Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0928

Experiment: m.b. Polymyxin B sulfate 0.0019531 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0926 and B158DRAFT_0927 are separated by 3 nucleotidesB158DRAFT_0927 and B158DRAFT_0928 are separated by 10 nucleotidesB158DRAFT_0928 and B158DRAFT_0929 are separated by 127 nucleotidesB158DRAFT_0929 and B158DRAFT_0930 overlap by 4 nucleotides B158DRAFT_0926: B158DRAFT_0926 - hypothetical protein, at 954,335 to 955,486 _0926 B158DRAFT_0927: B158DRAFT_0927 - VCBS repeat, at 955,490 to 956,023 _0927 B158DRAFT_0928: B158DRAFT_0928 - hypothetical protein, at 956,034 to 957,629 _0928 B158DRAFT_0929: B158DRAFT_0929 - Uncharacterized protein conserved in bacteria, at 957,757 to 958,446 _0929 B158DRAFT_0930: B158DRAFT_0930 - RNA polymerase sigma factor, sigma-70 family, at 958,443 to 958,991 _0930 Position (kb) 956 957 958Strain fitness (log2 ratio) -2 -1 0 1at 955.201 kb on - strand, within B158DRAFT_0926at 955.215 kb on - strand, within B158DRAFT_0926at 955.217 kb on + strand, within B158DRAFT_0926at 955.305 kb on - strand, within B158DRAFT_0926at 955.437 kb on - strandat 955.633 kb on + strand, within B158DRAFT_0927at 955.641 kb on - strand, within B158DRAFT_0927at 955.666 kb on + strand, within B158DRAFT_0927at 955.674 kb on - strand, within B158DRAFT_0927at 955.708 kb on + strand, within B158DRAFT_0927at 955.727 kb on - strand, within B158DRAFT_0927at 955.727 kb on - strand, within B158DRAFT_0927at 955.841 kb on - strand, within B158DRAFT_0927at 955.841 kb on - strand, within B158DRAFT_0927at 955.867 kb on + strand, within B158DRAFT_0927at 955.898 kb on - strand, within B158DRAFT_0927at 955.926 kb on + strand, within B158DRAFT_0927at 955.966 kb on - strand, within B158DRAFT_0927at 955.983 kb on + strandat 956.018 kb on + strandat 956.123 kb on + strandat 956.123 kb on + strandat 956.216 kb on - strand, within B158DRAFT_0928at 956.280 kb on - strand, within B158DRAFT_0928at 956.295 kb on + strand, within B158DRAFT_0928at 956.296 kb on - strand, within B158DRAFT_0928at 956.371 kb on - strand, within B158DRAFT_0928at 956.405 kb on + strand, within B158DRAFT_0928at 956.413 kb on - strand, within B158DRAFT_0928at 956.510 kb on + strand, within B158DRAFT_0928at 956.518 kb on - strand, within B158DRAFT_0928at 956.518 kb on - strand, within B158DRAFT_0928at 956.592 kb on + strand, within B158DRAFT_0928at 956.627 kb on - strand, within B158DRAFT_0928at 956.628 kb on + strand, within B158DRAFT_0928at 956.629 kb on - strand, within B158DRAFT_0928at 956.629 kb on - strand, within B158DRAFT_0928at 956.728 kb on + strand, within B158DRAFT_0928at 956.858 kb on - strand, within B158DRAFT_0928at 956.941 kb on - strand, within B158DRAFT_0928at 956.941 kb on - strand, within B158DRAFT_0928at 956.976 kb on + strand, within B158DRAFT_0928at 956.984 kb on - strand, within B158DRAFT_0928at 957.025 kb on + strand, within B158DRAFT_0928at 957.049 kb on + strand, within B158DRAFT_0928at 957.092 kb on + strand, within B158DRAFT_0928at 957.100 kb on - strand, within B158DRAFT_0928at 957.108 kb on - strand, within B158DRAFT_0928at 957.114 kb on + strand, within B158DRAFT_0928at 957.115 kb on - strand, within B158DRAFT_0928at 957.122 kb on - strand, within B158DRAFT_0928at 957.164 kb on + strand, within B158DRAFT_0928at 957.183 kb on + strand, within B158DRAFT_0928at 957.183 kb on + strand, within B158DRAFT_0928at 957.191 kb on - strand, within B158DRAFT_0928at 957.191 kb on - strand, within B158DRAFT_0928at 957.191 kb on - strand, within B158DRAFT_0928at 957.387 kb on + strand, within B158DRAFT_0928at 957.411 kb on + strand, within B158DRAFT_0928at 957.431 kb on + strand, within B158DRAFT_0928at 957.539 kb on - strandat 957.548 kb on + strandat 957.548 kb on + strandat 957.556 kb on - strandat 957.578 kb on - strandat 957.578 kb on - strandat 957.580 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.585 kb on + strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.593 kb on - strandat 957.777 kb on + strandat 957.852 kb on + strand, within B158DRAFT_0929at 957.852 kb on + strand, within B158DRAFT_0929at 957.860 kb on - strand, within B158DRAFT_0929at 957.863 kb on + strand, within B158DRAFT_0929at 957.973 kb on + strand, within B158DRAFT_0929at 957.973 kb on + strand, within B158DRAFT_0929at 957.973 kb on + strand, within B158DRAFT_0929at 957.973 kb on + strand, within B158DRAFT_0929at 957.973 kb on + strand, within B158DRAFT_0929at 957.981 kb on - strand, within B158DRAFT_0929at 957.981 kb on - strand, within B158DRAFT_0929at 957.981 kb on - strand, within B158DRAFT_0929at 957.981 kb on - strand, within B158DRAFT_0929at 957.981 kb on - strand, within B158DRAFT_0929at 958.009 kb on - strand, within B158DRAFT_0929at 958.016 kb on - strand, within B158DRAFT_0929at 958.033 kb on + strand, within B158DRAFT_0929at 958.041 kb on - strand, within B158DRAFT_0929at 958.041 kb on - strand, within B158DRAFT_0929at 958.041 kb on - strand, within B158DRAFT_0929at 958.051 kb on - strand, within B158DRAFT_0929at 958.060 kb on - strand, within B158DRAFT_0929at 958.084 kb on + strand, within B158DRAFT_0929at 958.098 kb on + strand, within B158DRAFT_0929at 958.107 kb on + strand, within B158DRAFT_0929at 958.115 kb on - strand, within B158DRAFT_0929at 958.149 kb on + strand, within B158DRAFT_0929at 958.171 kb on + strand, within B158DRAFT_0929at 958.227 kb on + strand, within B158DRAFT_0929at 958.227 kb on + strand, within B158DRAFT_0929at 958.233 kb on + strand, within B158DRAFT_0929at 958.235 kb on - strand, within B158DRAFT_0929at 958.235 kb on - strand, within B158DRAFT_0929at 958.322 kb on - strand, within B158DRAFT_0929at 958.326 kb on + strand, within B158DRAFT_0929at 958.335 kb on + strand, within B158DRAFT_0929at 958.364 kb on - strand, within B158DRAFT_0929at 958.390 kb on + strandat 958.390 kb on + strandat 958.398 kb on + strandat 958.469 kb on + strandat 958.477 kb on - strandat 958.477 kb on - strandat 958.513 kb on + strand, within B158DRAFT_0930at 958.513 kb on + strand, within B158DRAFT_0930at 958.521 kb on - strand, within B158DRAFT_0930at 958.521 kb on - strand, within B158DRAFT_0930at 958.521 kb on - strand, within B158DRAFT_0930at 958.521 kb on - strand, within B158DRAFT_0930at 958.549 kb on - strand, within B158DRAFT_0930at 958.549 kb on - strand, within B158DRAFT_0930at 958.588 kb on + strand, within B158DRAFT_0930at 958.588 kb on + strand, within B158DRAFT_0930at 958.596 kb on - strand, within B158DRAFT_0930

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Polymyxin B sulfate 0.0019531 mg/ml
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955,201 - B158DRAFT_0926 0.75 -0.8
955,215 - B158DRAFT_0926 0.76 -0.2
955,217 + B158DRAFT_0926 0.77 +0.3
955,305 - B158DRAFT_0926 0.84 -0.1
955,437 - +0.1
955,633 + B158DRAFT_0927 0.27 +0.4
955,641 - B158DRAFT_0927 0.28 +0.2
955,666 + B158DRAFT_0927 0.33 -0.2
955,674 - B158DRAFT_0927 0.34 +0.0
955,708 + B158DRAFT_0927 0.41 -0.3
955,727 - B158DRAFT_0927 0.44 -0.4
955,727 - B158DRAFT_0927 0.44 -0.0
955,841 - B158DRAFT_0927 0.66 -0.7
955,841 - B158DRAFT_0927 0.66 +0.8
955,867 + B158DRAFT_0927 0.71 +0.3
955,898 - B158DRAFT_0927 0.76 +0.1
955,926 + B158DRAFT_0927 0.82 +0.1
955,966 - B158DRAFT_0927 0.89 +0.2
955,983 + -0.7
956,018 + +0.4
956,123 + +0.7
956,123 + -0.1
956,216 - B158DRAFT_0928 0.11 +0.3
956,280 - B158DRAFT_0928 0.15 +0.1
956,295 + B158DRAFT_0928 0.16 +0.1
956,296 - B158DRAFT_0928 0.16 +0.2
956,371 - B158DRAFT_0928 0.21 -0.4
956,405 + B158DRAFT_0928 0.23 +0.0
956,413 - B158DRAFT_0928 0.24 -0.1
956,510 + B158DRAFT_0928 0.30 +1.2
956,518 - B158DRAFT_0928 0.30 -0.0
956,518 - B158DRAFT_0928 0.30 +0.7
956,592 + B158DRAFT_0928 0.35 +0.3
956,627 - B158DRAFT_0928 0.37 -0.1
956,628 + B158DRAFT_0928 0.37 +0.3
956,629 - B158DRAFT_0928 0.37 -0.2
956,629 - B158DRAFT_0928 0.37 +1.4
956,728 + B158DRAFT_0928 0.43 -0.3
956,858 - B158DRAFT_0928 0.52 +0.2
956,941 - B158DRAFT_0928 0.57 -0.0
956,941 - B158DRAFT_0928 0.57 -0.4
956,976 + B158DRAFT_0928 0.59 -1.3
956,984 - B158DRAFT_0928 0.60 -0.0
957,025 + B158DRAFT_0928 0.62 -0.2
957,049 + B158DRAFT_0928 0.64 +0.0
957,092 + B158DRAFT_0928 0.66 -0.7
957,100 - B158DRAFT_0928 0.67 -0.6
957,108 - B158DRAFT_0928 0.67 +0.3
957,114 + B158DRAFT_0928 0.68 +0.2
957,115 - B158DRAFT_0928 0.68 -1.5
957,122 - B158DRAFT_0928 0.68 -0.3
957,164 + B158DRAFT_0928 0.71 +0.2
957,183 + B158DRAFT_0928 0.72 -0.3
957,183 + B158DRAFT_0928 0.72 -0.2
957,191 - B158DRAFT_0928 0.72 -0.2
957,191 - B158DRAFT_0928 0.72 -0.2
957,191 - B158DRAFT_0928 0.72 -0.2
957,387 + B158DRAFT_0928 0.85 +0.3
957,411 + B158DRAFT_0928 0.86 -0.5
957,431 + B158DRAFT_0928 0.88 -1.0
957,539 - +0.5
957,548 + -0.0
957,548 + +0.1
957,556 - -0.3
957,578 - -1.4
957,578 - -0.5
957,580 + -0.6
957,585 + -0.7
957,585 + +0.1
957,585 + -0.7
957,585 + -0.0
957,585 + -0.0
957,585 + -0.2
957,585 + -0.4
957,593 - +0.3
957,593 - -0.3
957,593 - -0.4
957,593 - +0.2
957,593 - -0.7
957,593 - -0.5
957,593 - -0.1
957,593 - +0.9
957,593 - -0.7
957,777 + -0.4
957,852 + B158DRAFT_0929 0.14 -0.4
957,852 + B158DRAFT_0929 0.14 -0.6
957,860 - B158DRAFT_0929 0.15 +0.5
957,863 + B158DRAFT_0929 0.15 -0.0
957,973 + B158DRAFT_0929 0.31 -0.4
957,973 + B158DRAFT_0929 0.31 -0.3
957,973 + B158DRAFT_0929 0.31 -0.1
957,973 + B158DRAFT_0929 0.31 -0.8
957,973 + B158DRAFT_0929 0.31 -0.2
957,981 - B158DRAFT_0929 0.32 +0.9
957,981 - B158DRAFT_0929 0.32 -0.2
957,981 - B158DRAFT_0929 0.32 -0.0
957,981 - B158DRAFT_0929 0.32 -0.4
957,981 - B158DRAFT_0929 0.32 -0.1
958,009 - B158DRAFT_0929 0.37 -0.2
958,016 - B158DRAFT_0929 0.38 -0.2
958,033 + B158DRAFT_0929 0.40 -0.5
958,041 - B158DRAFT_0929 0.41 -0.3
958,041 - B158DRAFT_0929 0.41 -0.2
958,041 - B158DRAFT_0929 0.41 -0.1
958,051 - B158DRAFT_0929 0.43 +0.5
958,060 - B158DRAFT_0929 0.44 +0.0
958,084 + B158DRAFT_0929 0.47 -0.6
958,098 + B158DRAFT_0929 0.49 -0.2
958,107 + B158DRAFT_0929 0.51 -0.9
958,115 - B158DRAFT_0929 0.52 +0.1
958,149 + B158DRAFT_0929 0.57 -0.3
958,171 + B158DRAFT_0929 0.60 -0.5
958,227 + B158DRAFT_0929 0.68 -1.0
958,227 + B158DRAFT_0929 0.68 -0.1
958,233 + B158DRAFT_0929 0.69 -0.1
958,235 - B158DRAFT_0929 0.69 -0.1
958,235 - B158DRAFT_0929 0.69 -0.3
958,322 - B158DRAFT_0929 0.82 -0.1
958,326 + B158DRAFT_0929 0.82 -1.1
958,335 + B158DRAFT_0929 0.84 -0.1
958,364 - B158DRAFT_0929 0.88 -0.2
958,390 + -2.3
958,390 + -0.2
958,398 + -0.6
958,469 + +0.7
958,477 - -1.4
958,477 - -1.4
958,513 + B158DRAFT_0930 0.13 -0.4
958,513 + B158DRAFT_0930 0.13 -0.4
958,521 - B158DRAFT_0930 0.14 -0.3
958,521 - B158DRAFT_0930 0.14 +0.0
958,521 - B158DRAFT_0930 0.14 -0.0
958,521 - B158DRAFT_0930 0.14 +0.3
958,549 - B158DRAFT_0930 0.19 -0.5
958,549 - B158DRAFT_0930 0.19 +0.3
958,588 + B158DRAFT_0930 0.26 -0.1
958,588 + B158DRAFT_0930 0.26 +0.7
958,596 - B158DRAFT_0930 0.28 +0.1

Or see this region's nucleotide sequence