Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1839

Experiment: marine broth

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1837 and B158DRAFT_1838 are separated by 45 nucleotidesB158DRAFT_1838 and B158DRAFT_1839 are separated by 1 nucleotidesB158DRAFT_1839 and B158DRAFT_1840 are separated by 1 nucleotidesB158DRAFT_1840 and B158DRAFT_1841 are separated by 33 nucleotides B158DRAFT_1837: B158DRAFT_1837 - ribosomal large subunit pseudouridine synthase E (EC 5.4.99.-), at 1,936,773 to 1,937,378 _1837 B158DRAFT_1838: B158DRAFT_1838 - ADP-ribose pyrophosphatase, at 1,937,424 to 1,937,933 _1838 B158DRAFT_1839: B158DRAFT_1839 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, at 1,937,935 to 1,939,038 _1839 B158DRAFT_1840: B158DRAFT_1840 - Uncharacterized protein involved in purine metabolism, at 1,939,040 to 1,939,654 _1840 B158DRAFT_1841: B158DRAFT_1841 - hypothetical protein, at 1,939,688 to 1,940,557 _1841 Position (kb) 1937 1938 1939 1940Strain fitness (log2 ratio) -2 -1 0 1 2at 1936.950 kb on - strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1936.997 kb on + strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.005 kb on - strand, within B158DRAFT_1837at 1937.038 kb on + strand, within B158DRAFT_1837at 1937.038 kb on + strand, within B158DRAFT_1837at 1937.041 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.046 kb on - strand, within B158DRAFT_1837at 1937.080 kb on + strand, within B158DRAFT_1837at 1937.098 kb on + strand, within B158DRAFT_1837at 1937.098 kb on + strand, within B158DRAFT_1837at 1937.098 kb on + strand, within B158DRAFT_1837at 1937.106 kb on - strand, within B158DRAFT_1837at 1937.106 kb on - strand, within B158DRAFT_1837at 1937.106 kb on - strand, within B158DRAFT_1837at 1937.166 kb on + strand, within B158DRAFT_1837at 1937.194 kb on - strand, within B158DRAFT_1837at 1937.214 kb on + strand, within B158DRAFT_1837at 1937.222 kb on - strand, within B158DRAFT_1837at 1937.222 kb on - strand, within B158DRAFT_1837at 1937.229 kb on + strand, within B158DRAFT_1837at 1937.247 kb on + strand, within B158DRAFT_1837at 1937.323 kb on - strandat 1937.327 kb on + strandat 1937.332 kb on + strandat 1937.396 kb on + strandat 1937.629 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.783 kb on + strand, within B158DRAFT_1838at 1937.816 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.829 kb on + strand, within B158DRAFT_1838at 1937.848 kb on + strand, within B158DRAFT_1838at 1937.848 kb on + strand, within B158DRAFT_1838at 1937.858 kb on + strand, within B158DRAFT_1838at 1937.866 kb on + strand, within B158DRAFT_1838at 1937.887 kb on + strandat 1939.125 kb on - strand, within B158DRAFT_1840at 1939.350 kb on - strand, within B158DRAFT_1840at 1939.391 kb on - strand, within B158DRAFT_1840at 1939.403 kb on + strand, within B158DRAFT_1840at 1939.411 kb on - strand, within B158DRAFT_1840at 1939.412 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.508 kb on - strand, within B158DRAFT_1840at 1939.568 kb on - strand, within B158DRAFT_1840at 1939.568 kb on - strand, within B158DRAFT_1840at 1939.694 kb on - strandat 1939.712 kb on - strandat 1939.770 kb on + strandat 1939.780 kb on + strand, within B158DRAFT_1841at 1939.865 kb on + strand, within B158DRAFT_1841at 1939.883 kb on - strand, within B158DRAFT_1841at 1939.891 kb on + strand, within B158DRAFT_1841at 1939.891 kb on + strand, within B158DRAFT_1841at 1939.891 kb on + strand, within B158DRAFT_1841at 1939.891 kb on + strand, within B158DRAFT_1841at 1939.891 kb on + strand, within B158DRAFT_1841at 1939.897 kb on + strand, within B158DRAFT_1841at 1939.897 kb on + strand, within B158DRAFT_1841at 1939.899 kb on - strand, within B158DRAFT_1841at 1939.899 kb on - strand, within B158DRAFT_1841at 1939.899 kb on - strand, within B158DRAFT_1841at 1939.899 kb on - strand, within B158DRAFT_1841at 1939.901 kb on + strand, within B158DRAFT_1841at 1940.038 kb on + strand, within B158DRAFT_1841

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Per-strain Table

Position Strand Gene LocusTag Fraction marine broth
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1,936,950 - B158DRAFT_1837 0.29 +0.0
1,936,997 + B158DRAFT_1837 0.37 -0.9
1,936,997 + B158DRAFT_1837 0.37 -0.0
1,936,997 + B158DRAFT_1837 0.37 +1.3
1,936,997 + B158DRAFT_1837 0.37 +0.4
1,936,997 + B158DRAFT_1837 0.37 -0.5
1,937,005 - B158DRAFT_1837 0.38 -1.5
1,937,005 - B158DRAFT_1837 0.38 -0.2
1,937,005 - B158DRAFT_1837 0.38 -0.2
1,937,005 - B158DRAFT_1837 0.38 -0.8
1,937,005 - B158DRAFT_1837 0.38 -0.6
1,937,005 - B158DRAFT_1837 0.38 -0.0
1,937,005 - B158DRAFT_1837 0.38 +0.8
1,937,038 + B158DRAFT_1837 0.44 -1.8
1,937,038 + B158DRAFT_1837 0.44 +0.2
1,937,041 - B158DRAFT_1837 0.44 -0.4
1,937,046 - B158DRAFT_1837 0.45 +0.3
1,937,046 - B158DRAFT_1837 0.45 +0.2
1,937,046 - B158DRAFT_1837 0.45 +0.5
1,937,046 - B158DRAFT_1837 0.45 -0.4
1,937,046 - B158DRAFT_1837 0.45 -1.0
1,937,080 + B158DRAFT_1837 0.51 -0.2
1,937,098 + B158DRAFT_1837 0.54 +0.2
1,937,098 + B158DRAFT_1837 0.54 -0.0
1,937,098 + B158DRAFT_1837 0.54 -0.6
1,937,106 - B158DRAFT_1837 0.55 -0.3
1,937,106 - B158DRAFT_1837 0.55 -0.1
1,937,106 - B158DRAFT_1837 0.55 +0.1
1,937,166 + B158DRAFT_1837 0.65 -1.4
1,937,194 - B158DRAFT_1837 0.69 -0.1
1,937,214 + B158DRAFT_1837 0.73 -0.1
1,937,222 - B158DRAFT_1837 0.74 -0.4
1,937,222 - B158DRAFT_1837 0.74 +0.5
1,937,229 + B158DRAFT_1837 0.75 -0.1
1,937,247 + B158DRAFT_1837 0.78 -0.1
1,937,323 - +1.9
1,937,327 + -0.1
1,937,332 + +0.3
1,937,396 + -0.7
1,937,629 + B158DRAFT_1838 0.40 -0.1
1,937,783 + B158DRAFT_1838 0.70 +0.6
1,937,783 + B158DRAFT_1838 0.70 -0.5
1,937,783 + B158DRAFT_1838 0.70 -0.3
1,937,783 + B158DRAFT_1838 0.70 -0.0
1,937,783 + B158DRAFT_1838 0.70 +0.4
1,937,783 + B158DRAFT_1838 0.70 -0.4
1,937,783 + B158DRAFT_1838 0.70 -0.1
1,937,783 + B158DRAFT_1838 0.70 +0.1
1,937,783 + B158DRAFT_1838 0.70 +0.2
1,937,816 + B158DRAFT_1838 0.77 +0.0
1,937,829 + B158DRAFT_1838 0.79 +0.4
1,937,829 + B158DRAFT_1838 0.79 +0.2
1,937,829 + B158DRAFT_1838 0.79 -0.4
1,937,829 + B158DRAFT_1838 0.79 +0.0
1,937,829 + B158DRAFT_1838 0.79 +0.1
1,937,829 + B158DRAFT_1838 0.79 -0.6
1,937,848 + B158DRAFT_1838 0.83 -0.8
1,937,848 + B158DRAFT_1838 0.83 -0.2
1,937,858 + B158DRAFT_1838 0.85 -0.3
1,937,866 + B158DRAFT_1838 0.87 +0.1
1,937,887 + -0.2
1,939,125 - B158DRAFT_1840 0.14 -0.6
1,939,350 - B158DRAFT_1840 0.50 -0.0
1,939,391 - B158DRAFT_1840 0.57 +0.1
1,939,403 + B158DRAFT_1840 0.59 -0.3
1,939,411 - B158DRAFT_1840 0.60 -0.3
1,939,412 - B158DRAFT_1840 0.60 +0.0
1,939,508 - B158DRAFT_1840 0.76 +0.1
1,939,508 - B158DRAFT_1840 0.76 +0.9
1,939,508 - B158DRAFT_1840 0.76 +0.4
1,939,508 - B158DRAFT_1840 0.76 +0.2
1,939,508 - B158DRAFT_1840 0.76 -0.1
1,939,508 - B158DRAFT_1840 0.76 +1.1
1,939,568 - B158DRAFT_1840 0.86 -0.1
1,939,568 - B158DRAFT_1840 0.86 +0.4
1,939,694 - -0.7
1,939,712 - -2.4
1,939,770 + -0.2
1,939,780 + B158DRAFT_1841 0.11 +0.1
1,939,865 + B158DRAFT_1841 0.20 -0.8
1,939,883 - B158DRAFT_1841 0.22 +0.4
1,939,891 + B158DRAFT_1841 0.23 -0.2
1,939,891 + B158DRAFT_1841 0.23 -0.4
1,939,891 + B158DRAFT_1841 0.23 +1.0
1,939,891 + B158DRAFT_1841 0.23 +0.1
1,939,891 + B158DRAFT_1841 0.23 +0.2
1,939,897 + B158DRAFT_1841 0.24 -0.8
1,939,897 + B158DRAFT_1841 0.24 +0.1
1,939,899 - B158DRAFT_1841 0.24 -0.7
1,939,899 - B158DRAFT_1841 0.24 +0.3
1,939,899 - B158DRAFT_1841 0.24 +0.5
1,939,899 - B158DRAFT_1841 0.24 -1.0
1,939,901 + B158DRAFT_1841 0.24 +0.0
1,940,038 + B158DRAFT_1841 0.40 -0.4

Or see this region's nucleotide sequence