Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2421

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2419 and B158DRAFT_2420 overlap by 4 nucleotidesB158DRAFT_2420 and B158DRAFT_2421 are separated by 4 nucleotidesB158DRAFT_2421 and B158DRAFT_2422 are separated by 11 nucleotides B158DRAFT_2419: B158DRAFT_2419 - type IV pilus modification protein PilV, at 590,559 to 591,152 _2419 B158DRAFT_2420: B158DRAFT_2420 - prepilin-type N-terminal cleavage/methylation domain, at 591,149 to 591,949 _2420 B158DRAFT_2421: B158DRAFT_2421 - hypothetical protein, at 591,954 to 592,511 _2421 B158DRAFT_2422: B158DRAFT_2422 - Tfp pilus assembly protein, tip-associated adhesin PilY1, at 592,523 to 595,474 _2422 Position (kb) 591 592 593Strain fitness (log2 ratio) -1 0 1 2at 591.006 kb on - strand, within B158DRAFT_2419at 591.246 kb on - strand, within B158DRAFT_2420at 591.359 kb on + strand, within B158DRAFT_2420at 591.367 kb on - strand, within B158DRAFT_2420at 591.380 kb on + strand, within B158DRAFT_2420at 591.421 kb on + strand, within B158DRAFT_2420at 591.520 kb on + strand, within B158DRAFT_2420at 591.522 kb on + strand, within B158DRAFT_2420at 591.522 kb on + strand, within B158DRAFT_2420at 591.522 kb on + strand, within B158DRAFT_2420at 591.530 kb on - strand, within B158DRAFT_2420at 591.530 kb on - strand, within B158DRAFT_2420at 591.543 kb on - strand, within B158DRAFT_2420at 591.612 kb on - strand, within B158DRAFT_2420at 591.842 kb on + strand, within B158DRAFT_2420at 591.842 kb on + strand, within B158DRAFT_2420at 591.842 kb on + strand, within B158DRAFT_2420at 591.850 kb on - strand, within B158DRAFT_2420at 591.851 kb on - strand, within B158DRAFT_2420at 592.084 kb on + strand, within B158DRAFT_2421at 592.157 kb on - strand, within B158DRAFT_2421at 592.226 kb on - strand, within B158DRAFT_2421at 592.258 kb on + strand, within B158DRAFT_2421at 592.271 kb on + strand, within B158DRAFT_2421at 592.343 kb on - strand, within B158DRAFT_2421at 592.483 kb on - strandat 592.506 kb on + strandat 592.563 kb on - strandat 592.621 kb on + strandat 592.629 kb on - strandat 592.629 kb on - strandat 592.684 kb on + strandat 592.700 kb on - strandat 592.904 kb on - strand, within B158DRAFT_2422at 592.963 kb on + strand, within B158DRAFT_2422at 592.971 kb on - strand, within B158DRAFT_2422at 593.201 kb on - strand, within B158DRAFT_2422at 593.201 kb on - strand, within B158DRAFT_2422at 593.201 kb on - strand, within B158DRAFT_2422at 593.211 kb on - strand, within B158DRAFT_2422at 593.211 kb on - strand, within B158DRAFT_2422at 593.326 kb on + strand, within B158DRAFT_2422

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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591,006 - B158DRAFT_2419 0.75 -0.0
591,246 - B158DRAFT_2420 0.12 +1.5
591,359 + B158DRAFT_2420 0.26 +0.0
591,367 - B158DRAFT_2420 0.27 +0.6
591,380 + B158DRAFT_2420 0.29 +0.5
591,421 + B158DRAFT_2420 0.34 -0.2
591,520 + B158DRAFT_2420 0.46 -1.3
591,522 + B158DRAFT_2420 0.47 +0.3
591,522 + B158DRAFT_2420 0.47 -1.2
591,522 + B158DRAFT_2420 0.47 +1.9
591,530 - B158DRAFT_2420 0.48 +0.2
591,530 - B158DRAFT_2420 0.48 -0.8
591,543 - B158DRAFT_2420 0.49 +0.0
591,612 - B158DRAFT_2420 0.58 +0.1
591,842 + B158DRAFT_2420 0.87 -0.8
591,842 + B158DRAFT_2420 0.87 -1.0
591,842 + B158DRAFT_2420 0.87 +1.1
591,850 - B158DRAFT_2420 0.88 +0.6
591,851 - B158DRAFT_2420 0.88 +1.0
592,084 + B158DRAFT_2421 0.23 +0.3
592,157 - B158DRAFT_2421 0.36 -0.1
592,226 - B158DRAFT_2421 0.49 +0.2
592,258 + B158DRAFT_2421 0.54 +0.0
592,271 + B158DRAFT_2421 0.57 +0.1
592,343 - B158DRAFT_2421 0.70 +0.0
592,483 - -0.8
592,506 + +0.1
592,563 - +0.3
592,621 + +0.0
592,629 - -0.2
592,629 - +0.5
592,684 + +0.4
592,700 - +0.1
592,904 - B158DRAFT_2422 0.13 -0.4
592,963 + B158DRAFT_2422 0.15 +0.7
592,971 - B158DRAFT_2422 0.15 +0.2
593,201 - B158DRAFT_2422 0.23 +0.2
593,201 - B158DRAFT_2422 0.23 +0.3
593,201 - B158DRAFT_2422 0.23 -1.2
593,211 - B158DRAFT_2422 0.23 +0.2
593,211 - B158DRAFT_2422 0.23 +0.2
593,326 + B158DRAFT_2422 0.27 -0.4

Or see this region's nucleotide sequence