Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2432

Experiment: m.b. nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2430 and B158DRAFT_2431 overlap by 56 nucleotidesB158DRAFT_2431 and B158DRAFT_2432 are separated by 39 nucleotidesB158DRAFT_2432 and B158DRAFT_2433 are separated by 15 nucleotides B158DRAFT_2430: B158DRAFT_2430 - tryptophan synthase, alpha chain (EC 4.2.1.20), at 603,644 to 604,549 _2430 B158DRAFT_2431: B158DRAFT_2431 - hypothetical protein, at 604,494 to 604,742 _2431 B158DRAFT_2432: B158DRAFT_2432 - 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19), at 604,782 to 606,086 _2432 B158DRAFT_2433: B158DRAFT_2433 - chorismate synthase (EC 4.2.3.5), at 606,102 to 607,199 _2433 Position (kb) 604 605 606 607Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 604.091 kb on + strand, within B158DRAFT_2430at 604.161 kb on - strand, within B158DRAFT_2430at 604.161 kb on - strand, within B158DRAFT_2430at 604.161 kb on - strand, within B158DRAFT_2430at 604.161 kb on - strand, within B158DRAFT_2430at 604.327 kb on - strand, within B158DRAFT_2430at 604.657 kb on - strand, within B158DRAFT_2431at 604.732 kb on + strandat 604.732 kb on - strandat 604.737 kb on + strandat 604.745 kb on - strandat 604.745 kb on - strandat 604.745 kb on - strandat 604.745 kb on - strandat 604.759 kb on - strandat 604.811 kb on + strandat 604.818 kb on - strandat 604.867 kb on - strandat 604.891 kb on + strandat 604.891 kb on + strandat 604.891 kb on + strandat 604.899 kb on - strandat 604.946 kb on + strand, within B158DRAFT_2432at 604.983 kb on + strand, within B158DRAFT_2432at 605.075 kb on + strand, within B158DRAFT_2432at 605.075 kb on + strand, within B158DRAFT_2432at 605.107 kb on - strand, within B158DRAFT_2432at 605.107 kb on - strand, within B158DRAFT_2432at 605.138 kb on - strand, within B158DRAFT_2432at 605.142 kb on + strand, within B158DRAFT_2432at 605.142 kb on + strand, within B158DRAFT_2432at 605.150 kb on - strand, within B158DRAFT_2432at 605.460 kb on + strand, within B158DRAFT_2432at 605.689 kb on + strand, within B158DRAFT_2432at 605.713 kb on - strand, within B158DRAFT_2432at 605.732 kb on - strand, within B158DRAFT_2432at 605.851 kb on - strand, within B158DRAFT_2432at 605.910 kb on + strand, within B158DRAFT_2432at 605.923 kb on - strand, within B158DRAFT_2432at 606.037 kb on + strandat 606.059 kb on - strandat 606.123 kb on + strandat 606.167 kb on - strandat 606.188 kb on - strandat 606.193 kb on - strandat 606.199 kb on + strandat 606.227 kb on - strand, within B158DRAFT_2433at 606.252 kb on + strand, within B158DRAFT_2433at 606.252 kb on + strand, within B158DRAFT_2433at 606.252 kb on + strand, within B158DRAFT_2433at 606.252 kb on + strand, within B158DRAFT_2433at 606.260 kb on - strand, within B158DRAFT_2433at 606.260 kb on - strand, within B158DRAFT_2433at 606.260 kb on - strand, within B158DRAFT_2433at 606.260 kb on - strand, within B158DRAFT_2433at 606.377 kb on - strand, within B158DRAFT_2433at 606.385 kb on + strand, within B158DRAFT_2433at 606.393 kb on - strand, within B158DRAFT_2433at 606.393 kb on - strand, within B158DRAFT_2433at 606.423 kb on + strand, within B158DRAFT_2433at 606.461 kb on + strand, within B158DRAFT_2433at 606.461 kb on + strand, within B158DRAFT_2433at 606.469 kb on - strand, within B158DRAFT_2433at 606.469 kb on - strand, within B158DRAFT_2433at 606.471 kb on + strand, within B158DRAFT_2433at 606.478 kb on + strand, within B158DRAFT_2433at 606.491 kb on - strand, within B158DRAFT_2433at 606.542 kb on + strand, within B158DRAFT_2433at 606.592 kb on + strand, within B158DRAFT_2433at 606.607 kb on - strand, within B158DRAFT_2433at 606.633 kb on + strand, within B158DRAFT_2433at 606.652 kb on + strand, within B158DRAFT_2433at 606.727 kb on + strand, within B158DRAFT_2433at 606.735 kb on - strand, within B158DRAFT_2433at 606.735 kb on - strand, within B158DRAFT_2433at 606.737 kb on + strand, within B158DRAFT_2433at 606.771 kb on - strand, within B158DRAFT_2433at 606.821 kb on + strand, within B158DRAFT_2433at 606.918 kb on - strand, within B158DRAFT_2433

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM
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604,091 + B158DRAFT_2430 0.49 -2.0
604,161 - B158DRAFT_2430 0.57 -1.8
604,161 - B158DRAFT_2430 0.57 -1.9
604,161 - B158DRAFT_2430 0.57 -2.7
604,161 - B158DRAFT_2430 0.57 -3.0
604,327 - B158DRAFT_2430 0.75 -2.0
604,657 - B158DRAFT_2431 0.65 -1.3
604,732 + -0.7
604,732 - -1.4
604,737 + -0.3
604,745 - -1.9
604,745 - -1.7
604,745 - -1.2
604,745 - -0.5
604,759 - -1.8
604,811 + -1.8
604,818 - +0.0
604,867 - -0.5
604,891 + -1.1
604,891 + -2.4
604,891 + -1.6
604,899 - -3.8
604,946 + B158DRAFT_2432 0.13 -0.5
604,983 + B158DRAFT_2432 0.15 -1.6
605,075 + B158DRAFT_2432 0.22 -1.6
605,075 + B158DRAFT_2432 0.22 -1.5
605,107 - B158DRAFT_2432 0.25 -3.5
605,107 - B158DRAFT_2432 0.25 -2.5
605,138 - B158DRAFT_2432 0.27 -0.5
605,142 + B158DRAFT_2432 0.28 -1.0
605,142 + B158DRAFT_2432 0.28 -2.1
605,150 - B158DRAFT_2432 0.28 -0.8
605,460 + B158DRAFT_2432 0.52 -1.6
605,689 + B158DRAFT_2432 0.70 -1.3
605,713 - B158DRAFT_2432 0.71 -2.1
605,732 - B158DRAFT_2432 0.73 -2.5
605,851 - B158DRAFT_2432 0.82 -2.4
605,910 + B158DRAFT_2432 0.86 -0.8
605,923 - B158DRAFT_2432 0.87 -0.0
606,037 + -0.4
606,059 - -1.9
606,123 + -2.3
606,167 - -1.8
606,188 - -1.9
606,193 - -1.8
606,199 + +0.3
606,227 - B158DRAFT_2433 0.11 -0.1
606,252 + B158DRAFT_2433 0.14 -1.7
606,252 + B158DRAFT_2433 0.14 -2.5
606,252 + B158DRAFT_2433 0.14 -0.6
606,252 + B158DRAFT_2433 0.14 -2.0
606,260 - B158DRAFT_2433 0.14 -2.2
606,260 - B158DRAFT_2433 0.14 -1.3
606,260 - B158DRAFT_2433 0.14 -1.9
606,260 - B158DRAFT_2433 0.14 -2.2
606,377 - B158DRAFT_2433 0.25 -1.0
606,385 + B158DRAFT_2433 0.26 -2.1
606,393 - B158DRAFT_2433 0.27 -0.6
606,393 - B158DRAFT_2433 0.27 -2.2
606,423 + B158DRAFT_2433 0.29 -2.0
606,461 + B158DRAFT_2433 0.33 -1.3
606,461 + B158DRAFT_2433 0.33 -1.5
606,469 - B158DRAFT_2433 0.33 -0.5
606,469 - B158DRAFT_2433 0.33 -2.4
606,471 + B158DRAFT_2433 0.34 -2.3
606,478 + B158DRAFT_2433 0.34 -2.7
606,491 - B158DRAFT_2433 0.35 -1.6
606,542 + B158DRAFT_2433 0.40 -0.2
606,592 + B158DRAFT_2433 0.45 -0.7
606,607 - B158DRAFT_2433 0.46 -1.6
606,633 + B158DRAFT_2433 0.48 -2.2
606,652 + B158DRAFT_2433 0.50 -2.2
606,727 + B158DRAFT_2433 0.57 -1.1
606,735 - B158DRAFT_2433 0.58 -2.5
606,735 - B158DRAFT_2433 0.58 -2.2
606,737 + B158DRAFT_2433 0.58 -2.8
606,771 - B158DRAFT_2433 0.61 -1.4
606,821 + B158DRAFT_2433 0.65 -2.1
606,918 - B158DRAFT_2433 0.74 -1.8

Or see this region's nucleotide sequence