Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0224

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0222 and B158DRAFT_0223 are separated by 27 nucleotidesB158DRAFT_0223 and B158DRAFT_0224 are separated by 194 nucleotidesB158DRAFT_0224 and B158DRAFT_0225 are separated by 168 nucleotides B158DRAFT_0222: B158DRAFT_0222 - hypothetical protein, at 226,737 to 227,027 _0222 B158DRAFT_0223: B158DRAFT_0223 - hypothetical protein, at 227,055 to 227,690 _0223 B158DRAFT_0224: B158DRAFT_0224 - Regulator of competence-specific genes, at 227,885 to 228,229 _0224 B158DRAFT_0225: B158DRAFT_0225 - Beta-lactamase class C and other penicillin binding proteins, at 228,398 to 230,053 _0225 Position (kb) 227 228 229Strain fitness (log2 ratio) -1 0 1at 226.964 kb on + strand, within B158DRAFT_0222at 226.990 kb on - strand, within B158DRAFT_0222at 227.002 kb on - strandat 227.060 kb on + strandat 227.088 kb on - strandat 227.228 kb on - strand, within B158DRAFT_0223at 227.228 kb on - strand, within B158DRAFT_0223at 227.250 kb on + strand, within B158DRAFT_0223at 227.338 kb on - strand, within B158DRAFT_0223at 227.338 kb on - strand, within B158DRAFT_0223at 227.427 kb on + strand, within B158DRAFT_0223at 227.428 kb on + strand, within B158DRAFT_0223at 227.611 kb on + strand, within B158DRAFT_0223at 227.613 kb on + strand, within B158DRAFT_0223at 227.613 kb on + strand, within B158DRAFT_0223at 227.613 kb on + strand, within B158DRAFT_0223at 227.613 kb on + strand, within B158DRAFT_0223at 227.613 kb on + strand, within B158DRAFT_0223at 227.613 kb on + strand, within B158DRAFT_0223at 227.619 kb on - strand, within B158DRAFT_0223at 227.619 kb on - strand, within B158DRAFT_0223at 227.621 kb on - strand, within B158DRAFT_0223at 227.621 kb on - strand, within B158DRAFT_0223at 227.621 kb on - strand, within B158DRAFT_0223at 227.621 kb on - strand, within B158DRAFT_0223at 227.621 kb on - strand, within B158DRAFT_0223at 227.621 kb on - strand, within B158DRAFT_0223at 227.714 kb on - strandat 227.737 kb on + strandat 227.788 kb on + strandat 227.796 kb on - strandat 227.814 kb on + strandat 227.941 kb on + strand, within B158DRAFT_0224at 228.019 kb on - strand, within B158DRAFT_0224at 228.020 kb on - strand, within B158DRAFT_0224at 228.020 kb on - strand, within B158DRAFT_0224at 228.037 kb on - strand, within B158DRAFT_0224at 228.117 kb on + strand, within B158DRAFT_0224at 228.117 kb on + strand, within B158DRAFT_0224at 228.125 kb on - strand, within B158DRAFT_0224at 228.125 kb on - strand, within B158DRAFT_0224at 228.147 kb on + strand, within B158DRAFT_0224at 228.382 kb on + strandat 228.433 kb on + strandat 228.435 kb on + strandat 228.545 kb on + strandat 228.591 kb on + strand, within B158DRAFT_0225at 228.607 kb on - strand, within B158DRAFT_0225at 228.614 kb on - strand, within B158DRAFT_0225at 228.629 kb on + strand, within B158DRAFT_0225at 228.629 kb on + strand, within B158DRAFT_0225at 228.689 kb on + strand, within B158DRAFT_0225at 228.690 kb on + strand, within B158DRAFT_0225at 228.690 kb on + strand, within B158DRAFT_0225at 228.690 kb on + strand, within B158DRAFT_0225at 228.690 kb on + strand, within B158DRAFT_0225at 228.690 kb on + strand, within B158DRAFT_0225at 228.690 kb on + strand, within B158DRAFT_0225at 228.697 kb on - strand, within B158DRAFT_0225at 228.698 kb on - strand, within B158DRAFT_0225at 228.822 kb on - strand, within B158DRAFT_0225at 228.828 kb on + strand, within B158DRAFT_0225at 228.836 kb on - strand, within B158DRAFT_0225at 228.836 kb on - strand, within B158DRAFT_0225at 228.836 kb on - strand, within B158DRAFT_0225at 228.856 kb on + strand, within B158DRAFT_0225at 228.856 kb on + strand, within B158DRAFT_0225at 228.864 kb on - strand, within B158DRAFT_0225at 228.913 kb on + strand, within B158DRAFT_0225at 228.926 kb on + strand, within B158DRAFT_0225at 228.934 kb on + strand, within B158DRAFT_0225at 228.934 kb on + strand, within B158DRAFT_0225at 228.934 kb on + strand, within B158DRAFT_0225at 228.942 kb on - strand, within B158DRAFT_0225at 228.942 kb on - strand, within B158DRAFT_0225at 228.944 kb on + strand, within B158DRAFT_0225at 229.008 kb on + strand, within B158DRAFT_0225at 229.013 kb on + strand, within B158DRAFT_0225at 229.018 kb on + strand, within B158DRAFT_0225at 229.018 kb on + strand, within B158DRAFT_0225at 229.020 kb on + strand, within B158DRAFT_0225at 229.048 kb on - strand, within B158DRAFT_0225at 229.067 kb on - strand, within B158DRAFT_0225at 229.074 kb on + strand, within B158DRAFT_0225at 229.074 kb on + strand, within B158DRAFT_0225at 229.074 kb on + strand, within B158DRAFT_0225at 229.082 kb on - strand, within B158DRAFT_0225at 229.149 kb on + strand, within B158DRAFT_0225at 229.181 kb on + strand, within B158DRAFT_0225

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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226,964 + B158DRAFT_0222 0.78 -0.2
226,990 - B158DRAFT_0222 0.87 -0.9
227,002 - -0.1
227,060 + -0.1
227,088 - -0.5
227,228 - B158DRAFT_0223 0.27 -0.1
227,228 - B158DRAFT_0223 0.27 +0.4
227,250 + B158DRAFT_0223 0.31 -0.6
227,338 - B158DRAFT_0223 0.44 +0.1
227,338 - B158DRAFT_0223 0.44 +1.0
227,427 + B158DRAFT_0223 0.58 +0.3
227,428 + B158DRAFT_0223 0.59 -0.3
227,611 + B158DRAFT_0223 0.87 -0.3
227,613 + B158DRAFT_0223 0.88 +0.5
227,613 + B158DRAFT_0223 0.88 -0.7
227,613 + B158DRAFT_0223 0.88 +0.1
227,613 + B158DRAFT_0223 0.88 -1.4
227,613 + B158DRAFT_0223 0.88 -0.7
227,613 + B158DRAFT_0223 0.88 -0.0
227,619 - B158DRAFT_0223 0.89 -0.5
227,619 - B158DRAFT_0223 0.89 +0.1
227,621 - B158DRAFT_0223 0.89 -0.5
227,621 - B158DRAFT_0223 0.89 +0.0
227,621 - B158DRAFT_0223 0.89 -0.1
227,621 - B158DRAFT_0223 0.89 -0.0
227,621 - B158DRAFT_0223 0.89 +0.4
227,621 - B158DRAFT_0223 0.89 +0.2
227,714 - -0.1
227,737 + -0.6
227,788 + +0.1
227,796 - +0.1
227,814 + -0.3
227,941 + B158DRAFT_0224 0.16 -0.1
228,019 - B158DRAFT_0224 0.39 -0.1
228,020 - B158DRAFT_0224 0.39 -0.6
228,020 - B158DRAFT_0224 0.39 -0.7
228,037 - B158DRAFT_0224 0.44 -0.7
228,117 + B158DRAFT_0224 0.67 -0.4
228,117 + B158DRAFT_0224 0.67 -0.3
228,125 - B158DRAFT_0224 0.70 -0.6
228,125 - B158DRAFT_0224 0.70 -0.2
228,147 + B158DRAFT_0224 0.76 -0.0
228,382 + -0.3
228,433 + +0.2
228,435 + -0.1
228,545 + -0.5
228,591 + B158DRAFT_0225 0.12 -0.4
228,607 - B158DRAFT_0225 0.13 +0.5
228,614 - B158DRAFT_0225 0.13 -0.2
228,629 + B158DRAFT_0225 0.14 -0.1
228,629 + B158DRAFT_0225 0.14 -0.1
228,689 + B158DRAFT_0225 0.18 -0.5
228,690 + B158DRAFT_0225 0.18 +0.4
228,690 + B158DRAFT_0225 0.18 +0.3
228,690 + B158DRAFT_0225 0.18 -0.1
228,690 + B158DRAFT_0225 0.18 -0.1
228,690 + B158DRAFT_0225 0.18 +0.2
228,690 + B158DRAFT_0225 0.18 -0.0
228,697 - B158DRAFT_0225 0.18 +0.1
228,698 - B158DRAFT_0225 0.18 -0.2
228,822 - B158DRAFT_0225 0.26 -0.4
228,828 + B158DRAFT_0225 0.26 +0.2
228,836 - B158DRAFT_0225 0.26 +0.7
228,836 - B158DRAFT_0225 0.26 -0.4
228,836 - B158DRAFT_0225 0.26 +0.1
228,856 + B158DRAFT_0225 0.28 +1.4
228,856 + B158DRAFT_0225 0.28 +0.4
228,864 - B158DRAFT_0225 0.28 +0.2
228,913 + B158DRAFT_0225 0.31 +0.7
228,926 + B158DRAFT_0225 0.32 -0.2
228,934 + B158DRAFT_0225 0.32 +0.4
228,934 + B158DRAFT_0225 0.32 -0.2
228,934 + B158DRAFT_0225 0.32 -0.3
228,942 - B158DRAFT_0225 0.33 -0.1
228,942 - B158DRAFT_0225 0.33 -0.3
228,944 + B158DRAFT_0225 0.33 -0.1
229,008 + B158DRAFT_0225 0.37 +0.4
229,013 + B158DRAFT_0225 0.37 -0.1
229,018 + B158DRAFT_0225 0.37 +0.1
229,018 + B158DRAFT_0225 0.37 -0.2
229,020 + B158DRAFT_0225 0.38 -0.1
229,048 - B158DRAFT_0225 0.39 -0.5
229,067 - B158DRAFT_0225 0.40 -0.4
229,074 + B158DRAFT_0225 0.41 +0.2
229,074 + B158DRAFT_0225 0.41 -0.3
229,074 + B158DRAFT_0225 0.41 +0.2
229,082 - B158DRAFT_0225 0.41 -0.1
229,149 + B158DRAFT_0225 0.45 +0.1
229,181 + B158DRAFT_0225 0.47 +0.1

Or see this region's nucleotide sequence