Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2060

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2058 and B158DRAFT_2059 are separated by 7 nucleotidesB158DRAFT_2059 and B158DRAFT_2060 overlap by 4 nucleotidesB158DRAFT_2060 and B158DRAFT_2061 are separated by 250 nucleotides B158DRAFT_2058: B158DRAFT_2058 - tRNA_Gln_TTG, at 193,273 to 193,347 _2058 B158DRAFT_2059: B158DRAFT_2059 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC 2.7.1.148), at 193,355 to 194,230 _2059 B158DRAFT_2060: B158DRAFT_2060 - outer membrane lipoprotein LolB, at 194,227 to 194,853 _2060 B158DRAFT_2061: B158DRAFT_2061 - hypothetical protein, at 195,104 to 197,074 _2061 Position (kb) 194 195Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 194.183 kb on - strandat 194.192 kb on - strandat 194.192 kb on - strandat 194.192 kb on - strandat 194.192 kb on - strandat 194.192 kb on - strandat 194.192 kb on - strandat 194.241 kb on - strandat 194.246 kb on - strandat 194.246 kb on - strandat 194.905 kb on - strandat 194.905 kb on - strandat 194.905 kb on - strandat 194.961 kb on + strandat 194.961 kb on + strandat 194.969 kb on + strandat 194.969 kb on - strandat 194.971 kb on - strandat 194.984 kb on + strandat 195.029 kb on - strandat 195.037 kb on - strandat 195.045 kb on - strandat 195.059 kb on + strandat 195.064 kb on + strandat 195.064 kb on + strandat 195.064 kb on + strandat 195.064 kb on + strandat 195.064 kb on + strandat 195.069 kb on + strandat 195.070 kb on + strandat 195.070 kb on + strandat 195.070 kb on + strandat 195.070 kb on + strandat 195.070 kb on + strandat 195.070 kb on + strandat 195.070 kb on + strandat 195.072 kb on - strandat 195.077 kb on - strandat 195.078 kb on - strandat 195.078 kb on - strandat 195.078 kb on - strandat 195.078 kb on - strandat 195.078 kb on - strandat 195.106 kb on + strandat 195.106 kb on + strandat 195.121 kb on - strandat 195.150 kb on + strandat 195.158 kb on + strandat 195.222 kb on + strandat 195.230 kb on - strandat 195.234 kb on + strandat 195.242 kb on - strandat 195.244 kb on + strandat 195.252 kb on + strandat 195.293 kb on + strandat 195.323 kb on + strand, within B158DRAFT_2061at 195.323 kb on + strand, within B158DRAFT_2061at 195.323 kb on + strand, within B158DRAFT_2061at 195.323 kb on + strand, within B158DRAFT_2061at 195.323 kb on + strand, within B158DRAFT_2061at 195.323 kb on + strand, within B158DRAFT_2061at 195.323 kb on + strand, within B158DRAFT_2061at 195.323 kb on + strand, within B158DRAFT_2061at 195.331 kb on - strand, within B158DRAFT_2061at 195.331 kb on - strand, within B158DRAFT_2061at 195.331 kb on - strand, within B158DRAFT_2061at 195.331 kb on - strand, within B158DRAFT_2061at 195.331 kb on - strand, within B158DRAFT_2061at 195.331 kb on - strand, within B158DRAFT_2061at 195.344 kb on + strand, within B158DRAFT_2061at 195.419 kb on + strand, within B158DRAFT_2061at 195.443 kb on - strand, within B158DRAFT_2061at 195.471 kb on + strand, within B158DRAFT_2061at 195.479 kb on + strand, within B158DRAFT_2061at 195.479 kb on - strand, within B158DRAFT_2061at 195.479 kb on - strand, within B158DRAFT_2061at 195.479 kb on - strand, within B158DRAFT_2061at 195.479 kb on - strand, within B158DRAFT_2061at 195.487 kb on - strand, within B158DRAFT_2061at 195.487 kb on - strand, within B158DRAFT_2061at 195.487 kb on - strand, within B158DRAFT_2061at 195.492 kb on - strand, within B158DRAFT_2061at 195.499 kb on - strand, within B158DRAFT_2061at 195.519 kb on - strand, within B158DRAFT_2061at 195.549 kb on + strand, within B158DRAFT_2061at 195.602 kb on + strand, within B158DRAFT_2061at 195.610 kb on - strand, within B158DRAFT_2061at 195.657 kb on - strand, within B158DRAFT_2061at 195.687 kb on + strand, within B158DRAFT_2061at 195.687 kb on + strand, within B158DRAFT_2061at 195.690 kb on - strand, within B158DRAFT_2061at 195.722 kb on + strand, within B158DRAFT_2061

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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194,183 - -3.0
194,192 - -0.6
194,192 - -1.0
194,192 - -2.5
194,192 - -2.8
194,192 - -1.7
194,192 - -1.7
194,241 - +0.1
194,246 - -0.7
194,246 - -0.8
194,905 - -0.2
194,905 - -0.2
194,905 - -0.7
194,961 + -0.2
194,961 + +0.3
194,969 + -0.7
194,969 - -1.0
194,971 - -0.9
194,984 + -0.1
195,029 - -0.7
195,037 - +0.8
195,045 - -0.2
195,059 + +0.1
195,064 + -1.0
195,064 + +0.5
195,064 + -0.5
195,064 + +0.3
195,064 + +0.2
195,069 + +0.5
195,070 + -0.1
195,070 + -0.1
195,070 + -0.1
195,070 + -0.3
195,070 + -0.2
195,070 + +0.7
195,070 + +0.9
195,072 - +0.3
195,077 - +0.3
195,078 - +0.2
195,078 - +0.2
195,078 - -0.5
195,078 - +0.1
195,078 - +0.1
195,106 + -0.8
195,106 + -1.4
195,121 - -0.3
195,150 + -4.1
195,158 + -1.5
195,222 + -0.3
195,230 - -0.0
195,234 + -0.9
195,242 - -1.5
195,244 + -0.7
195,252 + -0.3
195,293 + -0.8
195,323 + B158DRAFT_2061 0.11 -1.5
195,323 + B158DRAFT_2061 0.11 -1.7
195,323 + B158DRAFT_2061 0.11 -0.5
195,323 + B158DRAFT_2061 0.11 -1.1
195,323 + B158DRAFT_2061 0.11 -1.6
195,323 + B158DRAFT_2061 0.11 -0.8
195,323 + B158DRAFT_2061 0.11 -1.5
195,323 + B158DRAFT_2061 0.11 -1.4
195,331 - B158DRAFT_2061 0.12 -2.4
195,331 - B158DRAFT_2061 0.12 -1.4
195,331 - B158DRAFT_2061 0.12 -2.5
195,331 - B158DRAFT_2061 0.12 -1.0
195,331 - B158DRAFT_2061 0.12 -2.3
195,331 - B158DRAFT_2061 0.12 -1.0
195,344 + B158DRAFT_2061 0.12 -0.4
195,419 + B158DRAFT_2061 0.16 -2.4
195,443 - B158DRAFT_2061 0.17 -2.1
195,471 + B158DRAFT_2061 0.19 -2.0
195,479 + B158DRAFT_2061 0.19 -1.9
195,479 - B158DRAFT_2061 0.19 -0.6
195,479 - B158DRAFT_2061 0.19 -0.7
195,479 - B158DRAFT_2061 0.19 -1.2
195,479 - B158DRAFT_2061 0.19 -0.7
195,487 - B158DRAFT_2061 0.19 -1.8
195,487 - B158DRAFT_2061 0.19 -3.7
195,487 - B158DRAFT_2061 0.19 -1.1
195,492 - B158DRAFT_2061 0.20 -1.7
195,499 - B158DRAFT_2061 0.20 -2.4
195,519 - B158DRAFT_2061 0.21 -2.4
195,549 + B158DRAFT_2061 0.23 -1.6
195,602 + B158DRAFT_2061 0.25 -0.5
195,610 - B158DRAFT_2061 0.26 -0.6
195,657 - B158DRAFT_2061 0.28 -1.3
195,687 + B158DRAFT_2061 0.30 -2.8
195,687 + B158DRAFT_2061 0.30 -1.7
195,690 - B158DRAFT_2061 0.30 -0.3
195,722 + B158DRAFT_2061 0.31 -1.6

Or see this region's nucleotide sequence