Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0047

Experiment: m.b. perchlorate 100 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0045 and B158DRAFT_0046 are separated by 59 nucleotidesB158DRAFT_0046 and B158DRAFT_0047 are separated by 44 nucleotidesB158DRAFT_0047 and B158DRAFT_0048 are separated by 82 nucleotides B158DRAFT_0045: B158DRAFT_0045 - hypothetical protein, at 44,033 to 44,236 _0045 B158DRAFT_0046: B158DRAFT_0046 - Precorrin-4 methylase, at 44,296 to 45,111 _0046 B158DRAFT_0047: B158DRAFT_0047 - Acetyltransferases, including N-acetylases of ribosomal proteins, at 45,156 to 45,695 _0047 B158DRAFT_0048: B158DRAFT_0048 - Leucyl aminopeptidase, at 45,778 to 47,046 _0048 Position (kb) 45 46Strain fitness (log2 ratio) -1 0 1at 44.328 kb on - strandat 44.343 kb on + strandat 44.343 kb on + strandat 44.350 kb on + strandat 44.361 kb on - strandat 44.384 kb on + strand, within B158DRAFT_0046at 44.392 kb on - strand, within B158DRAFT_0046at 44.392 kb on - strand, within B158DRAFT_0046at 44.494 kb on - strand, within B158DRAFT_0046at 44.520 kb on + strand, within B158DRAFT_0046at 44.665 kb on + strand, within B158DRAFT_0046at 44.739 kb on - strand, within B158DRAFT_0046at 44.739 kb on - strand, within B158DRAFT_0046at 44.745 kb on + strand, within B158DRAFT_0046at 44.958 kb on + strand, within B158DRAFT_0046at 44.958 kb on + strand, within B158DRAFT_0046at 45.015 kb on + strand, within B158DRAFT_0046at 45.154 kb on + strandat 45.331 kb on + strand, within B158DRAFT_0047at 45.339 kb on + strand, within B158DRAFT_0047at 45.392 kb on - strand, within B158DRAFT_0047at 45.593 kb on + strand, within B158DRAFT_0047at 45.714 kb on + strandat 45.891 kb on - strandat 45.954 kb on - strand, within B158DRAFT_0048at 45.958 kb on + strand, within B158DRAFT_0048at 45.959 kb on + strand, within B158DRAFT_0048at 45.959 kb on - strand, within B158DRAFT_0048at 45.966 kb on - strand, within B158DRAFT_0048at 46.003 kb on + strand, within B158DRAFT_0048at 46.018 kb on + strand, within B158DRAFT_0048at 46.021 kb on - strand, within B158DRAFT_0048at 46.021 kb on - strand, within B158DRAFT_0048at 46.023 kb on + strand, within B158DRAFT_0048at 46.112 kb on + strand, within B158DRAFT_0048at 46.112 kb on + strand, within B158DRAFT_0048at 46.112 kb on + strand, within B158DRAFT_0048at 46.120 kb on - strand, within B158DRAFT_0048at 46.148 kb on - strand, within B158DRAFT_0048at 46.221 kb on - strand, within B158DRAFT_0048at 46.265 kb on + strand, within B158DRAFT_0048at 46.265 kb on + strand, within B158DRAFT_0048at 46.265 kb on + strand, within B158DRAFT_0048at 46.361 kb on - strand, within B158DRAFT_0048at 46.386 kb on - strand, within B158DRAFT_0048at 46.416 kb on - strand, within B158DRAFT_0048at 46.446 kb on + strand, within B158DRAFT_0048at 46.446 kb on + strand, within B158DRAFT_0048at 46.446 kb on + strand, within B158DRAFT_0048at 46.454 kb on - strand, within B158DRAFT_0048at 46.454 kb on - strand, within B158DRAFT_0048at 46.454 kb on - strand, within B158DRAFT_0048at 46.489 kb on + strand, within B158DRAFT_0048at 46.532 kb on + strand, within B158DRAFT_0048at 46.538 kb on + strand, within B158DRAFT_0048at 46.538 kb on + strand, within B158DRAFT_0048at 46.539 kb on + strand, within B158DRAFT_0048at 46.546 kb on - strand, within B158DRAFT_0048at 46.658 kb on - strand, within B158DRAFT_0048at 46.692 kb on + strand, within B158DRAFT_0048at 46.693 kb on - strand, within B158DRAFT_0048

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. perchlorate 100 mM
remove
44,328 - +0.3
44,343 + -0.4
44,343 + +0.2
44,350 + +0.7
44,361 - +0.1
44,384 + B158DRAFT_0046 0.11 +0.5
44,392 - B158DRAFT_0046 0.12 +0.1
44,392 - B158DRAFT_0046 0.12 +0.4
44,494 - B158DRAFT_0046 0.24 -1.2
44,520 + B158DRAFT_0046 0.27 -0.3
44,665 + B158DRAFT_0046 0.45 +0.1
44,739 - B158DRAFT_0046 0.54 +0.4
44,739 - B158DRAFT_0046 0.54 -0.5
44,745 + B158DRAFT_0046 0.55 -0.1
44,958 + B158DRAFT_0046 0.81 +0.3
44,958 + B158DRAFT_0046 0.81 -0.2
45,015 + B158DRAFT_0046 0.88 -0.1
45,154 + -0.4
45,331 + B158DRAFT_0047 0.32 -0.7
45,339 + B158DRAFT_0047 0.34 -1.4
45,392 - B158DRAFT_0047 0.44 -0.6
45,593 + B158DRAFT_0047 0.81 -0.7
45,714 + +0.1
45,891 - -0.0
45,954 - B158DRAFT_0048 0.14 -0.6
45,958 + B158DRAFT_0048 0.14 +0.9
45,959 + B158DRAFT_0048 0.14 +0.3
45,959 - B158DRAFT_0048 0.14 -0.5
45,966 - B158DRAFT_0048 0.15 -0.4
46,003 + B158DRAFT_0048 0.18 -1.7
46,018 + B158DRAFT_0048 0.19 -0.4
46,021 - B158DRAFT_0048 0.19 -1.0
46,021 - B158DRAFT_0048 0.19 -0.2
46,023 + B158DRAFT_0048 0.19 -0.2
46,112 + B158DRAFT_0048 0.26 +0.1
46,112 + B158DRAFT_0048 0.26 -0.5
46,112 + B158DRAFT_0048 0.26 -0.3
46,120 - B158DRAFT_0048 0.27 -0.3
46,148 - B158DRAFT_0048 0.29 -0.7
46,221 - B158DRAFT_0048 0.35 -0.3
46,265 + B158DRAFT_0048 0.38 +0.9
46,265 + B158DRAFT_0048 0.38 -1.0
46,265 + B158DRAFT_0048 0.38 -0.6
46,361 - B158DRAFT_0048 0.46 -0.3
46,386 - B158DRAFT_0048 0.48 -0.0
46,416 - B158DRAFT_0048 0.50 +0.4
46,446 + B158DRAFT_0048 0.53 +0.0
46,446 + B158DRAFT_0048 0.53 -0.2
46,446 + B158DRAFT_0048 0.53 -0.4
46,454 - B158DRAFT_0048 0.53 -0.3
46,454 - B158DRAFT_0048 0.53 -0.4
46,454 - B158DRAFT_0048 0.53 -0.4
46,489 + B158DRAFT_0048 0.56 -0.8
46,532 + B158DRAFT_0048 0.59 -0.2
46,538 + B158DRAFT_0048 0.60 -0.5
46,538 + B158DRAFT_0048 0.60 -0.1
46,539 + B158DRAFT_0048 0.60 -0.2
46,546 - B158DRAFT_0048 0.61 -0.7
46,658 - B158DRAFT_0048 0.69 -0.7
46,692 + B158DRAFT_0048 0.72 -0.1
46,693 - B158DRAFT_0048 0.72 -0.1

Or see this region's nucleotide sequence