Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2390

Experiment: m.b. Polymyxin B sulfate 0.0019531 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2388 and B158DRAFT_2389 are separated by 45 nucleotidesB158DRAFT_2389 and B158DRAFT_2390 are separated by 17 nucleotidesB158DRAFT_2390 and B158DRAFT_2391 are separated by 3 nucleotidesB158DRAFT_2391 and B158DRAFT_2392 are separated by 139 nucleotides B158DRAFT_2388: B158DRAFT_2388 - Uncharacterized protein conserved in bacteria, at 558,155 to 559,219 _2388 B158DRAFT_2389: B158DRAFT_2389 - Phosphatidylglycerophosphate synthase, at 559,265 to 559,870 _2389 B158DRAFT_2390: B158DRAFT_2390 - regulatory inactivation of DnaA Hda protein, at 559,888 to 560,577 _2390 B158DRAFT_2391: B158DRAFT_2391 - alkylhydroperoxidase AhpD family core domain, at 560,581 to 560,937 _2391 B158DRAFT_2392: B158DRAFT_2392 - Uncharacterized low-complexity proteins, at 561,077 to 562,828 _2392 Position (kb) 559 560 561Strain fitness (log2 ratio) -2 -1 0 1 2at 559.106 kb on - strand, within B158DRAFT_2388at 559.106 kb on - strand, within B158DRAFT_2388at 559.389 kb on + strand, within B158DRAFT_2389at 559.390 kb on + strand, within B158DRAFT_2389at 559.392 kb on + strand, within B158DRAFT_2389at 559.459 kb on + strand, within B158DRAFT_2389at 559.459 kb on + strand, within B158DRAFT_2389at 559.588 kb on + strand, within B158DRAFT_2389at 559.613 kb on + strand, within B158DRAFT_2389at 559.742 kb on + strand, within B158DRAFT_2389at 559.834 kb on + strandat 559.834 kb on + strandat 559.834 kb on + strandat 559.834 kb on + strandat 559.834 kb on + strandat 559.834 kb on + strandat 559.839 kb on + strandat 559.839 kb on + strandat 559.848 kb on + strandat 560.610 kb on + strandat 560.667 kb on + strand, within B158DRAFT_2391at 560.694 kb on + strand, within B158DRAFT_2391at 560.705 kb on + strand, within B158DRAFT_2391at 560.708 kb on - strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.715 kb on + strand, within B158DRAFT_2391at 560.723 kb on - strand, within B158DRAFT_2391at 560.727 kb on + strand, within B158DRAFT_2391at 560.735 kb on - strand, within B158DRAFT_2391at 560.735 kb on - strand, within B158DRAFT_2391at 560.735 kb on - strand, within B158DRAFT_2391at 560.735 kb on - strand, within B158DRAFT_2391at 560.748 kb on + strand, within B158DRAFT_2391at 560.756 kb on - strand, within B158DRAFT_2391at 560.758 kb on + strand, within B158DRAFT_2391at 560.790 kb on + strand, within B158DRAFT_2391at 560.952 kb on + strandat 560.952 kb on - strandat 560.952 kb on - strandat 560.972 kb on - strandat 560.982 kb on + strandat 560.989 kb on - strandat 561.087 kb on + strandat 561.087 kb on + strandat 561.095 kb on - strandat 561.204 kb on + strandat 561.204 kb on + strandat 561.204 kb on + strandat 561.204 kb on + strandat 561.212 kb on - strandat 561.212 kb on - strandat 561.212 kb on - strandat 561.212 kb on - strandat 561.219 kb on + strandat 561.219 kb on + strandat 561.219 kb on + strandat 561.222 kb on - strandat 561.222 kb on - strandat 561.226 kb on - strandat 561.227 kb on - strandat 561.279 kb on + strand, within B158DRAFT_2392at 561.287 kb on - strand, within B158DRAFT_2392at 561.374 kb on + strand, within B158DRAFT_2392at 561.382 kb on - strand, within B158DRAFT_2392at 561.444 kb on + strand, within B158DRAFT_2392at 561.459 kb on + strand, within B158DRAFT_2392at 561.478 kb on + strand, within B158DRAFT_2392at 561.478 kb on + strand, within B158DRAFT_2392at 561.486 kb on - strand, within B158DRAFT_2392at 561.534 kb on + strand, within B158DRAFT_2392

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0019531 mg/ml
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559,106 - B158DRAFT_2388 0.89 -1.3
559,106 - B158DRAFT_2388 0.89 -1.0
559,389 + B158DRAFT_2389 0.20 +0.3
559,390 + B158DRAFT_2389 0.21 +0.0
559,392 + B158DRAFT_2389 0.21 +0.1
559,459 + B158DRAFT_2389 0.32 +0.6
559,459 + B158DRAFT_2389 0.32 -0.3
559,588 + B158DRAFT_2389 0.53 -0.2
559,613 + B158DRAFT_2389 0.57 -0.1
559,742 + B158DRAFT_2389 0.79 -0.6
559,834 + +0.5
559,834 + -1.0
559,834 + -1.2
559,834 + -0.9
559,834 + -0.2
559,834 + -0.8
559,839 + -1.5
559,839 + -0.7
559,848 + -0.9
560,610 + +0.1
560,667 + B158DRAFT_2391 0.24 -0.5
560,694 + B158DRAFT_2391 0.32 +0.1
560,705 + B158DRAFT_2391 0.35 -0.4
560,708 - B158DRAFT_2391 0.36 -0.1
560,715 + B158DRAFT_2391 0.38 -0.1
560,715 + B158DRAFT_2391 0.38 -0.3
560,715 + B158DRAFT_2391 0.38 -0.3
560,715 + B158DRAFT_2391 0.38 -0.2
560,715 + B158DRAFT_2391 0.38 -0.7
560,715 + B158DRAFT_2391 0.38 -0.4
560,715 + B158DRAFT_2391 0.38 -0.5
560,715 + B158DRAFT_2391 0.38 -0.4
560,723 - B158DRAFT_2391 0.40 -0.1
560,727 + B158DRAFT_2391 0.41 -0.6
560,735 - B158DRAFT_2391 0.43 +0.3
560,735 - B158DRAFT_2391 0.43 -0.5
560,735 - B158DRAFT_2391 0.43 -0.1
560,735 - B158DRAFT_2391 0.43 -0.7
560,748 + B158DRAFT_2391 0.47 -2.4
560,756 - B158DRAFT_2391 0.49 +2.5
560,758 + B158DRAFT_2391 0.50 +0.0
560,790 + B158DRAFT_2391 0.59 -0.3
560,952 + +0.6
560,952 - -0.8
560,952 - -0.4
560,972 - -0.4
560,982 + -0.1
560,989 - -0.1
561,087 + +0.4
561,087 + +0.3
561,095 - +0.1
561,204 + -0.1
561,204 + +0.2
561,204 + -0.3
561,204 + +0.5
561,212 - -1.0
561,212 - +0.3
561,212 - +0.2
561,212 - +0.2
561,219 + +0.4
561,219 + +0.1
561,219 + +0.0
561,222 - -0.2
561,222 - +0.4
561,226 - +0.1
561,227 - -0.3
561,279 + B158DRAFT_2392 0.12 +1.1
561,287 - B158DRAFT_2392 0.12 -0.0
561,374 + B158DRAFT_2392 0.17 +0.6
561,382 - B158DRAFT_2392 0.17 +0.2
561,444 + B158DRAFT_2392 0.21 -0.1
561,459 + B158DRAFT_2392 0.22 +0.0
561,478 + B158DRAFT_2392 0.23 -0.3
561,478 + B158DRAFT_2392 0.23 +0.1
561,486 - B158DRAFT_2392 0.23 +0.5
561,534 + B158DRAFT_2392 0.26 +0.0

Or see this region's nucleotide sequence