Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1189

Experiment: m.b. Chlorate 20 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1187 and B158DRAFT_1188 are separated by 34 nucleotidesB158DRAFT_1188 and B158DRAFT_1189 are separated by 95 nucleotidesB158DRAFT_1189 and B158DRAFT_1190 are separated by 193 nucleotides B158DRAFT_1187: B158DRAFT_1187 - DNA-directed RNA polymerase specialized sigma subunit, at 1,225,678 to 1,226,307 _1187 B158DRAFT_1188: B158DRAFT_1188 - Protein of unknown function (DUF3307)., at 1,226,342 to 1,227,082 _1188 B158DRAFT_1189: B158DRAFT_1189 - hypothetical protein, at 1,227,178 to 1,228,029 _1189 B158DRAFT_1190: B158DRAFT_1190 - hypothetical protein, at 1,228,223 to 1,230,346 _1190 Position (kb) 1227 1228 1229Strain fitness (log2 ratio) -1 0 1at 1226.204 kb on + strand, within B158DRAFT_1187at 1226.346 kb on - strandat 1226.346 kb on - strandat 1226.412 kb on + strandat 1226.471 kb on + strand, within B158DRAFT_1188at 1226.482 kb on + strand, within B158DRAFT_1188at 1226.482 kb on + strand, within B158DRAFT_1188at 1226.490 kb on - strand, within B158DRAFT_1188at 1226.490 kb on - strand, within B158DRAFT_1188at 1226.572 kb on + strand, within B158DRAFT_1188at 1226.572 kb on + strand, within B158DRAFT_1188at 1226.587 kb on - strand, within B158DRAFT_1188at 1226.591 kb on + strand, within B158DRAFT_1188at 1226.710 kb on - strand, within B158DRAFT_1188at 1226.897 kb on + strand, within B158DRAFT_1188at 1226.933 kb on - strand, within B158DRAFT_1188at 1227.028 kb on - strandat 1227.038 kb on - strandat 1227.058 kb on + strandat 1227.061 kb on - strandat 1227.061 kb on - strandat 1227.061 kb on - strandat 1227.066 kb on - strandat 1227.066 kb on - strandat 1227.094 kb on - strandat 1227.113 kb on + strandat 1227.125 kb on + strandat 1227.125 kb on + strandat 1227.125 kb on + strandat 1227.125 kb on + strandat 1227.125 kb on + strandat 1227.133 kb on - strandat 1227.133 kb on - strandat 1227.133 kb on - strandat 1227.135 kb on - strandat 1227.138 kb on + strandat 1227.317 kb on + strand, within B158DRAFT_1189at 1227.317 kb on + strand, within B158DRAFT_1189at 1227.325 kb on - strand, within B158DRAFT_1189at 1227.325 kb on - strand, within B158DRAFT_1189at 1227.386 kb on + strand, within B158DRAFT_1189at 1227.389 kb on + strand, within B158DRAFT_1189at 1227.399 kb on + strand, within B158DRAFT_1189at 1227.399 kb on + strand, within B158DRAFT_1189at 1227.399 kb on + strand, within B158DRAFT_1189at 1227.399 kb on + strand, within B158DRAFT_1189at 1227.407 kb on - strand, within B158DRAFT_1189at 1227.407 kb on - strand, within B158DRAFT_1189at 1227.407 kb on - strand, within B158DRAFT_1189at 1227.407 kb on - strand, within B158DRAFT_1189at 1227.407 kb on - strand, within B158DRAFT_1189at 1227.407 kb on - strand, within B158DRAFT_1189at 1227.410 kb on - strand, within B158DRAFT_1189at 1227.439 kb on + strand, within B158DRAFT_1189at 1227.447 kb on + strand, within B158DRAFT_1189at 1227.464 kb on + strand, within B158DRAFT_1189at 1227.518 kb on + strand, within B158DRAFT_1189at 1227.526 kb on - strand, within B158DRAFT_1189at 1227.580 kb on - strand, within B158DRAFT_1189at 1227.609 kb on + strand, within B158DRAFT_1189at 1227.644 kb on + strand, within B158DRAFT_1189at 1227.654 kb on + strand, within B158DRAFT_1189at 1227.662 kb on - strand, within B158DRAFT_1189at 1227.687 kb on + strand, within B158DRAFT_1189at 1227.755 kb on - strand, within B158DRAFT_1189at 1227.878 kb on - strand, within B158DRAFT_1189at 1227.894 kb on + strand, within B158DRAFT_1189at 1227.894 kb on + strand, within B158DRAFT_1189at 1227.897 kb on + strand, within B158DRAFT_1189at 1227.926 kb on + strand, within B158DRAFT_1189at 1227.926 kb on + strand, within B158DRAFT_1189at 1227.926 kb on + strand, within B158DRAFT_1189at 1227.926 kb on + strand, within B158DRAFT_1189at 1227.934 kb on - strand, within B158DRAFT_1189at 1227.934 kb on - strand, within B158DRAFT_1189at 1228.136 kb on + strandat 1228.136 kb on + strandat 1228.144 kb on - strandat 1228.144 kb on - strandat 1228.144 kb on - strandat 1228.144 kb on - strandat 1228.187 kb on + strandat 1228.187 kb on + strandat 1228.187 kb on + strandat 1228.187 kb on + strandat 1228.187 kb on + strandat 1228.195 kb on - strandat 1228.195 kb on - strandat 1228.195 kb on - strandat 1228.202 kb on + strandat 1228.202 kb on + strandat 1228.202 kb on + strandat 1228.202 kb on + strandat 1228.202 kb on + strandat 1228.202 kb on + strandat 1228.210 kb on - strandat 1228.210 kb on - strandat 1228.210 kb on - strandat 1228.286 kb on + strandat 1228.302 kb on + strandat 1228.345 kb on - strandat 1228.355 kb on + strandat 1228.355 kb on + strandat 1228.355 kb on + strandat 1228.365 kb on + strandat 1228.405 kb on + strandat 1228.413 kb on - strandat 1228.425 kb on - strandat 1228.425 kb on - strandat 1228.425 kb on - strandat 1228.552 kb on + strand, within B158DRAFT_1190at 1228.555 kb on + strand, within B158DRAFT_1190at 1228.555 kb on + strand, within B158DRAFT_1190at 1228.563 kb on - strand, within B158DRAFT_1190at 1228.623 kb on + strand, within B158DRAFT_1190at 1228.631 kb on - strand, within B158DRAFT_1190at 1228.631 kb on - strand, within B158DRAFT_1190at 1228.655 kb on + strand, within B158DRAFT_1190at 1228.729 kb on + strand, within B158DRAFT_1190at 1228.750 kb on + strand, within B158DRAFT_1190at 1228.788 kb on - strand, within B158DRAFT_1190at 1228.819 kb on - strand, within B158DRAFT_1190at 1228.837 kb on + strand, within B158DRAFT_1190at 1228.844 kb on + strand, within B158DRAFT_1190at 1228.844 kb on + strand, within B158DRAFT_1190at 1228.852 kb on - strand, within B158DRAFT_1190at 1228.852 kb on - strand, within B158DRAFT_1190at 1228.854 kb on + strand, within B158DRAFT_1190at 1228.889 kb on + strand, within B158DRAFT_1190at 1228.889 kb on + strand, within B158DRAFT_1190at 1228.933 kb on + strand, within B158DRAFT_1190at 1228.933 kb on + strand, within B158DRAFT_1190at 1228.941 kb on - strand, within B158DRAFT_1190at 1229.004 kb on - strand, within B158DRAFT_1190at 1229.005 kb on + strand, within B158DRAFT_1190at 1229.010 kb on + strand, within B158DRAFT_1190at 1229.018 kb on - strand, within B158DRAFT_1190at 1229.018 kb on - strand, within B158DRAFT_1190at 1229.018 kb on - strand, within B158DRAFT_1190at 1229.028 kb on - strand, within B158DRAFT_1190

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 20 mM
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1,226,204 + B158DRAFT_1187 0.83 +0.3
1,226,346 - +0.1
1,226,346 - -1.2
1,226,412 + -0.6
1,226,471 + B158DRAFT_1188 0.17 -0.1
1,226,482 + B158DRAFT_1188 0.19 -0.3
1,226,482 + B158DRAFT_1188 0.19 -0.2
1,226,490 - B158DRAFT_1188 0.20 +0.4
1,226,490 - B158DRAFT_1188 0.20 -0.3
1,226,572 + B158DRAFT_1188 0.31 +0.3
1,226,572 + B158DRAFT_1188 0.31 -0.1
1,226,587 - B158DRAFT_1188 0.33 -0.0
1,226,591 + B158DRAFT_1188 0.34 +0.4
1,226,710 - B158DRAFT_1188 0.50 +0.1
1,226,897 + B158DRAFT_1188 0.75 +0.2
1,226,933 - B158DRAFT_1188 0.80 -0.3
1,227,028 - -0.5
1,227,038 - -0.2
1,227,058 + -0.4
1,227,061 - -0.3
1,227,061 - -0.9
1,227,061 - -0.8
1,227,066 - +0.9
1,227,066 - -0.5
1,227,094 - +0.0
1,227,113 + -0.3
1,227,125 + +0.2
1,227,125 + +0.1
1,227,125 + +0.1
1,227,125 + +1.2
1,227,125 + -0.6
1,227,133 - +0.2
1,227,133 - -0.1
1,227,133 - -0.2
1,227,135 - -0.0
1,227,138 + -0.1
1,227,317 + B158DRAFT_1189 0.16 +0.2
1,227,317 + B158DRAFT_1189 0.16 -0.5
1,227,325 - B158DRAFT_1189 0.17 +0.3
1,227,325 - B158DRAFT_1189 0.17 -0.0
1,227,386 + B158DRAFT_1189 0.24 +0.1
1,227,389 + B158DRAFT_1189 0.25 -0.3
1,227,399 + B158DRAFT_1189 0.26 -0.3
1,227,399 + B158DRAFT_1189 0.26 +0.2
1,227,399 + B158DRAFT_1189 0.26 -0.0
1,227,399 + B158DRAFT_1189 0.26 -0.3
1,227,407 - B158DRAFT_1189 0.27 +0.1
1,227,407 - B158DRAFT_1189 0.27 -0.6
1,227,407 - B158DRAFT_1189 0.27 -0.1
1,227,407 - B158DRAFT_1189 0.27 -0.4
1,227,407 - B158DRAFT_1189 0.27 -0.2
1,227,407 - B158DRAFT_1189 0.27 -0.2
1,227,410 - B158DRAFT_1189 0.27 -0.5
1,227,439 + B158DRAFT_1189 0.31 +0.5
1,227,447 + B158DRAFT_1189 0.32 -0.0
1,227,464 + B158DRAFT_1189 0.34 +0.3
1,227,518 + B158DRAFT_1189 0.40 +0.0
1,227,526 - B158DRAFT_1189 0.41 +0.5
1,227,580 - B158DRAFT_1189 0.47 +0.0
1,227,609 + B158DRAFT_1189 0.51 -0.3
1,227,644 + B158DRAFT_1189 0.55 +0.8
1,227,654 + B158DRAFT_1189 0.56 -0.2
1,227,662 - B158DRAFT_1189 0.57 -0.8
1,227,687 + B158DRAFT_1189 0.60 +0.3
1,227,755 - B158DRAFT_1189 0.68 -0.1
1,227,878 - B158DRAFT_1189 0.82 -0.8
1,227,894 + B158DRAFT_1189 0.84 -0.6
1,227,894 + B158DRAFT_1189 0.84 +0.5
1,227,897 + B158DRAFT_1189 0.84 -0.3
1,227,926 + B158DRAFT_1189 0.88 +0.1
1,227,926 + B158DRAFT_1189 0.88 +0.2
1,227,926 + B158DRAFT_1189 0.88 -0.2
1,227,926 + B158DRAFT_1189 0.88 -0.5
1,227,934 - B158DRAFT_1189 0.89 +0.7
1,227,934 - B158DRAFT_1189 0.89 -0.2
1,228,136 + -0.4
1,228,136 + +0.2
1,228,144 - -0.1
1,228,144 - +0.2
1,228,144 - -0.1
1,228,144 - -0.1
1,228,187 + -0.3
1,228,187 + -0.2
1,228,187 + -0.0
1,228,187 + -0.2
1,228,187 + -0.5
1,228,195 - -1.1
1,228,195 - -0.4
1,228,195 - +0.8
1,228,202 + -0.3
1,228,202 + -0.1
1,228,202 + +0.1
1,228,202 + -1.1
1,228,202 + -0.2
1,228,202 + +0.6
1,228,210 - -0.3
1,228,210 - +0.1
1,228,210 - +0.3
1,228,286 + +0.7
1,228,302 + +0.1
1,228,345 - +0.4
1,228,355 + -0.2
1,228,355 + -0.1
1,228,355 + -0.4
1,228,365 + +0.7
1,228,405 + +0.2
1,228,413 - -0.6
1,228,425 - +0.2
1,228,425 - -0.5
1,228,425 - -0.3
1,228,552 + B158DRAFT_1190 0.15 +0.1
1,228,555 + B158DRAFT_1190 0.16 -0.2
1,228,555 + B158DRAFT_1190 0.16 -0.2
1,228,563 - B158DRAFT_1190 0.16 -0.3
1,228,623 + B158DRAFT_1190 0.19 -0.2
1,228,631 - B158DRAFT_1190 0.19 +0.0
1,228,631 - B158DRAFT_1190 0.19 +0.3
1,228,655 + B158DRAFT_1190 0.20 +0.1
1,228,729 + B158DRAFT_1190 0.24 -0.5
1,228,750 + B158DRAFT_1190 0.25 -0.8
1,228,788 - B158DRAFT_1190 0.27 -1.2
1,228,819 - B158DRAFT_1190 0.28 +0.1
1,228,837 + B158DRAFT_1190 0.29 -0.7
1,228,844 + B158DRAFT_1190 0.29 +0.0
1,228,844 + B158DRAFT_1190 0.29 -0.4
1,228,852 - B158DRAFT_1190 0.30 +0.2
1,228,852 - B158DRAFT_1190 0.30 +0.1
1,228,854 + B158DRAFT_1190 0.30 +0.0
1,228,889 + B158DRAFT_1190 0.31 +0.5
1,228,889 + B158DRAFT_1190 0.31 -0.8
1,228,933 + B158DRAFT_1190 0.33 +0.3
1,228,933 + B158DRAFT_1190 0.33 +0.1
1,228,941 - B158DRAFT_1190 0.34 -0.1
1,229,004 - B158DRAFT_1190 0.37 -0.3
1,229,005 + B158DRAFT_1190 0.37 -0.3
1,229,010 + B158DRAFT_1190 0.37 +0.2
1,229,018 - B158DRAFT_1190 0.37 +0.0
1,229,018 - B158DRAFT_1190 0.37 -0.4
1,229,018 - B158DRAFT_1190 0.37 +0.1
1,229,028 - B158DRAFT_1190 0.38 +0.1

Or see this region's nucleotide sequence