Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0826 and B158DRAFT_0827 overlap by 14 nucleotides B158DRAFT_0827 and B158DRAFT_0828 are separated by 254 nucleotides B158DRAFT_0828 and B158DRAFT_0829 are separated by 3 nucleotides B158DRAFT_0829 and B158DRAFT_0830 are separated by 13 nucleotides
B158DRAFT_0826: B158DRAFT_0826 - drug resistance transporter, Bcr/CflA subfamily, at 837,950 to 839,134
_0826
B158DRAFT_0827: B158DRAFT_0827 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 839,121 to 839,726
_0827
B158DRAFT_0828: B158DRAFT_0828 - dihydroneopterin aldolase, at 839,981 to 840,334
_0828
B158DRAFT_0829: B158DRAFT_0829 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, at 840,338 to 840,835
_0829
B158DRAFT_0830: B158DRAFT_0830 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 840,849 to 841,565
_0830
Position (kb) 839
840
841 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 839.000 kb on + strand, within B158DRAFT_0826 at 839.000 kb on + strand, within B158DRAFT_0826 at 839.005 kb on + strand, within B158DRAFT_0826 at 839.005 kb on + strand, within B158DRAFT_0826 at 839.005 kb on + strand, within B158DRAFT_0826 at 839.005 kb on + strand, within B158DRAFT_0826 at 839.013 kb on - strand, within B158DRAFT_0826 at 839.020 kb on + strand at 839.020 kb on + strand at 839.028 kb on - strand at 839.043 kb on + strand at 839.043 kb on + strand at 839.043 kb on + strand at 839.051 kb on - strand at 839.060 kb on + strand at 839.076 kb on - strand at 839.076 kb on - strand at 839.087 kb on + strand at 839.088 kb on - strand at 839.299 kb on - strand, within B158DRAFT_0827 at 839.334 kb on - strand, within B158DRAFT_0827 at 839.356 kb on + strand, within B158DRAFT_0827 at 839.383 kb on - strand, within B158DRAFT_0827 at 839.408 kb on - strand, within B158DRAFT_0827 at 839.437 kb on + strand, within B158DRAFT_0827 at 839.437 kb on + strand, within B158DRAFT_0827 at 839.437 kb on + strand, within B158DRAFT_0827 at 839.437 kb on + strand, within B158DRAFT_0827 at 839.437 kb on + strand, within B158DRAFT_0827 at 839.445 kb on - strand, within B158DRAFT_0827 at 839.445 kb on - strand, within B158DRAFT_0827 at 839.445 kb on - strand, within B158DRAFT_0827 at 839.445 kb on - strand, within B158DRAFT_0827 at 839.499 kb on - strand, within B158DRAFT_0827 at 839.560 kb on - strand, within B158DRAFT_0827 at 839.586 kb on + strand, within B158DRAFT_0827 at 839.608 kb on - strand, within B158DRAFT_0827 at 839.608 kb on - strand, within B158DRAFT_0827 at 839.686 kb on + strand at 839.686 kb on + strand at 839.694 kb on - strand at 839.733 kb on + strand at 839.733 kb on + strand at 839.733 kb on + strand at 839.740 kb on - strand at 839.741 kb on - strand at 839.767 kb on - strand at 839.769 kb on + strand at 839.777 kb on - strand at 839.781 kb on - strand at 839.781 kb on - strand at 839.792 kb on - strand at 839.812 kb on + strand at 839.885 kb on + strand at 839.885 kb on + strand at 839.938 kb on + strand at 840.383 kb on + strand at 840.496 kb on + strand, within B158DRAFT_0829 at 840.504 kb on - strand, within B158DRAFT_0829 at 840.544 kb on + strand, within B158DRAFT_0829 at 840.653 kb on + strand, within B158DRAFT_0829 at 840.672 kb on + strand, within B158DRAFT_0829 at 840.683 kb on + strand, within B158DRAFT_0829 at 840.683 kb on + strand, within B158DRAFT_0829 at 840.690 kb on + strand, within B158DRAFT_0829 at 840.690 kb on + strand, within B158DRAFT_0829 at 840.698 kb on - strand, within B158DRAFT_0829 at 840.698 kb on - strand, within B158DRAFT_0829 at 840.698 kb on - strand, within B158DRAFT_0829 at 840.820 kb on - strand at 840.910 kb on + strand at 840.910 kb on + strand at 840.910 kb on + strand at 840.917 kb on - strand at 840.918 kb on - strand at 840.918 kb on - strand at 840.918 kb on - strand at 840.918 kb on - strand at 840.918 kb on - strand at 840.918 kb on - strand at 840.929 kb on + strand, within B158DRAFT_0830 at 840.930 kb on + strand, within B158DRAFT_0830 at 841.037 kb on + strand, within B158DRAFT_0830 at 841.051 kb on + strand, within B158DRAFT_0830 at 841.054 kb on + strand, within B158DRAFT_0830 at 841.067 kb on + strand, within B158DRAFT_0830 at 841.075 kb on - strand, within B158DRAFT_0830 at 841.080 kb on + strand, within B158DRAFT_0830 at 841.083 kb on - strand, within B158DRAFT_0830 at 841.231 kb on - strand, within B158DRAFT_0830 at 841.254 kb on + strand, within B158DRAFT_0830 at 841.292 kb on + strand, within B158DRAFT_0830 at 841.296 kb on - strand, within B158DRAFT_0830 at 841.298 kb on - strand, within B158DRAFT_0830
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 839,000 + B158DRAFT_0826 0.89 -0.1 839,000 + B158DRAFT_0826 0.89 -0.2 839,005 + B158DRAFT_0826 0.89 -0.2 839,005 + B158DRAFT_0826 0.89 -0.2 839,005 + B158DRAFT_0826 0.89 -1.5 839,005 + B158DRAFT_0826 0.89 +0.1 839,013 - B158DRAFT_0826 0.90 -0.6 839,020 + -0.3 839,020 + +0.6 839,028 - +0.5 839,043 + +0.6 839,043 + -0.3 839,043 + +0.1 839,051 - -0.0 839,060 + +0.6 839,076 - -1.2 839,076 - +0.2 839,087 + +0.4 839,088 - +0.1 839,299 - B158DRAFT_0827 0.29 -1.2 839,334 - B158DRAFT_0827 0.35 -0.8 839,356 + B158DRAFT_0827 0.39 -0.0 839,383 - B158DRAFT_0827 0.43 +0.0 839,408 - B158DRAFT_0827 0.47 -0.5 839,437 + B158DRAFT_0827 0.52 -0.4 839,437 + B158DRAFT_0827 0.52 -0.6 839,437 + B158DRAFT_0827 0.52 -0.4 839,437 + B158DRAFT_0827 0.52 -0.2 839,437 + B158DRAFT_0827 0.52 -0.4 839,445 - B158DRAFT_0827 0.53 +0.8 839,445 - B158DRAFT_0827 0.53 -2.4 839,445 - B158DRAFT_0827 0.53 -0.9 839,445 - B158DRAFT_0827 0.53 -0.9 839,499 - B158DRAFT_0827 0.62 -0.2 839,560 - B158DRAFT_0827 0.72 -1.0 839,586 + B158DRAFT_0827 0.77 -1.1 839,608 - B158DRAFT_0827 0.80 -0.3 839,608 - B158DRAFT_0827 0.80 +0.0 839,686 + -0.8 839,686 + -0.3 839,694 - -0.9 839,733 + -0.5 839,733 + -0.6 839,733 + -0.9 839,740 - +0.2 839,741 - -0.2 839,767 - -0.8 839,769 + -1.0 839,777 - -0.2 839,781 - +0.3 839,781 - -0.3 839,792 - -0.3 839,812 + -0.3 839,885 + -0.5 839,885 + -0.6 839,938 + +0.1 840,383 + +0.1 840,496 + B158DRAFT_0829 0.32 +2.8 840,504 - B158DRAFT_0829 0.33 -0.2 840,544 + B158DRAFT_0829 0.41 -1.3 840,653 + B158DRAFT_0829 0.63 -0.6 840,672 + B158DRAFT_0829 0.67 -1.9 840,683 + B158DRAFT_0829 0.69 -0.1 840,683 + B158DRAFT_0829 0.69 -0.1 840,690 + B158DRAFT_0829 0.71 -0.2 840,690 + B158DRAFT_0829 0.71 -0.3 840,698 - B158DRAFT_0829 0.72 +0.1 840,698 - B158DRAFT_0829 0.72 +0.5 840,698 - B158DRAFT_0829 0.72 -0.4 840,820 - -0.1 840,910 + -0.1 840,910 + +0.2 840,910 + -0.5 840,917 - +0.3 840,918 - -0.2 840,918 - +0.2 840,918 - +0.7 840,918 - +0.3 840,918 - +0.2 840,918 - +0.3 840,929 + B158DRAFT_0830 0.11 +0.0 840,930 + B158DRAFT_0830 0.11 -0.2 841,037 + B158DRAFT_0830 0.26 +0.6 841,051 + B158DRAFT_0830 0.28 +0.2 841,054 + B158DRAFT_0830 0.29 +0.1 841,067 + B158DRAFT_0830 0.30 -0.4 841,075 - B158DRAFT_0830 0.32 +0.7 841,080 + B158DRAFT_0830 0.32 +0.1 841,083 - B158DRAFT_0830 0.33 +0.7 841,231 - B158DRAFT_0830 0.53 +0.4 841,254 + B158DRAFT_0830 0.56 +0.1 841,292 + B158DRAFT_0830 0.62 -1.2 841,296 - B158DRAFT_0830 0.62 +0.5 841,298 - B158DRAFT_0830 0.63 +0.1
Or see this region's nucleotide sequence