 -2.2 1,004,039 - B158DRAFT_0973 0.23 -2.5 1,004,094 + B158DRAFT_0973 0.27 -4.9 1,004,094 + B158DRAFT_0973 0.27 -2.5 1,004,165 + B158DRAFT_0973 0.33 -2.8 1,004,173 - B158DRAFT_0973 0.33 -1.4 1,004,173 - B158DRAFT_0973 0.33 -1.8 1,004,173 - B158DRAFT_0973 0.33 -2.5 1,004,223 - B158DRAFT_0973 0.37 -1.7 1,004,223 - B158DRAFT_0973 0.37 -2.9 1,004,231 + B158DRAFT_0973 0.37 -1.6 1,004,231 + B158DRAFT_0973 0.37 -1.8 1,004,239 - B158DRAFT_0973 0.38 -5.1 1,004,241 + B158DRAFT_0973 0.38 -1.8 1,004,254 - B158DRAFT_0973 0.39 -2.9 1,004,310 + B158DRAFT_0973 0.43 -2.1 1,004,310 + B158DRAFT_0973 0.43 -2.2 1,004,444 + B158DRAFT_0973 0.53 -3.4 1,004,446 + B158DRAFT_0973 0.53 -1.6 1,004,454 + B158DRAFT_0973 0.54 +1.2 1,004,454 + B158DRAFT_0973 0.54 -1.7 1,004,454 + B158DRAFT_0973 0.54 -2.1 1,004,454 - B158DRAFT_0973 0.54 -1.6 1,004,462 - B158DRAFT_0973 0.54 -1.9 1,004,462 - B158DRAFT_0973 0.54 -4.0 1,004,489 + B158DRAFT_0973 0.56 -3.2 1,004,497 - B158DRAFT_0973 0.57 -2.4 1,004,505 + B158DRAFT_0973 0.57 -2.2 1,004,538 + B158DRAFT_0973 0.60 -0.8 1,004,546 - B158DRAFT_0973 0.60 -4.1 1,004,546 - B158DRAFT_0973 0.60 -2.1 1,004,546 - B158DRAFT_0973 0.60 +0.5 1,004,592 - B158DRAFT_0973 0.64 -2.9 1,004,651 + B158DRAFT_0973 0.68 -2.7 1,004,651 + B158DRAFT_0973 0.68 -2.1 1,004,694 + B158DRAFT_0973 0.71 -2.3 1,004,696 + B158DRAFT_0973 0.71 -3.0 1,004,696 + B158DRAFT_0973 0.71 -3.3 1,004,696 + B158DRAFT_0973 0.71 -1.6 1,004,696 + B158DRAFT_0973 0.71 -1.5 1,004,696 + B158DRAFT_0973 0.71 -3.5 1,004,696 + B158DRAFT_0973 0.71 -1.2 1,004,701 + B158DRAFT_0973 0.72 -2.9 1,004,704 - B158DRAFT_0973 0.72 -3.5 1,004,704 - B158DRAFT_0973 0.72 -2.0 1,004,704 - B158DRAFT_0973 0.72 -3.0 1,004,704 - B158DRAFT_0973 0.72 -2.8 1,004,704 - B158DRAFT_0973 0.72 -2.5 1,004,704 - B158DRAFT_0973 0.72 -4.0 1,004,704 - B158DRAFT_0973 0.72 -1.3 1,004,704 - B158DRAFT_0973 0.72 -2.0 1,004,709 - B158DRAFT_0973 0.72 -2.8 1,004,717 - B158DRAFT_0973 0.73 -3.4 1,004,725 - B158DRAFT_0973 0.73 -2.9 1,004,729 - B158DRAFT_0973 0.74 -3.0 1,004,731 + B158DRAFT_0973 0.74 -1.7 1,004,739 - B158DRAFT_0973 0.74 -1.2 1,004,818 + B158DRAFT_0973 0.80 -2.2 1,004,840 + B158DRAFT_0973 0.82 -2.8 1,004,848 - B158DRAFT_0973 0.82 -2.3 1,004,886 + B158DRAFT_0973 0.85 -2.5 1,004,891 + B158DRAFT_0973 0.85 -2.3 1,004,935 - B158DRAFT_0973 0.89 -4.9 1,005,011 - -2.0 1,005,278 + B158DRAFT_0974 0.20 -0.0 1,005,278 - B158DRAFT_0974 0.20 -0.5 1,005,283 + B158DRAFT_0974 0.20 -1.6 1,005,283 + B158DRAFT_0974 0.20 -1.2 1,005,326 - B158DRAFT_0974 0.27 -1.2 1,005,326 - B158DRAFT_0974 0.27 -1.0 1,005,373 + B158DRAFT_0974 0.34 -2.2 1,005,453 - B158DRAFT_0974 0.46 -0.5 1,005,497 - B158DRAFT_0974 0.52 -0.6 1,005,497 - B158DRAFT_0974 0.52 -1.0 1,005,521 + B158DRAFT_0974 0.56 -1.3 1,005,531 - B158DRAFT_0974 0.57 -0.8 1,005,565 - B158DRAFT_0974 0.62 -0.5 1,005,593 + B158DRAFT_0974 0.67 -1.9 1,005,593 + B158DRAFT_0974 0.67 -3.4 1,005,594 - B158DRAFT_0974 0.67 -0.8 1,005,627 - B158DRAFT_0974 0.72 -0.8 1,005,629 + B158DRAFT_0974 0.72 -0.8 1,005,637 - B158DRAFT_0974 0.73 +0.0 1,005,637 - B158DRAFT_0974 0.73 -0.7 1,005,675 + B158DRAFT_0974 0.79 -0.5 1,005,675 + B158DRAFT_0974 0.79 -1.9 1,005,675 + B158DRAFT_0974 0.79 -2.3 1,005,675 + B158DRAFT_0974 0.79 -1.5 1,005,675 + B158DRAFT_0974 0.79 -2.0 1,005,675 + B158DRAFT_0974 0.79 -1.1 1,005,683 - B158DRAFT_0974 0.80 -0.5 1,005,694 - B158DRAFT_0974 0.82 -0.0 1,005,772 - -0.9 1,005,774 + -2.2 1,005,841 - -1.3 1,005,841 - -0.9 1,005,876 + -1.7 1,005,876 + -4.5 1,005,884 - -1.0 1,005,884 - -2.0 1,005,903 + -0.4 1,005,904 - -0.0 1,005,924 - -0.0 1,005,972 - +1.2 1,005,986 + -0.1 1,005,993 - +0.2 1,006,004 - -0.6
Or see this region's nucleotide sequence