Experiment: m.b. Polymyxin B sulfate 0.0019531 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1192 and B158DRAFT_1193 are separated by 3 nucleotides B158DRAFT_1193 and B158DRAFT_1194 are separated by 122 nucleotides B158DRAFT_1194 and B158DRAFT_1195 are separated by 18 nucleotides
B158DRAFT_1192: B158DRAFT_1192 - DNA recombination-dependent growth factor C, at 1,231,409 to 1,232,377
_1192
B158DRAFT_1193: B158DRAFT_1193 - hypothetical protein, at 1,232,381 to 1,233,805
_1193
B158DRAFT_1194: B158DRAFT_1194 - hypothetical protein, at 1,233,928 to 1,234,545
_1194
B158DRAFT_1195: B158DRAFT_1195 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase, at 1,234,564 to 1,235,463
_1195
Position (kb)
1232
1233
1234 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1231.398 kb on - strand at 1231.398 kb on - strand at 1231.400 kb on + strand at 1231.400 kb on + strand at 1231.400 kb on + strand at 1231.400 kb on + strand at 1231.400 kb on + strand at 1231.408 kb on - strand at 1231.408 kb on - strand at 1231.408 kb on - strand at 1231.408 kb on - strand at 1231.408 kb on - strand at 1231.408 kb on - strand at 1231.466 kb on + strand at 1231.501 kb on + strand at 1231.509 kb on - strand, within B158DRAFT_1192 at 1231.509 kb on - strand, within B158DRAFT_1192 at 1231.509 kb on - strand, within B158DRAFT_1192 at 1231.512 kb on - strand, within B158DRAFT_1192 at 1231.522 kb on - strand, within B158DRAFT_1192 at 1231.522 kb on - strand, within B158DRAFT_1192 at 1231.524 kb on + strand, within B158DRAFT_1192 at 1231.524 kb on + strand, within B158DRAFT_1192 at 1231.524 kb on + strand, within B158DRAFT_1192 at 1231.524 kb on + strand, within B158DRAFT_1192 at 1231.524 kb on + strand, within B158DRAFT_1192 at 1231.532 kb on - strand, within B158DRAFT_1192 at 1231.532 kb on - strand, within B158DRAFT_1192 at 1231.534 kb on - strand, within B158DRAFT_1192 at 1231.534 kb on - strand, within B158DRAFT_1192 at 1231.582 kb on + strand, within B158DRAFT_1192 at 1231.593 kb on + strand, within B158DRAFT_1192 at 1231.601 kb on - strand, within B158DRAFT_1192 at 1231.631 kb on + strand, within B158DRAFT_1192 at 1231.639 kb on - strand, within B158DRAFT_1192 at 1231.639 kb on - strand, within B158DRAFT_1192 at 1231.654 kb on - strand, within B158DRAFT_1192 at 1231.654 kb on - strand, within B158DRAFT_1192 at 1231.658 kb on + strand, within B158DRAFT_1192 at 1231.658 kb on + strand, within B158DRAFT_1192 at 1231.666 kb on - strand, within B158DRAFT_1192 at 1231.716 kb on + strand, within B158DRAFT_1192 at 1231.716 kb on + strand, within B158DRAFT_1192 at 1231.724 kb on - strand, within B158DRAFT_1192 at 1231.724 kb on - strand, within B158DRAFT_1192 at 1231.744 kb on + strand, within B158DRAFT_1192 at 1231.744 kb on + strand, within B158DRAFT_1192 at 1231.763 kb on + strand, within B158DRAFT_1192 at 1231.774 kb on + strand, within B158DRAFT_1192 at 1231.787 kb on - strand, within B158DRAFT_1192 at 1231.807 kb on - strand, within B158DRAFT_1192 at 1231.810 kb on + strand, within B158DRAFT_1192 at 1231.816 kb on + strand, within B158DRAFT_1192 at 1231.831 kb on - strand, within B158DRAFT_1192 at 1231.833 kb on + strand, within B158DRAFT_1192 at 1231.852 kb on - strand, within B158DRAFT_1192 at 1231.863 kb on - strand, within B158DRAFT_1192 at 1231.892 kb on + strand, within B158DRAFT_1192 at 1231.914 kb on + strand, within B158DRAFT_1192 at 1231.914 kb on + strand, within B158DRAFT_1192 at 1231.914 kb on + strand, within B158DRAFT_1192 at 1231.922 kb on - strand, within B158DRAFT_1192 at 1231.922 kb on - strand, within B158DRAFT_1192 at 1231.938 kb on - strand, within B158DRAFT_1192 at 1231.961 kb on + strand, within B158DRAFT_1192 at 1231.970 kb on + strand, within B158DRAFT_1192 at 1231.978 kb on - strand, within B158DRAFT_1192 at 1231.983 kb on - strand, within B158DRAFT_1192 at 1231.999 kb on - strand, within B158DRAFT_1192 at 1232.004 kb on + strand, within B158DRAFT_1192 at 1232.014 kb on + strand, within B158DRAFT_1192 at 1232.014 kb on + strand, within B158DRAFT_1192 at 1232.022 kb on - strand, within B158DRAFT_1192 at 1232.040 kb on - strand, within B158DRAFT_1192 at 1232.103 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.104 kb on + strand, within B158DRAFT_1192 at 1232.111 kb on + strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.112 kb on - strand, within B158DRAFT_1192 at 1232.173 kb on + strand, within B158DRAFT_1192 at 1232.207 kb on - strand, within B158DRAFT_1192 at 1232.326 kb on + strand at 1232.326 kb on + strand at 1232.326 kb on + strand at 1232.338 kb on + strand at 1232.392 kb on + strand at 1232.558 kb on - strand, within B158DRAFT_1193 at 1232.729 kb on - strand, within B158DRAFT_1193 at 1232.883 kb on - strand, within B158DRAFT_1193 at 1233.393 kb on + strand, within B158DRAFT_1193 at 1233.470 kb on + strand, within B158DRAFT_1193 at 1233.470 kb on + strand, within B158DRAFT_1193 at 1233.479 kb on - strand, within B158DRAFT_1193 at 1233.667 kb on - strand at 1233.709 kb on + strand at 1233.712 kb on - strand at 1233.858 kb on + strand at 1233.858 kb on + strand at 1233.858 kb on + strand at 1233.866 kb on - strand at 1233.868 kb on + strand at 1234.068 kb on + strand, within B158DRAFT_1194 at 1234.075 kb on - strand, within B158DRAFT_1194 at 1234.094 kb on - strand, within B158DRAFT_1194 at 1234.096 kb on + strand, within B158DRAFT_1194 at 1234.104 kb on - strand, within B158DRAFT_1194 at 1234.106 kb on + strand, within B158DRAFT_1194 at 1234.114 kb on - strand, within B158DRAFT_1194 at 1234.168 kb on - strand, within B158DRAFT_1194 at 1234.172 kb on + strand, within B158DRAFT_1194 at 1234.172 kb on + strand, within B158DRAFT_1194 at 1234.180 kb on - strand, within B158DRAFT_1194 at 1234.180 kb on - strand, within B158DRAFT_1194 at 1234.267 kb on - strand, within B158DRAFT_1194 at 1234.407 kb on - strand, within B158DRAFT_1194 at 1234.424 kb on + strand, within B158DRAFT_1194 at 1234.561 kb on + strand at 1234.561 kb on + strand at 1234.561 kb on + strand at 1234.569 kb on - strand at 1234.569 kb on - strand at 1234.672 kb on - strand, within B158DRAFT_1195
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0019531 mg/ml remove 1,231,398 - -0.3 1,231,398 - -0.1 1,231,400 + -0.4 1,231,400 + -0.1 1,231,400 + -0.8 1,231,400 + -0.4 1,231,400 + -0.1 1,231,408 - -1.1 1,231,408 - -0.4 1,231,408 - -0.1 1,231,408 - -1.0 1,231,408 - -0.1 1,231,408 - -0.3 1,231,466 + -0.5 1,231,501 + -0.5 1,231,509 - B158DRAFT_1192 0.10 -0.9 1,231,509 - B158DRAFT_1192 0.10 -2.3 1,231,509 - B158DRAFT_1192 0.10 -2.3 1,231,512 - B158DRAFT_1192 0.11 -2.7 1,231,522 - B158DRAFT_1192 0.12 -1.0 1,231,522 - B158DRAFT_1192 0.12 -1.0 1,231,524 + B158DRAFT_1192 0.12 +0.2 1,231,524 + B158DRAFT_1192 0.12 +0.2 1,231,524 + B158DRAFT_1192 0.12 -0.4 1,231,524 + B158DRAFT_1192 0.12 -0.8 1,231,524 + B158DRAFT_1192 0.12 -1.4 1,231,532 - B158DRAFT_1192 0.13 -1.1 1,231,532 - B158DRAFT_1192 0.13 -0.1 1,231,534 - B158DRAFT_1192 0.13 -2.7 1,231,534 - B158DRAFT_1192 0.13 +0.0 1,231,582 + B158DRAFT_1192 0.18 -2.7 1,231,593 + B158DRAFT_1192 0.19 +0.3 1,231,601 - B158DRAFT_1192 0.20 -0.8 1,231,631 + B158DRAFT_1192 0.23 +0.3 1,231,639 - B158DRAFT_1192 0.24 -0.2 1,231,639 - B158DRAFT_1192 0.24 -2.1 1,231,654 - B158DRAFT_1192 0.25 -1.4 1,231,654 - B158DRAFT_1192 0.25 -1.2 1,231,658 + B158DRAFT_1192 0.26 +1.3 1,231,658 + B158DRAFT_1192 0.26 -0.6 1,231,666 - B158DRAFT_1192 0.27 -1.9 1,231,716 + B158DRAFT_1192 0.32 -0.1 1,231,716 + B158DRAFT_1192 0.32 +0.2 1,231,724 - B158DRAFT_1192 0.33 -1.1 1,231,724 - B158DRAFT_1192 0.33 -1.4 1,231,744 + B158DRAFT_1192 0.35 +0.3 1,231,744 + B158DRAFT_1192 0.35 -0.1 1,231,763 + B158DRAFT_1192 0.37 -0.3 1,231,774 + B158DRAFT_1192 0.38 -0.6 1,231,787 - B158DRAFT_1192 0.39 -0.9 1,231,807 - B158DRAFT_1192 0.41 -1.1 1,231,810 + B158DRAFT_1192 0.41 +0.2 1,231,816 + B158DRAFT_1192 0.42 -0.1 1,231,831 - B158DRAFT_1192 0.44 -1.5 1,231,833 + B158DRAFT_1192 0.44 +1.1 1,231,852 - B158DRAFT_1192 0.46 -1.5 1,231,863 - B158DRAFT_1192 0.47 -0.9 1,231,892 + B158DRAFT_1192 0.50 -0.3 1,231,914 + B158DRAFT_1192 0.52 -0.1 1,231,914 + B158DRAFT_1192 0.52 -0.4 1,231,914 + B158DRAFT_1192 0.52 -0.8 1,231,922 - B158DRAFT_1192 0.53 -1.6 1,231,922 - B158DRAFT_1192 0.53 -1.5 1,231,938 - B158DRAFT_1192 0.55 -0.7 1,231,961 + B158DRAFT_1192 0.57 +0.0 1,231,970 + B158DRAFT_1192 0.58 +0.2 1,231,978 - B158DRAFT_1192 0.59 -1.5 1,231,983 - B158DRAFT_1192 0.59 -2.1 1,231,999 - B158DRAFT_1192 0.61 -2.4 1,232,004 + B158DRAFT_1192 0.61 +0.3 1,232,014 + B158DRAFT_1192 0.62 -0.5 1,232,014 + B158DRAFT_1192 0.62 +0.2 1,232,022 - B158DRAFT_1192 0.63 -1.8 1,232,040 - B158DRAFT_1192 0.65 -1.3 1,232,103 + B158DRAFT_1192 0.72 -0.7 1,232,104 + B158DRAFT_1192 0.72 -0.3 1,232,104 + B158DRAFT_1192 0.72 +0.5 1,232,104 + B158DRAFT_1192 0.72 +0.0 1,232,104 + B158DRAFT_1192 0.72 -0.1 1,232,104 + B158DRAFT_1192 0.72 +0.0 1,232,104 + B158DRAFT_1192 0.72 -0.1 1,232,111 + B158DRAFT_1192 0.72 +0.2 1,232,112 - B158DRAFT_1192 0.73 -0.2 1,232,112 - B158DRAFT_1192 0.73 -1.4 1,232,112 - B158DRAFT_1192 0.73 -2.1 1,232,112 - B158DRAFT_1192 0.73 -1.5 1,232,112 - B158DRAFT_1192 0.73 -0.9 1,232,112 - B158DRAFT_1192 0.73 -1.6 1,232,112 - B158DRAFT_1192 0.73 -1.2 1,232,112 - B158DRAFT_1192 0.73 +0.0 1,232,112 - B158DRAFT_1192 0.73 -1.5 1,232,173 + B158DRAFT_1192 0.79 +0.1 1,232,207 - B158DRAFT_1192 0.82 -0.8 1,232,326 + -0.8 1,232,326 + +0.1 1,232,326 + -0.1 1,232,338 + -0.4 1,232,392 + -1.0 1,232,558 - B158DRAFT_1193 0.12 -2.7 1,232,729 - B158DRAFT_1193 0.24 -1.8 1,232,883 - B158DRAFT_1193 0.35 -2.0 1,233,393 + B158DRAFT_1193 0.71 -2.5 1,233,470 + B158DRAFT_1193 0.76 -1.3 1,233,470 + B158DRAFT_1193 0.76 -1.0 1,233,479 - B158DRAFT_1193 0.77 -2.1 1,233,667 - -3.4 1,233,709 + -1.0 1,233,712 - +0.1 1,233,858 + -0.4 1,233,858 + -0.1 1,233,858 + +0.3 1,233,866 - -0.5 1,233,868 + -0.0 1,234,068 + B158DRAFT_1194 0.23 -0.1 1,234,075 - B158DRAFT_1194 0.24 -0.1 1,234,094 - B158DRAFT_1194 0.27 -0.2 1,234,096 + B158DRAFT_1194 0.27 -0.1 1,234,104 - B158DRAFT_1194 0.28 +0.9 1,234,106 + B158DRAFT_1194 0.29 -0.1 1,234,114 - B158DRAFT_1194 0.30 -0.1 1,234,168 - B158DRAFT_1194 0.39 +1.0 1,234,172 + B158DRAFT_1194 0.39 -0.5 1,234,172 + B158DRAFT_1194 0.39 -0.1 1,234,180 - B158DRAFT_1194 0.41 -0.8 1,234,180 - B158DRAFT_1194 0.41 -0.5 1,234,267 - B158DRAFT_1194 0.55 -0.4 1,234,407 - B158DRAFT_1194 0.78 -0.1 1,234,424 + B158DRAFT_1194 0.80 -0.3 1,234,561 + -0.5 1,234,561 + -1.0 1,234,561 + -0.3 1,234,569 - -0.1 1,234,569 - -0.1 1,234,672 - B158DRAFT_1195 0.12 -0.5
Or see this region's nucleotide sequence