Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1248

Experiment: m.b. nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1247 and B158DRAFT_1248 overlap by 4 nucleotidesB158DRAFT_1248 and B158DRAFT_1249 are separated by 148 nucleotidesB158DRAFT_1249 and B158DRAFT_1250 are separated by 260 nucleotides B158DRAFT_1247: B158DRAFT_1247 - cytochrome bd-I ubiquinol oxidase subunit 1 apoprotein (EC 1.10.3.10), at 1,286,885 to 1,288,306 _1247 B158DRAFT_1248: B158DRAFT_1248 - cytochrome d oxidase, subunit II (cydB), at 1,288,303 to 1,289,319 _1248 B158DRAFT_1249: B158DRAFT_1249 - Lactoylglutathione lyase and related lyases, at 1,289,468 to 1,289,845 _1249 B158DRAFT_1250: B158DRAFT_1250 - PAS domain S-box/diguanylate cyclase (GGDEF) domain, at 1,290,106 to 1,291,107 _1250 Position (kb) 1288 1289 1290Strain fitness (log2 ratio) -3 -2 -1 0 1at 1287.314 kb on - strand, within B158DRAFT_1247at 1287.429 kb on - strand, within B158DRAFT_1247at 1287.429 kb on - strand, within B158DRAFT_1247at 1287.445 kb on + strand, within B158DRAFT_1247at 1287.498 kb on - strand, within B158DRAFT_1247at 1287.589 kb on - strand, within B158DRAFT_1247at 1287.599 kb on - strand, within B158DRAFT_1247at 1287.648 kb on - strand, within B158DRAFT_1247at 1287.648 kb on - strand, within B158DRAFT_1247at 1287.750 kb on - strand, within B158DRAFT_1247at 1287.808 kb on + strand, within B158DRAFT_1247at 1287.859 kb on + strand, within B158DRAFT_1247at 1287.867 kb on - strand, within B158DRAFT_1247at 1287.906 kb on + strand, within B158DRAFT_1247at 1287.913 kb on + strand, within B158DRAFT_1247at 1287.919 kb on - strand, within B158DRAFT_1247at 1287.959 kb on + strand, within B158DRAFT_1247at 1287.959 kb on + strand, within B158DRAFT_1247at 1287.959 kb on + strand, within B158DRAFT_1247at 1287.959 kb on + strand, within B158DRAFT_1247at 1287.967 kb on + strand, within B158DRAFT_1247at 1287.967 kb on + strand, within B158DRAFT_1247at 1287.967 kb on - strand, within B158DRAFT_1247at 1287.967 kb on - strand, within B158DRAFT_1247at 1287.967 kb on - strand, within B158DRAFT_1247at 1287.967 kb on - strand, within B158DRAFT_1247at 1287.967 kb on - strand, within B158DRAFT_1247at 1287.967 kb on - strand, within B158DRAFT_1247at 1287.993 kb on - strand, within B158DRAFT_1247at 1288.043 kb on + strand, within B158DRAFT_1247at 1288.043 kb on + strand, within B158DRAFT_1247at 1288.049 kb on + strand, within B158DRAFT_1247at 1288.069 kb on + strand, within B158DRAFT_1247at 1288.069 kb on + strand, within B158DRAFT_1247at 1288.069 kb on + strand, within B158DRAFT_1247at 1288.069 kb on + strand, within B158DRAFT_1247at 1288.077 kb on - strand, within B158DRAFT_1247at 1288.077 kb on - strand, within B158DRAFT_1247at 1288.077 kb on - strand, within B158DRAFT_1247at 1288.077 kb on - strand, within B158DRAFT_1247at 1288.077 kb on - strand, within B158DRAFT_1247at 1288.077 kb on - strand, within B158DRAFT_1247at 1288.156 kb on + strand, within B158DRAFT_1247at 1288.164 kb on - strandat 1288.171 kb on + strandat 1288.179 kb on - strandat 1288.201 kb on + strandat 1288.246 kb on + strandat 1288.326 kb on - strandat 1288.348 kb on + strandat 1288.373 kb on + strandat 1288.450 kb on + strand, within B158DRAFT_1248at 1288.460 kb on + strand, within B158DRAFT_1248at 1288.468 kb on - strand, within B158DRAFT_1248at 1288.508 kb on - strand, within B158DRAFT_1248at 1288.518 kb on - strand, within B158DRAFT_1248at 1288.527 kb on + strand, within B158DRAFT_1248at 1288.536 kb on + strand, within B158DRAFT_1248at 1288.536 kb on + strand, within B158DRAFT_1248at 1288.558 kb on + strand, within B158DRAFT_1248at 1288.607 kb on + strand, within B158DRAFT_1248at 1288.647 kb on + strand, within B158DRAFT_1248at 1288.655 kb on - strand, within B158DRAFT_1248at 1288.660 kb on - strand, within B158DRAFT_1248at 1288.691 kb on + strand, within B158DRAFT_1248at 1288.696 kb on + strand, within B158DRAFT_1248at 1288.721 kb on - strand, within B158DRAFT_1248at 1288.728 kb on + strand, within B158DRAFT_1248at 1288.728 kb on + strand, within B158DRAFT_1248at 1288.728 kb on + strand, within B158DRAFT_1248at 1288.728 kb on + strand, within B158DRAFT_1248at 1288.728 kb on + strand, within B158DRAFT_1248at 1288.730 kb on + strand, within B158DRAFT_1248at 1288.736 kb on - strand, within B158DRAFT_1248at 1288.736 kb on - strand, within B158DRAFT_1248at 1289.042 kb on - strand, within B158DRAFT_1248at 1289.042 kb on - strand, within B158DRAFT_1248at 1289.042 kb on - strand, within B158DRAFT_1248at 1289.073 kb on - strand, within B158DRAFT_1248at 1289.136 kb on - strand, within B158DRAFT_1248at 1289.162 kb on - strand, within B158DRAFT_1248at 1289.162 kb on - strand, within B158DRAFT_1248at 1289.186 kb on + strand, within B158DRAFT_1248at 1289.242 kb on - strandat 1289.301 kb on + strandat 1289.323 kb on + strandat 1289.342 kb on + strandat 1289.350 kb on - strandat 1289.350 kb on - strandat 1289.387 kb on - strandat 1289.407 kb on - strandat 1289.412 kb on - strandat 1289.425 kb on + strandat 1289.702 kb on + strand, within B158DRAFT_1249at 1289.702 kb on + strand, within B158DRAFT_1249at 1289.782 kb on + strand, within B158DRAFT_1249at 1289.796 kb on + strand, within B158DRAFT_1249at 1289.806 kb on + strand, within B158DRAFT_1249at 1289.812 kb on + strandat 1289.820 kb on - strandat 1289.820 kb on - strandat 1289.820 kb on - strandat 1289.820 kb on - strandat 1290.025 kb on + strandat 1290.039 kb on + strandat 1290.047 kb on - strandat 1290.065 kb on + strandat 1290.066 kb on - strandat 1290.109 kb on + strandat 1290.109 kb on + strandat 1290.109 kb on + strandat 1290.109 kb on + strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.117 kb on - strandat 1290.131 kb on + strandat 1290.182 kb on + strandat 1290.207 kb on - strand, within B158DRAFT_1250at 1290.247 kb on + strand, within B158DRAFT_1250

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM
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1,287,314 - B158DRAFT_1247 0.30 -0.4
1,287,429 - B158DRAFT_1247 0.38 -0.2
1,287,429 - B158DRAFT_1247 0.38 -1.1
1,287,445 + B158DRAFT_1247 0.39 +0.3
1,287,498 - B158DRAFT_1247 0.43 -0.8
1,287,589 - B158DRAFT_1247 0.50 -0.9
1,287,599 - B158DRAFT_1247 0.50 -0.2
1,287,648 - B158DRAFT_1247 0.54 -0.0
1,287,648 - B158DRAFT_1247 0.54 +0.1
1,287,750 - B158DRAFT_1247 0.61 -0.3
1,287,808 + B158DRAFT_1247 0.65 -0.1
1,287,859 + B158DRAFT_1247 0.68 -0.5
1,287,867 - B158DRAFT_1247 0.69 +0.6
1,287,906 + B158DRAFT_1247 0.72 -1.0
1,287,913 + B158DRAFT_1247 0.72 +0.7
1,287,919 - B158DRAFT_1247 0.73 -0.7
1,287,959 + B158DRAFT_1247 0.76 -0.1
1,287,959 + B158DRAFT_1247 0.76 +0.3
1,287,959 + B158DRAFT_1247 0.76 -1.7
1,287,959 + B158DRAFT_1247 0.76 -0.2
1,287,967 + B158DRAFT_1247 0.76 -0.5
1,287,967 + B158DRAFT_1247 0.76 -0.7
1,287,967 - B158DRAFT_1247 0.76 -0.5
1,287,967 - B158DRAFT_1247 0.76 -1.0
1,287,967 - B158DRAFT_1247 0.76 -1.7
1,287,967 - B158DRAFT_1247 0.76 -0.7
1,287,967 - B158DRAFT_1247 0.76 -0.1
1,287,967 - B158DRAFT_1247 0.76 +0.4
1,287,993 - B158DRAFT_1247 0.78 -0.3
1,288,043 + B158DRAFT_1247 0.81 -0.3
1,288,043 + B158DRAFT_1247 0.81 -0.6
1,288,049 + B158DRAFT_1247 0.82 -0.8
1,288,069 + B158DRAFT_1247 0.83 -0.3
1,288,069 + B158DRAFT_1247 0.83 +0.9
1,288,069 + B158DRAFT_1247 0.83 -0.2
1,288,069 + B158DRAFT_1247 0.83 -0.8
1,288,077 - B158DRAFT_1247 0.84 -0.5
1,288,077 - B158DRAFT_1247 0.84 -0.7
1,288,077 - B158DRAFT_1247 0.84 -0.4
1,288,077 - B158DRAFT_1247 0.84 -0.0
1,288,077 - B158DRAFT_1247 0.84 -1.4
1,288,077 - B158DRAFT_1247 0.84 +0.4
1,288,156 + B158DRAFT_1247 0.89 -0.2
1,288,164 - -0.4
1,288,171 + -0.5
1,288,179 - -1.3
1,288,201 + -0.4
1,288,246 + -0.4
1,288,326 - -0.3
1,288,348 + +0.0
1,288,373 + -1.2
1,288,450 + B158DRAFT_1248 0.14 +0.7
1,288,460 + B158DRAFT_1248 0.15 -0.8
1,288,468 - B158DRAFT_1248 0.16 -0.1
1,288,508 - B158DRAFT_1248 0.20 -0.5
1,288,518 - B158DRAFT_1248 0.21 +0.5
1,288,527 + B158DRAFT_1248 0.22 -1.5
1,288,536 + B158DRAFT_1248 0.23 -0.3
1,288,536 + B158DRAFT_1248 0.23 -0.8
1,288,558 + B158DRAFT_1248 0.25 -0.2
1,288,607 + B158DRAFT_1248 0.30 -0.7
1,288,647 + B158DRAFT_1248 0.34 -0.3
1,288,655 - B158DRAFT_1248 0.35 -0.8
1,288,660 - B158DRAFT_1248 0.35 +0.0
1,288,691 + B158DRAFT_1248 0.38 +0.4
1,288,696 + B158DRAFT_1248 0.39 -0.9
1,288,721 - B158DRAFT_1248 0.41 -0.7
1,288,728 + B158DRAFT_1248 0.42 -0.4
1,288,728 + B158DRAFT_1248 0.42 -0.5
1,288,728 + B158DRAFT_1248 0.42 -0.4
1,288,728 + B158DRAFT_1248 0.42 -0.7
1,288,728 + B158DRAFT_1248 0.42 -0.1
1,288,730 + B158DRAFT_1248 0.42 -1.0
1,288,736 - B158DRAFT_1248 0.43 -0.8
1,288,736 - B158DRAFT_1248 0.43 -0.1
1,289,042 - B158DRAFT_1248 0.73 -1.3
1,289,042 - B158DRAFT_1248 0.73 -0.9
1,289,042 - B158DRAFT_1248 0.73 +0.2
1,289,073 - B158DRAFT_1248 0.76 -0.3
1,289,136 - B158DRAFT_1248 0.82 -0.6
1,289,162 - B158DRAFT_1248 0.84 +0.0
1,289,162 - B158DRAFT_1248 0.84 -0.3
1,289,186 + B158DRAFT_1248 0.87 -0.6
1,289,242 - -2.8
1,289,301 + -0.5
1,289,323 + -0.2
1,289,342 + +0.3
1,289,350 - +0.0
1,289,350 - +0.7
1,289,387 - -0.6
1,289,407 - +0.2
1,289,412 - -0.1
1,289,425 + +0.3
1,289,702 + B158DRAFT_1249 0.62 -0.3
1,289,702 + B158DRAFT_1249 0.62 -0.3
1,289,782 + B158DRAFT_1249 0.83 +0.2
1,289,796 + B158DRAFT_1249 0.87 -0.1
1,289,806 + B158DRAFT_1249 0.89 -0.0
1,289,812 + +0.5
1,289,820 - -0.2
1,289,820 - -0.3
1,289,820 - -0.4
1,289,820 - -0.1
1,290,025 + +0.1
1,290,039 + -0.3
1,290,047 - +0.0
1,290,065 + +0.1
1,290,066 - +0.3
1,290,109 + -0.1
1,290,109 + -0.5
1,290,109 + -0.5
1,290,109 + -0.5
1,290,117 - -0.0
1,290,117 - -0.2
1,290,117 - -0.0
1,290,117 - +0.2
1,290,117 - +0.2
1,290,117 - +0.5
1,290,117 - -0.4
1,290,117 - -0.1
1,290,131 + -0.3
1,290,182 + -0.0
1,290,207 - B158DRAFT_1250 0.10 -0.6
1,290,247 + B158DRAFT_1250 0.14 +0.2

Or see this region's nucleotide sequence