Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0164 and B158DRAFT_0165 overlap by 4 nucleotides B158DRAFT_0165 and B158DRAFT_0166 are separated by 62 nucleotides
B158DRAFT_0164: B158DRAFT_0164 - tRNA-U20-dihydrouridine synthase, at 161,256 to 162,236
_0164
B158DRAFT_0165: B158DRAFT_0165 - Factor for inversion stimulation Fis, transcriptional activator, at 162,233 to 162,538
_0165
B158DRAFT_0166: B158DRAFT_0166 - IMP cyclohydrolase (EC 3.5.4.10)/phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3), at 162,601 to 164,166
_0166
Position (kb) 162
163 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 161.261 kb on + strand at 161.358 kb on + strand, within B158DRAFT_0164 at 161.358 kb on + strand, within B158DRAFT_0164 at 161.460 kb on + strand, within B158DRAFT_0164 at 161.492 kb on + strand, within B158DRAFT_0164 at 161.492 kb on + strand, within B158DRAFT_0164 at 161.605 kb on + strand, within B158DRAFT_0164 at 161.655 kb on + strand, within B158DRAFT_0164 at 161.655 kb on + strand, within B158DRAFT_0164 at 161.699 kb on + strand, within B158DRAFT_0164 at 161.699 kb on + strand, within B158DRAFT_0164 at 161.699 kb on + strand, within B158DRAFT_0164 at 161.699 kb on + strand, within B158DRAFT_0164 at 161.859 kb on + strand, within B158DRAFT_0164 at 161.894 kb on + strand, within B158DRAFT_0164 at 161.939 kb on + strand, within B158DRAFT_0164 at 161.939 kb on + strand, within B158DRAFT_0164 at 161.939 kb on + strand, within B158DRAFT_0164 at 161.939 kb on + strand, within B158DRAFT_0164 at 161.939 kb on + strand, within B158DRAFT_0164 at 161.939 kb on + strand, within B158DRAFT_0164 at 161.939 kb on + strand, within B158DRAFT_0164 at 161.939 kb on + strand, within B158DRAFT_0164 at 161.939 kb on + strand, within B158DRAFT_0164 at 162.010 kb on + strand, within B158DRAFT_0164 at 162.172 kb on + strand at 162.221 kb on + strand at 162.533 kb on + strand at 162.551 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 161,261 + -2.1 161,358 + B158DRAFT_0164 0.10 -1.9 161,358 + B158DRAFT_0164 0.10 -3.3 161,460 + B158DRAFT_0164 0.21 -1.4 161,492 + B158DRAFT_0164 0.24 -1.0 161,492 + B158DRAFT_0164 0.24 -2.0 161,605 + B158DRAFT_0164 0.36 -2.6 161,655 + B158DRAFT_0164 0.41 -1.1 161,655 + B158DRAFT_0164 0.41 -1.1 161,699 + B158DRAFT_0164 0.45 -2.1 161,699 + B158DRAFT_0164 0.45 -3.2 161,699 + B158DRAFT_0164 0.45 -1.5 161,699 + B158DRAFT_0164 0.45 -2.4 161,859 + B158DRAFT_0164 0.61 -3.5 161,894 + B158DRAFT_0164 0.65 -1.9 161,939 + B158DRAFT_0164 0.70 -1.9 161,939 + B158DRAFT_0164 0.70 -1.5 161,939 + B158DRAFT_0164 0.70 -1.8 161,939 + B158DRAFT_0164 0.70 -3.6 161,939 + B158DRAFT_0164 0.70 -2.1 161,939 + B158DRAFT_0164 0.70 -1.9 161,939 + B158DRAFT_0164 0.70 -2.0 161,939 + B158DRAFT_0164 0.70 -1.0 161,939 + B158DRAFT_0164 0.70 -0.8 162,010 + B158DRAFT_0164 0.77 -3.6 162,172 + -2.0 162,221 + -2.0 162,533 + -2.4 162,551 + -3.6
Or see this region's nucleotide sequence