Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0589

Experiment: m.b. nitrate 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_0588 and B158DRAFT_0589 are separated by 272 nucleotidesB158DRAFT_0589 and B158DRAFT_0590 are separated by 58 nucleotides B158DRAFT_0588: B158DRAFT_0588 - ribonuclease PH, at 592,670 to 593,386 _0588 B158DRAFT_0589: B158DRAFT_0589 - hypothetical protein, at 593,659 to 594,528 _0589 B158DRAFT_0590: B158DRAFT_0590 - hypothetical protein, at 594,587 to 595,435 _0590 Position (kb) 593 594 595Strain fitness (log2 ratio) -2 -1 0 1 2at 592.660 kb on + strandat 592.660 kb on + strandat 592.668 kb on - strandat 592.755 kb on + strand, within B158DRAFT_0588at 592.978 kb on + strand, within B158DRAFT_0588at 592.986 kb on - strand, within B158DRAFT_0588at 593.130 kb on + strand, within B158DRAFT_0588at 593.162 kb on + strand, within B158DRAFT_0588at 593.162 kb on + strand, within B158DRAFT_0588at 593.170 kb on - strand, within B158DRAFT_0588at 593.176 kb on + strand, within B158DRAFT_0588at 593.184 kb on - strand, within B158DRAFT_0588at 593.205 kb on + strand, within B158DRAFT_0588at 593.213 kb on - strand, within B158DRAFT_0588at 593.213 kb on - strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.216 kb on + strand, within B158DRAFT_0588at 593.219 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.224 kb on - strand, within B158DRAFT_0588at 593.240 kb on + strand, within B158DRAFT_0588at 593.240 kb on + strand, within B158DRAFT_0588at 593.248 kb on - strand, within B158DRAFT_0588at 593.248 kb on - strand, within B158DRAFT_0588at 593.250 kb on + strand, within B158DRAFT_0588at 593.250 kb on + strand, within B158DRAFT_0588at 593.250 kb on + strand, within B158DRAFT_0588at 593.250 kb on + strand, within B158DRAFT_0588at 593.258 kb on - strand, within B158DRAFT_0588at 593.258 kb on - strand, within B158DRAFT_0588at 593.276 kb on - strand, within B158DRAFT_0588at 593.302 kb on + strand, within B158DRAFT_0588at 593.302 kb on + strand, within B158DRAFT_0588at 593.302 kb on + strand, within B158DRAFT_0588at 593.305 kb on - strand, within B158DRAFT_0588at 593.310 kb on - strand, within B158DRAFT_0588at 593.310 kb on - strand, within B158DRAFT_0588at 593.310 kb on - strand, within B158DRAFT_0588at 593.310 kb on - strand, within B158DRAFT_0588at 593.408 kb on + strandat 593.408 kb on + strandat 593.416 kb on - strandat 593.416 kb on - strandat 593.418 kb on + strandat 593.469 kb on - strandat 593.474 kb on + strandat 593.475 kb on - strandat 593.482 kb on - strandat 593.482 kb on - strandat 593.606 kb on + strandat 593.624 kb on + strandat 593.625 kb on + strandat 593.625 kb on + strandat 593.632 kb on - strandat 593.632 kb on - strandat 593.632 kb on - strandat 593.633 kb on - strandat 593.633 kb on - strandat 593.675 kb on + strandat 593.675 kb on + strandat 593.675 kb on + strandat 593.680 kb on + strandat 593.680 kb on + strandat 593.683 kb on - strandat 593.683 kb on - strandat 593.688 kb on - strandat 593.726 kb on + strandat 593.777 kb on + strand, within B158DRAFT_0589at 593.807 kb on + strand, within B158DRAFT_0589at 593.830 kb on - strand, within B158DRAFT_0589at 593.880 kb on + strand, within B158DRAFT_0589at 593.910 kb on + strand, within B158DRAFT_0589at 593.940 kb on - strand, within B158DRAFT_0589at 593.981 kb on - strand, within B158DRAFT_0589at 593.981 kb on - strand, within B158DRAFT_0589at 593.981 kb on - strand, within B158DRAFT_0589at 593.981 kb on - strand, within B158DRAFT_0589at 593.981 kb on - strand, within B158DRAFT_0589at 594.027 kb on + strand, within B158DRAFT_0589at 594.027 kb on + strand, within B158DRAFT_0589at 594.035 kb on - strand, within B158DRAFT_0589at 594.035 kb on - strand, within B158DRAFT_0589at 594.035 kb on - strand, within B158DRAFT_0589at 594.086 kb on + strand, within B158DRAFT_0589at 594.094 kb on - strand, within B158DRAFT_0589at 594.191 kb on + strand, within B158DRAFT_0589at 594.229 kb on + strand, within B158DRAFT_0589at 594.229 kb on + strand, within B158DRAFT_0589at 594.237 kb on - strand, within B158DRAFT_0589at 594.237 kb on - strand, within B158DRAFT_0589at 594.237 kb on - strand, within B158DRAFT_0589at 594.258 kb on + strand, within B158DRAFT_0589at 594.266 kb on + strand, within B158DRAFT_0589at 594.266 kb on + strand, within B158DRAFT_0589at 594.266 kb on + strand, within B158DRAFT_0589at 594.266 kb on + strand, within B158DRAFT_0589at 594.268 kb on - strand, within B158DRAFT_0589at 594.273 kb on - strand, within B158DRAFT_0589at 594.274 kb on - strand, within B158DRAFT_0589at 594.274 kb on - strand, within B158DRAFT_0589at 594.274 kb on - strand, within B158DRAFT_0589at 594.276 kb on - strand, within B158DRAFT_0589at 594.333 kb on - strand, within B158DRAFT_0589at 594.351 kb on + strand, within B158DRAFT_0589at 594.352 kb on - strand, within B158DRAFT_0589at 594.352 kb on - strand, within B158DRAFT_0589at 594.359 kb on - strand, within B158DRAFT_0589at 594.381 kb on + strand, within B158DRAFT_0589at 594.396 kb on + strand, within B158DRAFT_0589at 594.411 kb on - strand, within B158DRAFT_0589at 594.481 kb on - strandat 594.485 kb on + strandat 594.522 kb on + strandat 594.530 kb on - strandat 594.612 kb on + strandat 594.612 kb on + strandat 594.612 kb on + strandat 594.612 kb on + strandat 594.620 kb on - strandat 594.620 kb on - strandat 594.620 kb on - strandat 594.620 kb on - strandat 594.620 kb on - strandat 594.620 kb on - strandat 594.620 kb on - strandat 594.620 kb on - strandat 594.622 kb on + strandat 594.646 kb on - strandat 594.780 kb on - strand, within B158DRAFT_0590at 594.842 kb on + strand, within B158DRAFT_0590at 594.844 kb on + strand, within B158DRAFT_0590at 594.860 kb on - strand, within B158DRAFT_0590at 594.879 kb on - strand, within B158DRAFT_0590at 594.887 kb on - strand, within B158DRAFT_0590at 594.887 kb on - strand, within B158DRAFT_0590at 594.889 kb on - strand, within B158DRAFT_0590at 595.086 kb on + strand, within B158DRAFT_0590at 595.163 kb on - strand, within B158DRAFT_0590at 595.185 kb on - strand, within B158DRAFT_0590at 595.219 kb on + strand, within B158DRAFT_0590at 595.233 kb on - strand, within B158DRAFT_0590at 595.249 kb on - strand, within B158DRAFT_0590at 595.328 kb on + strand, within B158DRAFT_0590at 595.345 kb on - strand, within B158DRAFT_0590at 595.447 kb on + strandat 595.504 kb on - strandat 595.504 kb on - strandat 595.504 kb on - strandat 595.511 kb on - strandat 595.516 kb on + strandat 595.516 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM
remove
592,660 + +0.1
592,660 + +0.5
592,668 - -0.8
592,755 + B158DRAFT_0588 0.12 +0.8
592,978 + B158DRAFT_0588 0.43 +0.2
592,986 - B158DRAFT_0588 0.44 +0.4
593,130 + B158DRAFT_0588 0.64 +0.8
593,162 + B158DRAFT_0588 0.69 -0.6
593,162 + B158DRAFT_0588 0.69 +0.4
593,170 - B158DRAFT_0588 0.70 +0.5
593,176 + B158DRAFT_0588 0.71 +0.1
593,184 - B158DRAFT_0588 0.72 +0.0
593,205 + B158DRAFT_0588 0.75 -0.4
593,213 - B158DRAFT_0588 0.76 +0.2
593,213 - B158DRAFT_0588 0.76 +0.4
593,216 + B158DRAFT_0588 0.76 +0.1
593,216 + B158DRAFT_0588 0.76 +1.0
593,216 + B158DRAFT_0588 0.76 -0.0
593,216 + B158DRAFT_0588 0.76 +0.1
593,216 + B158DRAFT_0588 0.76 +0.5
593,216 + B158DRAFT_0588 0.76 +0.2
593,216 + B158DRAFT_0588 0.76 -0.2
593,216 + B158DRAFT_0588 0.76 +0.1
593,216 + B158DRAFT_0588 0.76 +0.3
593,216 + B158DRAFT_0588 0.76 +0.8
593,216 + B158DRAFT_0588 0.76 +0.4
593,216 + B158DRAFT_0588 0.76 -1.1
593,216 + B158DRAFT_0588 0.76 -0.2
593,216 + B158DRAFT_0588 0.76 -0.4
593,216 + B158DRAFT_0588 0.76 -0.0
593,216 + B158DRAFT_0588 0.76 +0.3
593,216 + B158DRAFT_0588 0.76 +0.4
593,216 + B158DRAFT_0588 0.76 -0.1
593,216 + B158DRAFT_0588 0.76 +0.4
593,216 + B158DRAFT_0588 0.76 +0.8
593,216 + B158DRAFT_0588 0.76 -0.1
593,216 + B158DRAFT_0588 0.76 -0.0
593,216 + B158DRAFT_0588 0.76 +0.5
593,216 + B158DRAFT_0588 0.76 +0.2
593,216 + B158DRAFT_0588 0.76 +0.0
593,216 + B158DRAFT_0588 0.76 -0.2
593,219 - B158DRAFT_0588 0.77 +0.4
593,224 - B158DRAFT_0588 0.77 +1.3
593,224 - B158DRAFT_0588 0.77 +0.4
593,224 - B158DRAFT_0588 0.77 +0.2
593,224 - B158DRAFT_0588 0.77 -0.3
593,224 - B158DRAFT_0588 0.77 +0.3
593,224 - B158DRAFT_0588 0.77 +0.1
593,224 - B158DRAFT_0588 0.77 -0.1
593,224 - B158DRAFT_0588 0.77 -0.1
593,224 - B158DRAFT_0588 0.77 -0.7
593,224 - B158DRAFT_0588 0.77 +0.2
593,224 - B158DRAFT_0588 0.77 +0.0
593,224 - B158DRAFT_0588 0.77 -0.1
593,224 - B158DRAFT_0588 0.77 +0.3
593,224 - B158DRAFT_0588 0.77 -0.2
593,224 - B158DRAFT_0588 0.77 +0.2
593,240 + B158DRAFT_0588 0.79 +0.1
593,240 + B158DRAFT_0588 0.79 -0.1
593,248 - B158DRAFT_0588 0.81 +0.6
593,248 - B158DRAFT_0588 0.81 +0.6
593,250 + B158DRAFT_0588 0.81 +0.4
593,250 + B158DRAFT_0588 0.81 -0.4
593,250 + B158DRAFT_0588 0.81 +0.8
593,250 + B158DRAFT_0588 0.81 +0.3
593,258 - B158DRAFT_0588 0.82 -0.0
593,258 - B158DRAFT_0588 0.82 -0.1
593,276 - B158DRAFT_0588 0.85 -0.0
593,302 + B158DRAFT_0588 0.88 -0.1
593,302 + B158DRAFT_0588 0.88 +1.8
593,302 + B158DRAFT_0588 0.88 +0.1
593,305 - B158DRAFT_0588 0.89 +0.4
593,310 - B158DRAFT_0588 0.89 +1.0
593,310 - B158DRAFT_0588 0.89 +0.3
593,310 - B158DRAFT_0588 0.89 +0.2
593,310 - B158DRAFT_0588 0.89 -0.2
593,408 + +0.3
593,408 + +0.5
593,416 - +0.7
593,416 - +0.1
593,418 + -0.0
593,469 - +0.1
593,474 + -0.7
593,475 - -0.1
593,482 - -0.2
593,482 - +0.7
593,606 + -0.2
593,624 + -0.6
593,625 + +0.4
593,625 + +0.1
593,632 - +0.5
593,632 - +0.5
593,632 - -1.4
593,633 - +0.3
593,633 - -0.3
593,675 + -0.2
593,675 + +0.0
593,675 + +0.3
593,680 + +0.1
593,680 + -0.3
593,683 - -0.4
593,683 - +0.2
593,688 - +0.3
593,726 + +1.0
593,777 + B158DRAFT_0589 0.14 -0.2
593,807 + B158DRAFT_0589 0.17 -2.3
593,830 - B158DRAFT_0589 0.20 +0.3
593,880 + B158DRAFT_0589 0.25 -0.2
593,910 + B158DRAFT_0589 0.29 -0.4
593,940 - B158DRAFT_0589 0.32 +0.4
593,981 - B158DRAFT_0589 0.37 -0.3
593,981 - B158DRAFT_0589 0.37 -0.7
593,981 - B158DRAFT_0589 0.37 +0.1
593,981 - B158DRAFT_0589 0.37 -0.2
593,981 - B158DRAFT_0589 0.37 +0.1
594,027 + B158DRAFT_0589 0.42 -0.4
594,027 + B158DRAFT_0589 0.42 +0.2
594,035 - B158DRAFT_0589 0.43 +0.1
594,035 - B158DRAFT_0589 0.43 -0.2
594,035 - B158DRAFT_0589 0.43 +0.0
594,086 + B158DRAFT_0589 0.49 -0.2
594,094 - B158DRAFT_0589 0.50 +0.1
594,191 + B158DRAFT_0589 0.61 -0.1
594,229 + B158DRAFT_0589 0.66 -0.3
594,229 + B158DRAFT_0589 0.66 -1.1
594,237 - B158DRAFT_0589 0.66 -0.3
594,237 - B158DRAFT_0589 0.66 +0.1
594,237 - B158DRAFT_0589 0.66 -0.1
594,258 + B158DRAFT_0589 0.69 +0.1
594,266 + B158DRAFT_0589 0.70 -0.3
594,266 + B158DRAFT_0589 0.70 -0.3
594,266 + B158DRAFT_0589 0.70 -0.0
594,266 + B158DRAFT_0589 0.70 +0.7
594,268 - B158DRAFT_0589 0.70 +0.3
594,273 - B158DRAFT_0589 0.71 -2.6
594,274 - B158DRAFT_0589 0.71 +0.1
594,274 - B158DRAFT_0589 0.71 -0.0
594,274 - B158DRAFT_0589 0.71 -0.2
594,276 - B158DRAFT_0589 0.71 -0.5
594,333 - B158DRAFT_0589 0.77 -0.1
594,351 + B158DRAFT_0589 0.80 -0.0
594,352 - B158DRAFT_0589 0.80 -1.2
594,352 - B158DRAFT_0589 0.80 -1.1
594,359 - B158DRAFT_0589 0.80 +0.3
594,381 + B158DRAFT_0589 0.83 -1.5
594,396 + B158DRAFT_0589 0.85 +0.0
594,411 - B158DRAFT_0589 0.86 -0.2
594,481 - -0.2
594,485 + +0.2
594,522 + +0.1
594,530 - -0.2
594,612 + -0.1
594,612 + -0.6
594,612 + -0.0
594,612 + -0.0
594,620 - -0.0
594,620 - -0.2
594,620 - +0.1
594,620 - +0.3
594,620 - -1.3
594,620 - -0.4
594,620 - -0.3
594,620 - -0.4
594,622 + -0.1
594,646 - +0.6
594,780 - B158DRAFT_0590 0.23 -0.1
594,842 + B158DRAFT_0590 0.30 +0.3
594,844 + B158DRAFT_0590 0.30 -0.7
594,860 - B158DRAFT_0590 0.32 -0.2
594,879 - B158DRAFT_0590 0.34 -0.3
594,887 - B158DRAFT_0590 0.35 -0.3
594,887 - B158DRAFT_0590 0.35 -0.1
594,889 - B158DRAFT_0590 0.36 -0.3
595,086 + B158DRAFT_0590 0.59 -0.4
595,163 - B158DRAFT_0590 0.68 +0.1
595,185 - B158DRAFT_0590 0.70 -0.7
595,219 + B158DRAFT_0590 0.74 +0.2
595,233 - B158DRAFT_0590 0.76 +0.1
595,249 - B158DRAFT_0590 0.78 -0.0
595,328 + B158DRAFT_0590 0.87 +0.2
595,345 - B158DRAFT_0590 0.89 -0.2
595,447 + +0.1
595,504 - -0.5
595,504 - +0.1
595,504 - -0.4
595,511 - +0.2
595,516 + -0.4
595,516 + -0.1

Or see this region's nucleotide sequence