Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0694 and B158DRAFT_0695 overlap by 1 nucleotides B158DRAFT_0695 and B158DRAFT_0696 overlap by 1 nucleotides B158DRAFT_0696 and B158DRAFT_0697 are separated by 2 nucleotides
B158DRAFT_0694: B158DRAFT_0694 - general secretion pathway protein I, at 696,245 to 696,625
_0694
B158DRAFT_0695: B158DRAFT_0695 - general secretion pathway protein J, at 696,625 to 697,329
_0695
B158DRAFT_0696: B158DRAFT_0696 - Type II secretory pathway, component PulK, at 697,329 to 698,414
_0696
B158DRAFT_0697: B158DRAFT_0697 - Type II secretory pathway, component PulL, at 698,417 to 699,652
_0697
Position (kb) 697
698
699 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 696.520 kb on - strand, within B158DRAFT_0694 at 696.572 kb on + strand, within B158DRAFT_0694 at 696.786 kb on + strand, within B158DRAFT_0695 at 697.253 kb on + strand, within B158DRAFT_0695 at 697.280 kb on + strand at 697.280 kb on + strand at 697.345 kb on + strand at 697.428 kb on + strand at 697.428 kb on + strand at 697.436 kb on - strand at 697.504 kb on + strand, within B158DRAFT_0696 at 697.533 kb on + strand, within B158DRAFT_0696 at 697.806 kb on + strand, within B158DRAFT_0696 at 697.844 kb on + strand, within B158DRAFT_0696 at 697.850 kb on + strand, within B158DRAFT_0696 at 697.891 kb on - strand, within B158DRAFT_0696 at 697.930 kb on - strand, within B158DRAFT_0696 at 697.973 kb on + strand, within B158DRAFT_0696 at 697.981 kb on - strand, within B158DRAFT_0696 at 698.039 kb on + strand, within B158DRAFT_0696 at 698.052 kb on + strand, within B158DRAFT_0696 at 698.060 kb on - strand, within B158DRAFT_0696 at 698.179 kb on + strand, within B158DRAFT_0696 at 698.337 kb on + strand at 698.349 kb on + strand at 698.483 kb on + strand at 698.605 kb on - strand, within B158DRAFT_0697 at 698.615 kb on - strand, within B158DRAFT_0697 at 698.675 kb on - strand, within B158DRAFT_0697 at 698.707 kb on + strand, within B158DRAFT_0697 at 698.827 kb on + strand, within B158DRAFT_0697 at 698.878 kb on - strand, within B158DRAFT_0697 at 699.136 kb on - strand, within B158DRAFT_0697 at 699.351 kb on + strand, within B158DRAFT_0697
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 696,520 - B158DRAFT_0694 0.72 -1.4 696,572 + B158DRAFT_0694 0.86 +0.2 696,786 + B158DRAFT_0695 0.23 -0.4 697,253 + B158DRAFT_0695 0.89 -0.7 697,280 + -0.1 697,280 + +0.4 697,345 + -2.7 697,428 + +0.2 697,428 + -0.6 697,436 - -1.4 697,504 + B158DRAFT_0696 0.16 -2.2 697,533 + B158DRAFT_0696 0.19 -0.4 697,806 + B158DRAFT_0696 0.44 -1.1 697,844 + B158DRAFT_0696 0.47 -1.8 697,850 + B158DRAFT_0696 0.48 -2.6 697,891 - B158DRAFT_0696 0.52 -2.5 697,930 - B158DRAFT_0696 0.55 -2.8 697,973 + B158DRAFT_0696 0.59 -0.8 697,981 - B158DRAFT_0696 0.60 -1.5 698,039 + B158DRAFT_0696 0.65 -1.6 698,052 + B158DRAFT_0696 0.67 -0.4 698,060 - B158DRAFT_0696 0.67 +1.2 698,179 + B158DRAFT_0696 0.78 -2.2 698,337 + -2.3 698,349 + -0.2 698,483 + -3.7 698,605 - B158DRAFT_0697 0.15 -1.1 698,615 - B158DRAFT_0697 0.16 -1.9 698,675 - B158DRAFT_0697 0.21 -1.8 698,707 + B158DRAFT_0697 0.23 -0.1 698,827 + B158DRAFT_0697 0.33 +0.6 698,878 - B158DRAFT_0697 0.37 -1.4 699,136 - B158DRAFT_0697 0.58 -0.4 699,351 + B158DRAFT_0697 0.76 +0.2
Or see this region's nucleotide sequence