Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0700

Experiment: m.b. perchlorate 100 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0698 and B158DRAFT_0699 overlap by 4 nucleotidesB158DRAFT_0699 and B158DRAFT_0700 overlap by 22 nucleotidesB158DRAFT_0700 and B158DRAFT_0701 are separated by 7 nucleotidesB158DRAFT_0701 and B158DRAFT_0702 are separated by 42 nucleotides B158DRAFT_0698: B158DRAFT_0698 - Type II secretory pathway, component PulM, at 699,649 to 700,131 _0698 B158DRAFT_0699: B158DRAFT_0699 - type II secretion system protein N (GspN), at 700,128 to 700,874 _0699 B158DRAFT_0700: B158DRAFT_0700 - haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED, at 700,853 to 701,527 _0700 B158DRAFT_0701: B158DRAFT_0701 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 701,535 to 702,083 _0701 B158DRAFT_0702: B158DRAFT_0702 - hypothetical protein, at 702,126 to 702,656 _0702 Position (kb) 700 701 702Strain fitness (log2 ratio) -2 -1 0 1at 699.854 kb on + strand, within B158DRAFT_0698at 699.890 kb on + strand, within B158DRAFT_0698at 700.039 kb on + strand, within B158DRAFT_0698at 700.048 kb on - strand, within B158DRAFT_0698at 700.069 kb on - strand, within B158DRAFT_0698at 700.217 kb on - strand, within B158DRAFT_0699at 700.224 kb on + strand, within B158DRAFT_0699at 700.224 kb on + strand, within B158DRAFT_0699at 700.239 kb on - strand, within B158DRAFT_0699at 700.246 kb on + strand, within B158DRAFT_0699at 700.327 kb on - strand, within B158DRAFT_0699at 700.479 kb on + strand, within B158DRAFT_0699at 700.484 kb on + strand, within B158DRAFT_0699at 700.487 kb on - strand, within B158DRAFT_0699at 700.487 kb on - strand, within B158DRAFT_0699at 700.487 kb on - strand, within B158DRAFT_0699at 700.487 kb on - strand, within B158DRAFT_0699at 700.489 kb on + strand, within B158DRAFT_0699at 700.596 kb on - strand, within B158DRAFT_0699at 700.600 kb on + strand, within B158DRAFT_0699at 700.600 kb on + strand, within B158DRAFT_0699at 700.613 kb on - strand, within B158DRAFT_0699at 700.649 kb on + strand, within B158DRAFT_0699at 700.737 kb on - strand, within B158DRAFT_0699at 700.804 kb on - strandat 700.815 kb on + strandat 700.823 kb on - strandat 700.835 kb on + strandat 700.894 kb on + strandat 700.967 kb on - strand, within B158DRAFT_0700at 701.013 kb on - strand, within B158DRAFT_0700at 701.139 kb on + strand, within B158DRAFT_0700at 701.168 kb on - strand, within B158DRAFT_0700at 701.212 kb on + strand, within B158DRAFT_0700at 701.212 kb on + strand, within B158DRAFT_0700at 701.224 kb on + strand, within B158DRAFT_0700at 701.232 kb on - strand, within B158DRAFT_0700at 701.232 kb on - strand, within B158DRAFT_0700at 701.281 kb on + strand, within B158DRAFT_0700at 701.281 kb on + strand, within B158DRAFT_0700at 701.289 kb on - strand, within B158DRAFT_0700at 701.309 kb on + strand, within B158DRAFT_0700at 701.434 kb on + strand, within B158DRAFT_0700at 701.463 kb on - strandat 701.488 kb on - strandat 701.545 kb on - strandat 701.648 kb on + strand, within B158DRAFT_0701at 701.648 kb on + strand, within B158DRAFT_0701at 701.648 kb on + strand, within B158DRAFT_0701at 701.648 kb on + strand, within B158DRAFT_0701at 701.648 kb on + strand, within B158DRAFT_0701at 701.648 kb on + strand, within B158DRAFT_0701at 701.656 kb on - strand, within B158DRAFT_0701at 701.656 kb on - strand, within B158DRAFT_0701at 701.688 kb on + strand, within B158DRAFT_0701at 701.781 kb on + strand, within B158DRAFT_0701at 701.841 kb on - strand, within B158DRAFT_0701at 701.877 kb on - strand, within B158DRAFT_0701at 702.314 kb on + strand, within B158DRAFT_0702at 702.370 kb on - strand, within B158DRAFT_0702at 702.371 kb on + strand, within B158DRAFT_0702at 702.479 kb on - strand, within B158DRAFT_0702

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
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699,854 + B158DRAFT_0698 0.42 -2.0
699,890 + B158DRAFT_0698 0.50 -0.7
700,039 + B158DRAFT_0698 0.81 -1.4
700,048 - B158DRAFT_0698 0.83 -1.7
700,069 - B158DRAFT_0698 0.87 -1.5
700,217 - B158DRAFT_0699 0.12 -0.3
700,224 + B158DRAFT_0699 0.13 -0.1
700,224 + B158DRAFT_0699 0.13 -0.8
700,239 - B158DRAFT_0699 0.15 -0.3
700,246 + B158DRAFT_0699 0.16 -0.1
700,327 - B158DRAFT_0699 0.27 +0.3
700,479 + B158DRAFT_0699 0.47 -0.0
700,484 + B158DRAFT_0699 0.48 -0.2
700,487 - B158DRAFT_0699 0.48 +0.1
700,487 - B158DRAFT_0699 0.48 +0.5
700,487 - B158DRAFT_0699 0.48 -0.1
700,487 - B158DRAFT_0699 0.48 -1.6
700,489 + B158DRAFT_0699 0.48 -0.1
700,596 - B158DRAFT_0699 0.63 +0.0
700,600 + B158DRAFT_0699 0.63 +0.2
700,600 + B158DRAFT_0699 0.63 +0.2
700,613 - B158DRAFT_0699 0.65 -0.1
700,649 + B158DRAFT_0699 0.70 -0.3
700,737 - B158DRAFT_0699 0.82 -0.1
700,804 - +0.3
700,815 + +0.1
700,823 - -0.1
700,835 + +1.6
700,894 + +0.5
700,967 - B158DRAFT_0700 0.17 -0.3
701,013 - B158DRAFT_0700 0.24 -0.2
701,139 + B158DRAFT_0700 0.42 -0.1
701,168 - B158DRAFT_0700 0.47 -0.2
701,212 + B158DRAFT_0700 0.53 +0.6
701,212 + B158DRAFT_0700 0.53 +0.3
701,224 + B158DRAFT_0700 0.55 +1.2
701,232 - B158DRAFT_0700 0.56 +0.4
701,232 - B158DRAFT_0700 0.56 -0.8
701,281 + B158DRAFT_0700 0.63 -0.4
701,281 + B158DRAFT_0700 0.63 -0.3
701,289 - B158DRAFT_0700 0.65 +0.1
701,309 + B158DRAFT_0700 0.68 +0.9
701,434 + B158DRAFT_0700 0.86 +0.1
701,463 - -0.1
701,488 - -0.1
701,545 - -0.3
701,648 + B158DRAFT_0701 0.21 -0.6
701,648 + B158DRAFT_0701 0.21 -0.3
701,648 + B158DRAFT_0701 0.21 -0.6
701,648 + B158DRAFT_0701 0.21 -0.5
701,648 + B158DRAFT_0701 0.21 +0.1
701,648 + B158DRAFT_0701 0.21 -0.8
701,656 - B158DRAFT_0701 0.22 -0.4
701,656 - B158DRAFT_0701 0.22 -0.3
701,688 + B158DRAFT_0701 0.28 +0.8
701,781 + B158DRAFT_0701 0.45 -0.0
701,841 - B158DRAFT_0701 0.56 -0.6
701,877 - B158DRAFT_0701 0.62 +0.1
702,314 + B158DRAFT_0702 0.35 -1.1
702,370 - B158DRAFT_0702 0.46 +1.4
702,371 + B158DRAFT_0702 0.46 +0.1
702,479 - B158DRAFT_0702 0.66 -0.2

Or see this region's nucleotide sequence