Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0004

Experiment: m.b. nitrate 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0003 and B158DRAFT_0004 are separated by 6 nucleotidesB158DRAFT_0004 and B158DRAFT_0005 are separated by 80 nucleotides B158DRAFT_0003: B158DRAFT_0003 - Membrane proteins related to metalloendopeptidases, at 3,477 to 4,988 _0003 B158DRAFT_0004: B158DRAFT_0004 - Predicted molecular chaperone distantly related to HSP70-fold metalloproteases, at 4,995 to 6,101 _0004 B158DRAFT_0005: B158DRAFT_0005 - diguanylate cyclase (GGDEF) domain, at 6,182 to 7,309 _0005 Position (kb) 4 5 6 7Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4.191 kb on + strand, within B158DRAFT_0003at 4.437 kb on - strand, within B158DRAFT_0003at 4.477 kb on - strand, within B158DRAFT_0003at 4.523 kb on - strand, within B158DRAFT_0003at 4.595 kb on - strand, within B158DRAFT_0003at 4.704 kb on + strand, within B158DRAFT_0003at 4.714 kb on + strand, within B158DRAFT_0003at 4.714 kb on + strand, within B158DRAFT_0003at 4.845 kb on + strandat 4.878 kb on + strandat 4.967 kb on - strandat 5.038 kb on + strandat 5.175 kb on - strand, within B158DRAFT_0004at 5.257 kb on + strand, within B158DRAFT_0004at 5.290 kb on + strand, within B158DRAFT_0004at 5.332 kb on - strand, within B158DRAFT_0004at 5.355 kb on + strand, within B158DRAFT_0004at 5.363 kb on - strand, within B158DRAFT_0004at 5.417 kb on + strand, within B158DRAFT_0004at 5.417 kb on + strand, within B158DRAFT_0004at 5.435 kb on - strand, within B158DRAFT_0004at 5.439 kb on + strand, within B158DRAFT_0004at 5.439 kb on + strand, within B158DRAFT_0004at 5.439 kb on + strand, within B158DRAFT_0004at 5.444 kb on + strand, within B158DRAFT_0004at 5.447 kb on - strand, within B158DRAFT_0004at 5.481 kb on + strand, within B158DRAFT_0004at 5.481 kb on + strand, within B158DRAFT_0004at 5.489 kb on - strand, within B158DRAFT_0004at 5.489 kb on - strand, within B158DRAFT_0004at 5.517 kb on + strand, within B158DRAFT_0004at 5.576 kb on - strand, within B158DRAFT_0004at 5.610 kb on - strand, within B158DRAFT_0004at 5.642 kb on - strand, within B158DRAFT_0004at 5.703 kb on + strand, within B158DRAFT_0004at 5.703 kb on + strand, within B158DRAFT_0004at 5.711 kb on - strand, within B158DRAFT_0004at 5.711 kb on - strand, within B158DRAFT_0004at 5.736 kb on - strand, within B158DRAFT_0004at 5.760 kb on - strand, within B158DRAFT_0004at 5.857 kb on - strand, within B158DRAFT_0004at 5.866 kb on + strand, within B158DRAFT_0004at 5.868 kb on + strand, within B158DRAFT_0004at 5.874 kb on - strand, within B158DRAFT_0004at 5.874 kb on - strand, within B158DRAFT_0004at 5.874 kb on - strand, within B158DRAFT_0004at 5.876 kb on - strand, within B158DRAFT_0004at 5.876 kb on - strand, within B158DRAFT_0004at 5.876 kb on - strand, within B158DRAFT_0004at 5.958 kb on - strand, within B158DRAFT_0004at 5.970 kb on + strand, within B158DRAFT_0004at 5.970 kb on + strand, within B158DRAFT_0004at 5.978 kb on - strand, within B158DRAFT_0004at 5.980 kb on + strand, within B158DRAFT_0004at 5.988 kb on - strand, within B158DRAFT_0004at 6.002 kb on - strandat 6.004 kb on + strandat 6.012 kb on - strandat 6.014 kb on + strandat 6.019 kb on + strandat 6.070 kb on + strandat 6.203 kb on - strandat 6.224 kb on + strandat 6.287 kb on + strandat 6.287 kb on + strandat 6.311 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.330 kb on + strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.338 kb on - strand, within B158DRAFT_0005at 6.340 kb on + strand, within B158DRAFT_0005at 6.421 kb on + strand, within B158DRAFT_0005at 6.449 kb on + strand, within B158DRAFT_0005at 6.449 kb on + strand, within B158DRAFT_0005at 6.464 kb on + strand, within B158DRAFT_0005at 6.464 kb on + strand, within B158DRAFT_0005at 6.464 kb on + strand, within B158DRAFT_0005at 6.464 kb on + strand, within B158DRAFT_0005at 6.464 kb on - strand, within B158DRAFT_0005at 6.464 kb on - strand, within B158DRAFT_0005at 6.472 kb on - strand, within B158DRAFT_0005at 6.472 kb on - strand, within B158DRAFT_0005at 6.545 kb on + strand, within B158DRAFT_0005at 6.545 kb on + strand, within B158DRAFT_0005at 6.545 kb on + strand, within B158DRAFT_0005at 6.553 kb on - strand, within B158DRAFT_0005at 6.553 kb on - strand, within B158DRAFT_0005at 6.553 kb on - strand, within B158DRAFT_0005at 6.592 kb on - strand, within B158DRAFT_0005at 6.664 kb on + strand, within B158DRAFT_0005at 6.838 kb on - strand, within B158DRAFT_0005at 6.962 kb on + strand, within B158DRAFT_0005at 6.962 kb on + strand, within B158DRAFT_0005at 6.970 kb on - strand, within B158DRAFT_0005at 6.988 kb on + strand, within B158DRAFT_0005at 7.051 kb on + strand, within B158DRAFT_0005at 7.051 kb on + strand, within B158DRAFT_0005at 7.051 kb on + strand, within B158DRAFT_0005at 7.072 kb on - strand, within B158DRAFT_0005

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. nitrate 200 mM
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4,191 + B158DRAFT_0003 0.47 +0.3
4,437 - B158DRAFT_0003 0.63 +0.3
4,477 - B158DRAFT_0003 0.66 -0.1
4,523 - B158DRAFT_0003 0.69 -1.6
4,595 - B158DRAFT_0003 0.74 -0.1
4,704 + B158DRAFT_0003 0.81 +0.1
4,714 + B158DRAFT_0003 0.82 -0.1
4,714 + B158DRAFT_0003 0.82 +0.2
4,845 + +0.8
4,878 + -1.1
4,967 - -1.6
5,038 + -2.7
5,175 - B158DRAFT_0004 0.16 -0.5
5,257 + B158DRAFT_0004 0.24 -2.8
5,290 + B158DRAFT_0004 0.27 -2.6
5,332 - B158DRAFT_0004 0.30 -0.8
5,355 + B158DRAFT_0004 0.33 -0.1
5,363 - B158DRAFT_0004 0.33 -1.1
5,417 + B158DRAFT_0004 0.38 -2.6
5,417 + B158DRAFT_0004 0.38 -1.9
5,435 - B158DRAFT_0004 0.40 -2.1
5,439 + B158DRAFT_0004 0.40 -3.8
5,439 + B158DRAFT_0004 0.40 -1.3
5,439 + B158DRAFT_0004 0.40 -2.1
5,444 + B158DRAFT_0004 0.41 -2.4
5,447 - B158DRAFT_0004 0.41 -1.9
5,481 + B158DRAFT_0004 0.44 -1.6
5,481 + B158DRAFT_0004 0.44 -1.6
5,489 - B158DRAFT_0004 0.45 -2.0
5,489 - B158DRAFT_0004 0.45 -2.1
5,517 + B158DRAFT_0004 0.47 -1.9
5,576 - B158DRAFT_0004 0.52 -2.0
5,610 - B158DRAFT_0004 0.56 -3.1
5,642 - B158DRAFT_0004 0.58 -1.2
5,703 + B158DRAFT_0004 0.64 -1.3
5,703 + B158DRAFT_0004 0.64 -2.0
5,711 - B158DRAFT_0004 0.65 -0.8
5,711 - B158DRAFT_0004 0.65 -2.5
5,736 - B158DRAFT_0004 0.67 -1.8
5,760 - B158DRAFT_0004 0.69 -3.3
5,857 - B158DRAFT_0004 0.78 -1.5
5,866 + B158DRAFT_0004 0.79 -1.1
5,868 + B158DRAFT_0004 0.79 -1.3
5,874 - B158DRAFT_0004 0.79 -3.1
5,874 - B158DRAFT_0004 0.79 -2.0
5,874 - B158DRAFT_0004 0.79 -1.5
5,876 - B158DRAFT_0004 0.80 -2.0
5,876 - B158DRAFT_0004 0.80 -4.3
5,876 - B158DRAFT_0004 0.80 -2.3
5,958 - B158DRAFT_0004 0.87 -1.2
5,970 + B158DRAFT_0004 0.88 -2.5
5,970 + B158DRAFT_0004 0.88 -1.9
5,978 - B158DRAFT_0004 0.89 -1.8
5,980 + B158DRAFT_0004 0.89 -1.8
5,988 - B158DRAFT_0004 0.90 -1.8
6,002 - -2.4
6,004 + -3.3
6,012 - -2.6
6,014 + -1.3
6,019 + -2.8
6,070 + -4.3
6,203 - -0.5
6,224 + -0.1
6,287 + -0.9
6,287 + -0.7
6,311 + B158DRAFT_0005 0.11 -0.3
6,330 + B158DRAFT_0005 0.13 -0.1
6,330 + B158DRAFT_0005 0.13 -1.1
6,330 + B158DRAFT_0005 0.13 +0.4
6,330 + B158DRAFT_0005 0.13 -0.1
6,330 + B158DRAFT_0005 0.13 -3.3
6,330 + B158DRAFT_0005 0.13 -0.4
6,330 + B158DRAFT_0005 0.13 -0.7
6,338 - B158DRAFT_0005 0.14 -0.3
6,338 - B158DRAFT_0005 0.14 -0.0
6,338 - B158DRAFT_0005 0.14 -0.2
6,338 - B158DRAFT_0005 0.14 +0.0
6,338 - B158DRAFT_0005 0.14 -0.5
6,338 - B158DRAFT_0005 0.14 -0.5
6,340 + B158DRAFT_0005 0.14 -0.3
6,421 + B158DRAFT_0005 0.21 +0.2
6,449 + B158DRAFT_0005 0.24 -0.1
6,449 + B158DRAFT_0005 0.24 +0.1
6,464 + B158DRAFT_0005 0.25 -0.2
6,464 + B158DRAFT_0005 0.25 -0.4
6,464 + B158DRAFT_0005 0.25 -0.0
6,464 + B158DRAFT_0005 0.25 -0.1
6,464 - B158DRAFT_0005 0.25 +0.3
6,464 - B158DRAFT_0005 0.25 -0.4
6,472 - B158DRAFT_0005 0.26 -0.1
6,472 - B158DRAFT_0005 0.26 -0.1
6,545 + B158DRAFT_0005 0.32 +0.0
6,545 + B158DRAFT_0005 0.32 -1.1
6,545 + B158DRAFT_0005 0.32 -0.1
6,553 - B158DRAFT_0005 0.33 +0.4
6,553 - B158DRAFT_0005 0.33 -0.0
6,553 - B158DRAFT_0005 0.33 +0.0
6,592 - B158DRAFT_0005 0.36 -0.2
6,664 + B158DRAFT_0005 0.43 +0.2
6,838 - B158DRAFT_0005 0.58 +0.2
6,962 + B158DRAFT_0005 0.69 -0.3
6,962 + B158DRAFT_0005 0.69 -0.1
6,970 - B158DRAFT_0005 0.70 +0.9
6,988 + B158DRAFT_0005 0.71 -0.3
7,051 + B158DRAFT_0005 0.77 -0.4
7,051 + B158DRAFT_0005 0.77 +0.2
7,051 + B158DRAFT_0005 0.77 -0.5
7,072 - B158DRAFT_0005 0.79 -0.5

Or see this region's nucleotide sequence