Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1341

Experiment: m.b. nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1339 and B158DRAFT_1340 are separated by 130 nucleotidesB158DRAFT_1340 and B158DRAFT_1341 overlap by 8 nucleotidesB158DRAFT_1341 and B158DRAFT_1342 are separated by 179 nucleotides B158DRAFT_1339: B158DRAFT_1339 - L-serine dehydratase, iron-sulfur-dependent, single chain form, at 1,380,566 to 1,381,939 _1339 B158DRAFT_1340: B158DRAFT_1340 - NTP pyrophosphohydrolases including oxidative damage repair enzymes, at 1,382,070 to 1,382,633 _1340 B158DRAFT_1341: B158DRAFT_1341 - aminodeoxychorismate synthase, component I, bacterial clade, at 1,382,626 to 1,384,044 _1341 B158DRAFT_1342: B158DRAFT_1342 - fumarase, class I, homodimeric (EC 4.2.1.2), at 1,384,224 to 1,385,729 _1342 Position (kb) 1382 1383 1384 1385Strain fitness (log2 ratio) -2 -1 0 1 2at 1381.741 kb on - strand, within B158DRAFT_1339at 1381.761 kb on + strand, within B158DRAFT_1339at 1381.762 kb on - strand, within B158DRAFT_1339at 1381.762 kb on - strand, within B158DRAFT_1339at 1381.774 kb on + strand, within B158DRAFT_1339at 1381.854 kb on - strandat 1381.854 kb on - strandat 1381.868 kb on + strandat 1381.873 kb on + strandat 1381.873 kb on + strandat 1381.873 kb on + strandat 1381.873 kb on + strandat 1381.881 kb on - strandat 1381.881 kb on - strandat 1381.881 kb on - strandat 1381.881 kb on - strandat 1381.881 kb on - strandat 1381.881 kb on - strandat 1381.892 kb on + strandat 1381.892 kb on + strandat 1381.898 kb on + strandat 1381.916 kb on - strandat 1381.990 kb on + strandat 1382.000 kb on + strandat 1382.003 kb on - strandat 1382.068 kb on + strandat 1382.068 kb on + strandat 1382.075 kb on - strandat 1382.077 kb on - strandat 1382.077 kb on - strandat 1382.138 kb on + strand, within B158DRAFT_1340at 1382.166 kb on + strand, within B158DRAFT_1340at 1382.199 kb on - strand, within B158DRAFT_1340at 1382.204 kb on - strand, within B158DRAFT_1340at 1382.242 kb on - strand, within B158DRAFT_1340at 1382.267 kb on + strand, within B158DRAFT_1340at 1382.299 kb on + strand, within B158DRAFT_1340at 1382.300 kb on + strand, within B158DRAFT_1340at 1382.382 kb on - strand, within B158DRAFT_1340at 1382.395 kb on + strand, within B158DRAFT_1340at 1382.395 kb on + strand, within B158DRAFT_1340at 1382.400 kb on + strand, within B158DRAFT_1340at 1382.403 kb on - strand, within B158DRAFT_1340at 1382.405 kb on + strand, within B158DRAFT_1340at 1382.405 kb on + strand, within B158DRAFT_1340at 1382.405 kb on + strand, within B158DRAFT_1340at 1382.405 kb on + strand, within B158DRAFT_1340at 1382.408 kb on - strand, within B158DRAFT_1340at 1382.410 kb on + strand, within B158DRAFT_1340at 1382.413 kb on - strand, within B158DRAFT_1340at 1382.413 kb on - strand, within B158DRAFT_1340at 1382.418 kb on - strand, within B158DRAFT_1340at 1382.460 kb on + strand, within B158DRAFT_1340at 1382.460 kb on + strand, within B158DRAFT_1340at 1382.503 kb on + strand, within B158DRAFT_1340at 1382.503 kb on + strand, within B158DRAFT_1340at 1382.556 kb on + strand, within B158DRAFT_1340at 1382.558 kb on + strand, within B158DRAFT_1340at 1382.558 kb on + strand, within B158DRAFT_1340at 1382.598 kb on + strandat 1382.604 kb on + strandat 1382.609 kb on + strandat 1382.612 kb on - strandat 1382.614 kb on + strandat 1382.644 kb on + strandat 1382.645 kb on + strandat 1382.653 kb on - strandat 1382.701 kb on - strandat 1382.707 kb on + strandat 1382.715 kb on - strandat 1382.715 kb on - strandat 1382.758 kb on + strandat 1382.803 kb on + strand, within B158DRAFT_1341at 1382.803 kb on + strand, within B158DRAFT_1341at 1382.803 kb on + strand, within B158DRAFT_1341at 1382.808 kb on + strand, within B158DRAFT_1341at 1382.816 kb on - strand, within B158DRAFT_1341at 1382.823 kb on + strand, within B158DRAFT_1341at 1382.834 kb on - strand, within B158DRAFT_1341at 1382.859 kb on + strand, within B158DRAFT_1341at 1382.867 kb on - strand, within B158DRAFT_1341at 1382.872 kb on + strand, within B158DRAFT_1341at 1382.872 kb on + strand, within B158DRAFT_1341at 1382.872 kb on + strand, within B158DRAFT_1341at 1382.880 kb on - strand, within B158DRAFT_1341at 1382.880 kb on - strand, within B158DRAFT_1341at 1382.963 kb on + strand, within B158DRAFT_1341at 1382.994 kb on - strand, within B158DRAFT_1341at 1383.380 kb on - strand, within B158DRAFT_1341at 1383.395 kb on - strand, within B158DRAFT_1341at 1383.417 kb on + strand, within B158DRAFT_1341at 1383.417 kb on + strand, within B158DRAFT_1341at 1383.422 kb on + strand, within B158DRAFT_1341at 1383.425 kb on - strand, within B158DRAFT_1341at 1383.430 kb on - strand, within B158DRAFT_1341at 1383.698 kb on - strand, within B158DRAFT_1341at 1383.765 kb on + strand, within B158DRAFT_1341at 1383.805 kb on + strand, within B158DRAFT_1341at 1383.805 kb on + strand, within B158DRAFT_1341at 1383.805 kb on + strand, within B158DRAFT_1341at 1383.805 kb on + strand, within B158DRAFT_1341at 1383.813 kb on - strand, within B158DRAFT_1341at 1383.818 kb on + strand, within B158DRAFT_1341at 1383.818 kb on + strand, within B158DRAFT_1341at 1383.818 kb on + strand, within B158DRAFT_1341at 1383.826 kb on - strand, within B158DRAFT_1341at 1383.894 kb on + strand, within B158DRAFT_1341at 1383.894 kb on + strand, within B158DRAFT_1341at 1383.902 kb on - strand, within B158DRAFT_1341at 1383.902 kb on - strand, within B158DRAFT_1341at 1383.944 kb on + strandat 1383.949 kb on + strandat 1383.952 kb on - strandat 1383.957 kb on - strandat 1383.979 kb on + strandat 1383.979 kb on + strandat 1383.986 kb on + strandat 1383.992 kb on - strandat 1384.000 kb on - strandat 1384.136 kb on - strandat 1384.178 kb on + strandat 1384.178 kb on + strandat 1384.191 kb on + strandat 1384.213 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM
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1,381,741 - B158DRAFT_1339 0.86 +0.3
1,381,761 + B158DRAFT_1339 0.87 -0.5
1,381,762 - B158DRAFT_1339 0.87 -0.8
1,381,762 - B158DRAFT_1339 0.87 -0.1
1,381,774 + B158DRAFT_1339 0.88 -0.9
1,381,854 - -0.2
1,381,854 - -0.5
1,381,868 + -0.3
1,381,873 + -0.4
1,381,873 + -0.4
1,381,873 + -0.6
1,381,873 + -1.3
1,381,881 - -0.2
1,381,881 - -1.4
1,381,881 - -0.6
1,381,881 - -0.2
1,381,881 - -1.0
1,381,881 - -0.7
1,381,892 + -0.8
1,381,892 + -0.7
1,381,898 + -2.1
1,381,916 - -0.7
1,381,990 + +0.1
1,382,000 + +0.1
1,382,003 - -0.8
1,382,068 + -0.0
1,382,068 + -0.0
1,382,075 - +0.2
1,382,077 - -0.1
1,382,077 - +0.1
1,382,138 + B158DRAFT_1340 0.12 -0.1
1,382,166 + B158DRAFT_1340 0.17 -0.5
1,382,199 - B158DRAFT_1340 0.23 -0.9
1,382,204 - B158DRAFT_1340 0.24 -0.5
1,382,242 - B158DRAFT_1340 0.30 +0.2
1,382,267 + B158DRAFT_1340 0.35 -0.5
1,382,299 + B158DRAFT_1340 0.41 +0.0
1,382,300 + B158DRAFT_1340 0.41 +0.1
1,382,382 - B158DRAFT_1340 0.55 -0.3
1,382,395 + B158DRAFT_1340 0.58 -0.2
1,382,395 + B158DRAFT_1340 0.58 -0.4
1,382,400 + B158DRAFT_1340 0.59 -0.4
1,382,403 - B158DRAFT_1340 0.59 +0.2
1,382,405 + B158DRAFT_1340 0.59 -0.0
1,382,405 + B158DRAFT_1340 0.59 -0.2
1,382,405 + B158DRAFT_1340 0.59 -0.0
1,382,405 + B158DRAFT_1340 0.59 +0.7
1,382,408 - B158DRAFT_1340 0.60 -0.4
1,382,410 + B158DRAFT_1340 0.60 -0.1
1,382,413 - B158DRAFT_1340 0.61 -0.8
1,382,413 - B158DRAFT_1340 0.61 +0.1
1,382,418 - B158DRAFT_1340 0.62 +0.2
1,382,460 + B158DRAFT_1340 0.69 -0.4
1,382,460 + B158DRAFT_1340 0.69 -1.2
1,382,503 + B158DRAFT_1340 0.77 -0.7
1,382,503 + B158DRAFT_1340 0.77 -0.2
1,382,556 + B158DRAFT_1340 0.86 -0.2
1,382,558 + B158DRAFT_1340 0.87 -0.2
1,382,558 + B158DRAFT_1340 0.87 +0.1
1,382,598 + +0.2
1,382,604 + -1.3
1,382,609 + -0.3
1,382,612 - -0.9
1,382,614 + -0.1
1,382,644 + -0.2
1,382,645 + -0.3
1,382,653 - -0.2
1,382,701 - -0.2
1,382,707 + +0.6
1,382,715 - +0.6
1,382,715 - -0.4
1,382,758 + +0.7
1,382,803 + B158DRAFT_1341 0.12 +0.5
1,382,803 + B158DRAFT_1341 0.12 +0.2
1,382,803 + B158DRAFT_1341 0.12 -0.2
1,382,808 + B158DRAFT_1341 0.13 -0.3
1,382,816 - B158DRAFT_1341 0.13 +0.7
1,382,823 + B158DRAFT_1341 0.14 +0.7
1,382,834 - B158DRAFT_1341 0.15 +1.1
1,382,859 + B158DRAFT_1341 0.16 -0.8
1,382,867 - B158DRAFT_1341 0.17 +1.1
1,382,872 + B158DRAFT_1341 0.17 +0.3
1,382,872 + B158DRAFT_1341 0.17 -0.0
1,382,872 + B158DRAFT_1341 0.17 +0.6
1,382,880 - B158DRAFT_1341 0.18 +0.4
1,382,880 - B158DRAFT_1341 0.18 +0.5
1,382,963 + B158DRAFT_1341 0.24 +0.1
1,382,994 - B158DRAFT_1341 0.26 +0.1
1,383,380 - B158DRAFT_1341 0.53 -1.0
1,383,395 - B158DRAFT_1341 0.54 +0.3
1,383,417 + B158DRAFT_1341 0.56 +0.7
1,383,417 + B158DRAFT_1341 0.56 +1.3
1,383,422 + B158DRAFT_1341 0.56 +0.4
1,383,425 - B158DRAFT_1341 0.56 -0.2
1,383,430 - B158DRAFT_1341 0.57 +0.5
1,383,698 - B158DRAFT_1341 0.76 +0.6
1,383,765 + B158DRAFT_1341 0.80 +1.9
1,383,805 + B158DRAFT_1341 0.83 +0.8
1,383,805 + B158DRAFT_1341 0.83 +0.1
1,383,805 + B158DRAFT_1341 0.83 +0.3
1,383,805 + B158DRAFT_1341 0.83 -1.0
1,383,813 - B158DRAFT_1341 0.84 -0.2
1,383,818 + B158DRAFT_1341 0.84 +0.6
1,383,818 + B158DRAFT_1341 0.84 +0.5
1,383,818 + B158DRAFT_1341 0.84 +0.3
1,383,826 - B158DRAFT_1341 0.85 +0.3
1,383,894 + B158DRAFT_1341 0.89 +0.2
1,383,894 + B158DRAFT_1341 0.89 +1.0
1,383,902 - B158DRAFT_1341 0.90 -0.2
1,383,902 - B158DRAFT_1341 0.90 -0.4
1,383,944 + +0.5
1,383,949 + +0.7
1,383,952 - +0.3
1,383,957 - +0.8
1,383,979 + -0.3
1,383,979 + -0.7
1,383,986 + +0.3
1,383,992 - +0.1
1,384,000 - +0.6
1,384,136 - +1.5
1,384,178 + -0.3
1,384,178 + -0.7
1,384,191 + -2.4
1,384,213 + -2.6

Or see this region's nucleotide sequence