Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0003

Experiment: m.b. Chlorate 20 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0002 and B158DRAFT_0003 are separated by 235 nucleotidesB158DRAFT_0003 and B158DRAFT_0004 are separated by 6 nucleotides B158DRAFT_0002: B158DRAFT_0002 - tyrosyl-tRNA synthetase (EC 6.1.1.1), at 2,045 to 3,241 _0002 B158DRAFT_0003: B158DRAFT_0003 - Membrane proteins related to metalloendopeptidases, at 3,477 to 4,988 _0003 B158DRAFT_0004: B158DRAFT_0004 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 4,995 to 6,101 _0004 Position (kb) 3 4 5Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3.278 kb on - strandat 3.297 kb on - strandat 3.297 kb on - strandat 3.912 kb on + strand, within B158DRAFT_0003at 3.912 kb on + strand, within B158DRAFT_0003at 3.920 kb on - strand, within B158DRAFT_0003at 3.920 kb on - strand, within B158DRAFT_0003at 3.920 kb on - strand, within B158DRAFT_0003at 3.920 kb on - strand, within B158DRAFT_0003at 3.927 kb on + strand, within B158DRAFT_0003at 3.927 kb on + strand, within B158DRAFT_0003at 3.927 kb on + strand, within B158DRAFT_0003at 3.935 kb on - strand, within B158DRAFT_0003at 4.191 kb on + strand, within B158DRAFT_0003at 4.437 kb on - strand, within B158DRAFT_0003at 4.477 kb on - strand, within B158DRAFT_0003at 4.523 kb on - strand, within B158DRAFT_0003at 4.595 kb on - strand, within B158DRAFT_0003at 4.704 kb on + strand, within B158DRAFT_0003at 4.714 kb on + strand, within B158DRAFT_0003at 4.714 kb on + strand, within B158DRAFT_0003at 4.845 kb on + strandat 4.878 kb on + strandat 4.967 kb on - strandat 5.038 kb on + strandat 5.175 kb on - strand, within B158DRAFT_0004at 5.257 kb on + strand, within B158DRAFT_0004at 5.290 kb on + strand, within B158DRAFT_0004at 5.332 kb on - strand, within B158DRAFT_0004at 5.355 kb on + strand, within B158DRAFT_0004at 5.363 kb on - strand, within B158DRAFT_0004at 5.417 kb on + strand, within B158DRAFT_0004at 5.417 kb on + strand, within B158DRAFT_0004at 5.435 kb on - strand, within B158DRAFT_0004at 5.439 kb on + strand, within B158DRAFT_0004at 5.439 kb on + strand, within B158DRAFT_0004at 5.439 kb on + strand, within B158DRAFT_0004at 5.444 kb on + strand, within B158DRAFT_0004at 5.447 kb on - strand, within B158DRAFT_0004at 5.481 kb on + strand, within B158DRAFT_0004at 5.481 kb on + strand, within B158DRAFT_0004at 5.489 kb on - strand, within B158DRAFT_0004at 5.489 kb on - strand, within B158DRAFT_0004at 5.517 kb on + strand, within B158DRAFT_0004at 5.576 kb on - strand, within B158DRAFT_0004at 5.610 kb on - strand, within B158DRAFT_0004at 5.642 kb on - strand, within B158DRAFT_0004at 5.703 kb on + strand, within B158DRAFT_0004at 5.703 kb on + strand, within B158DRAFT_0004at 5.711 kb on - strand, within B158DRAFT_0004at 5.711 kb on - strand, within B158DRAFT_0004at 5.736 kb on - strand, within B158DRAFT_0004at 5.760 kb on - strand, within B158DRAFT_0004at 5.857 kb on - strand, within B158DRAFT_0004at 5.866 kb on + strand, within B158DRAFT_0004at 5.868 kb on + strand, within B158DRAFT_0004at 5.874 kb on - strand, within B158DRAFT_0004at 5.874 kb on - strand, within B158DRAFT_0004at 5.874 kb on - strand, within B158DRAFT_0004at 5.876 kb on - strand, within B158DRAFT_0004at 5.876 kb on - strand, within B158DRAFT_0004at 5.876 kb on - strand, within B158DRAFT_0004at 5.958 kb on - strand, within B158DRAFT_0004at 5.970 kb on + strand, within B158DRAFT_0004at 5.970 kb on + strand, within B158DRAFT_0004at 5.978 kb on - strand, within B158DRAFT_0004at 5.980 kb on + strand, within B158DRAFT_0004at 5.988 kb on - strand, within B158DRAFT_0004

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Chlorate 20 mM
remove
3,278 - -0.5
3,297 - -0.4
3,297 - -0.7
3,912 + B158DRAFT_0003 0.29 -0.2
3,912 + B158DRAFT_0003 0.29 +0.6
3,920 - B158DRAFT_0003 0.29 +0.4
3,920 - B158DRAFT_0003 0.29 -0.2
3,920 - B158DRAFT_0003 0.29 -0.8
3,920 - B158DRAFT_0003 0.29 -2.1
3,927 + B158DRAFT_0003 0.30 +0.6
3,927 + B158DRAFT_0003 0.30 +0.7
3,927 + B158DRAFT_0003 0.30 +1.2
3,935 - B158DRAFT_0003 0.30 +0.4
4,191 + B158DRAFT_0003 0.47 +0.6
4,437 - B158DRAFT_0003 0.63 +0.4
4,477 - B158DRAFT_0003 0.66 +0.3
4,523 - B158DRAFT_0003 0.69 +0.7
4,595 - B158DRAFT_0003 0.74 +0.6
4,704 + B158DRAFT_0003 0.81 +0.7
4,714 + B158DRAFT_0003 0.82 +0.6
4,714 + B158DRAFT_0003 0.82 -0.5
4,845 + +0.2
4,878 + -1.0
4,967 - -1.8
5,038 + -2.6
5,175 - B158DRAFT_0004 0.16 -3.1
5,257 + B158DRAFT_0004 0.24 -1.8
5,290 + B158DRAFT_0004 0.27 -3.2
5,332 - B158DRAFT_0004 0.30 -1.4
5,355 + B158DRAFT_0004 0.33 -0.1
5,363 - B158DRAFT_0004 0.33 -2.8
5,417 + B158DRAFT_0004 0.38 -3.3
5,417 + B158DRAFT_0004 0.38 -2.6
5,435 - B158DRAFT_0004 0.40 -1.4
5,439 + B158DRAFT_0004 0.40 -4.4
5,439 + B158DRAFT_0004 0.40 -2.0
5,439 + B158DRAFT_0004 0.40 -2.7
5,444 + B158DRAFT_0004 0.41 -2.0
5,447 - B158DRAFT_0004 0.41 -4.1
5,481 + B158DRAFT_0004 0.44 -1.9
5,481 + B158DRAFT_0004 0.44 -2.2
5,489 - B158DRAFT_0004 0.45 -3.6
5,489 - B158DRAFT_0004 0.45 -2.1
5,517 + B158DRAFT_0004 0.47 -2.6
5,576 - B158DRAFT_0004 0.52 -2.6
5,610 - B158DRAFT_0004 0.56 -3.7
5,642 - B158DRAFT_0004 0.58 -2.9
5,703 + B158DRAFT_0004 0.64 -3.0
5,703 + B158DRAFT_0004 0.64 -3.0
5,711 - B158DRAFT_0004 0.65 -1.4
5,711 - B158DRAFT_0004 0.65 -4.1
5,736 - B158DRAFT_0004 0.67 -2.4
5,760 - B158DRAFT_0004 0.69 -2.4
5,857 - B158DRAFT_0004 0.78 -3.7
5,866 + B158DRAFT_0004 0.79 -1.7
5,868 + B158DRAFT_0004 0.79 -2.0
5,874 - B158DRAFT_0004 0.79 -3.4
5,874 - B158DRAFT_0004 0.79 -2.6
5,874 - B158DRAFT_0004 0.79 -3.1
5,876 - B158DRAFT_0004 0.80 -2.8
5,876 - B158DRAFT_0004 0.80 -4.0
5,876 - B158DRAFT_0004 0.80 -1.4
5,958 - B158DRAFT_0004 0.87 -4.2
5,970 + B158DRAFT_0004 0.88 -2.1
5,970 + B158DRAFT_0004 0.88 -2.6
5,978 - B158DRAFT_0004 0.89 -3.4
5,980 + B158DRAFT_0004 0.89 -1.4
5,988 - B158DRAFT_0004 0.90 -2.4

Or see this region's nucleotide sequence