Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1727 and B158DRAFT_1728 are separated by 221 nucleotides B158DRAFT_1728 and B158DRAFT_1729 are separated by 102 nucleotides
B158DRAFT_1727: B158DRAFT_1727 - ribonucleoside-triphosphate reductase class III catalytic subunit (EC 1.17.4.2), at 1,800,769 to 1,802,808
_1727
B158DRAFT_1728: B158DRAFT_1728 - Uncharacterized conserved protein, at 1,803,030 to 1,803,401
_1728
B158DRAFT_1729: B158DRAFT_1729 - Glutamate decarboxylase and related PLP-dependent proteins, at 1,803,504 to 1,805,483
_1729
Position (kb)
1803
1804 Strain fitness (log2 ratio)
-1
0
1 at 1802.176 kb on - strand, within B158DRAFT_1727 at 1802.220 kb on - strand, within B158DRAFT_1727 at 1802.220 kb on - strand, within B158DRAFT_1727 at 1802.261 kb on + strand, within B158DRAFT_1727 at 1802.350 kb on - strand, within B158DRAFT_1727 at 1802.409 kb on - strand, within B158DRAFT_1727 at 1802.409 kb on - strand, within B158DRAFT_1727 at 1802.419 kb on - strand, within B158DRAFT_1727 at 1802.431 kb on + strand, within B158DRAFT_1727 at 1802.454 kb on - strand, within B158DRAFT_1727 at 1802.564 kb on + strand, within B158DRAFT_1727 at 1802.589 kb on - strand, within B158DRAFT_1727 at 1802.710 kb on - strand at 1802.710 kb on - strand at 1802.780 kb on + strand at 1802.948 kb on + strand at 1802.975 kb on + strand at 1802.990 kb on - strand at 1802.990 kb on - strand at 1803.073 kb on + strand, within B158DRAFT_1728 at 1803.081 kb on - strand, within B158DRAFT_1728 at 1803.081 kb on - strand, within B158DRAFT_1728 at 1803.106 kb on - strand, within B158DRAFT_1728 at 1803.226 kb on + strand, within B158DRAFT_1728 at 1803.228 kb on + strand, within B158DRAFT_1728 at 1803.228 kb on + strand, within B158DRAFT_1728 at 1803.228 kb on + strand, within B158DRAFT_1728 at 1803.228 kb on + strand, within B158DRAFT_1728 at 1803.228 kb on + strand, within B158DRAFT_1728 at 1803.236 kb on - strand, within B158DRAFT_1728 at 1803.236 kb on - strand, within B158DRAFT_1728 at 1803.236 kb on - strand, within B158DRAFT_1728 at 1803.236 kb on - strand, within B158DRAFT_1728 at 1803.236 kb on - strand, within B158DRAFT_1728 at 1803.236 kb on - strand, within B158DRAFT_1728 at 1803.236 kb on - strand, within B158DRAFT_1728 at 1803.240 kb on + strand, within B158DRAFT_1728 at 1803.271 kb on + strand, within B158DRAFT_1728 at 1803.273 kb on - strand, within B158DRAFT_1728 at 1803.279 kb on - strand, within B158DRAFT_1728 at 1803.279 kb on - strand, within B158DRAFT_1728 at 1803.279 kb on - strand, within B158DRAFT_1728 at 1803.279 kb on - strand, within B158DRAFT_1728 at 1803.279 kb on - strand, within B158DRAFT_1728 at 1803.279 kb on - strand, within B158DRAFT_1728 at 1803.304 kb on + strand, within B158DRAFT_1728 at 1803.320 kb on + strand, within B158DRAFT_1728 at 1803.467 kb on + strand at 1803.538 kb on - strand at 1803.572 kb on + strand at 1803.572 kb on + strand at 1803.572 kb on + strand at 1803.572 kb on + strand at 1803.580 kb on - strand at 1803.580 kb on - strand at 1803.664 kb on + strand at 1803.672 kb on - strand at 1803.715 kb on - strand, within B158DRAFT_1729 at 1803.778 kb on - strand, within B158DRAFT_1729 at 1803.820 kb on - strand, within B158DRAFT_1729 at 1803.820 kb on - strand, within B158DRAFT_1729 at 1803.896 kb on - strand, within B158DRAFT_1729 at 1803.973 kb on - strand, within B158DRAFT_1729 at 1803.973 kb on - strand, within B158DRAFT_1729 at 1804.075 kb on + strand, within B158DRAFT_1729 at 1804.075 kb on + strand, within B158DRAFT_1729 at 1804.083 kb on - strand, within B158DRAFT_1729 at 1804.142 kb on + strand, within B158DRAFT_1729 at 1804.207 kb on + strand, within B158DRAFT_1729 at 1804.215 kb on - strand, within B158DRAFT_1729 at 1804.215 kb on - strand, within B158DRAFT_1729 at 1804.243 kb on + strand, within B158DRAFT_1729 at 1804.282 kb on - strand, within B158DRAFT_1729 at 1804.291 kb on + strand, within B158DRAFT_1729 at 1804.317 kb on - strand, within B158DRAFT_1729 at 1804.317 kb on - strand, within B158DRAFT_1729 at 1804.357 kb on + strand, within B158DRAFT_1729
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,802,176 - B158DRAFT_1727 0.69 -0.2 1,802,220 - B158DRAFT_1727 0.71 +0.4 1,802,220 - B158DRAFT_1727 0.71 -0.0 1,802,261 + B158DRAFT_1727 0.73 +0.4 1,802,350 - B158DRAFT_1727 0.78 -0.6 1,802,409 - B158DRAFT_1727 0.80 -0.2 1,802,409 - B158DRAFT_1727 0.80 -0.7 1,802,419 - B158DRAFT_1727 0.81 +0.4 1,802,431 + B158DRAFT_1727 0.81 -0.6 1,802,454 - B158DRAFT_1727 0.83 -0.6 1,802,564 + B158DRAFT_1727 0.88 +0.4 1,802,589 - B158DRAFT_1727 0.89 -0.2 1,802,710 - -1.0 1,802,710 - -0.4 1,802,780 + -0.6 1,802,948 + -0.5 1,802,975 + +0.7 1,802,990 - -0.0 1,802,990 - +0.3 1,803,073 + B158DRAFT_1728 0.12 -0.1 1,803,081 - B158DRAFT_1728 0.14 -0.3 1,803,081 - B158DRAFT_1728 0.14 -0.1 1,803,106 - B158DRAFT_1728 0.20 -0.1 1,803,226 + B158DRAFT_1728 0.53 +0.4 1,803,228 + B158DRAFT_1728 0.53 -0.7 1,803,228 + B158DRAFT_1728 0.53 -0.0 1,803,228 + B158DRAFT_1728 0.53 -0.1 1,803,228 + B158DRAFT_1728 0.53 -0.7 1,803,228 + B158DRAFT_1728 0.53 -0.5 1,803,236 - B158DRAFT_1728 0.55 -0.5 1,803,236 - B158DRAFT_1728 0.55 -0.3 1,803,236 - B158DRAFT_1728 0.55 -0.3 1,803,236 - B158DRAFT_1728 0.55 -1.2 1,803,236 - B158DRAFT_1728 0.55 -0.0 1,803,236 - B158DRAFT_1728 0.55 -0.5 1,803,236 - B158DRAFT_1728 0.55 -0.4 1,803,240 + B158DRAFT_1728 0.56 -1.5 1,803,271 + B158DRAFT_1728 0.65 -0.1 1,803,273 - B158DRAFT_1728 0.65 +1.1 1,803,279 - B158DRAFT_1728 0.67 -0.3 1,803,279 - B158DRAFT_1728 0.67 -0.2 1,803,279 - B158DRAFT_1728 0.67 +0.0 1,803,279 - B158DRAFT_1728 0.67 -0.4 1,803,279 - B158DRAFT_1728 0.67 +0.9 1,803,279 - B158DRAFT_1728 0.67 -0.4 1,803,304 + B158DRAFT_1728 0.74 -0.4 1,803,320 + B158DRAFT_1728 0.78 -0.4 1,803,467 + -0.5 1,803,538 - +0.5 1,803,572 + +0.3 1,803,572 + -0.1 1,803,572 + +0.3 1,803,572 + -0.6 1,803,580 - -0.5 1,803,580 - -0.8 1,803,664 + -0.8 1,803,672 - -0.2 1,803,715 - B158DRAFT_1729 0.11 -0.8 1,803,778 - B158DRAFT_1729 0.14 +0.5 1,803,820 - B158DRAFT_1729 0.16 +0.2 1,803,820 - B158DRAFT_1729 0.16 -0.4 1,803,896 - B158DRAFT_1729 0.20 -0.6 1,803,973 - B158DRAFT_1729 0.24 +0.3 1,803,973 - B158DRAFT_1729 0.24 +0.2 1,804,075 + B158DRAFT_1729 0.29 +0.5 1,804,075 + B158DRAFT_1729 0.29 +0.0 1,804,083 - B158DRAFT_1729 0.29 +0.1 1,804,142 + B158DRAFT_1729 0.32 -0.6 1,804,207 + B158DRAFT_1729 0.36 +0.3 1,804,215 - B158DRAFT_1729 0.36 -0.2 1,804,215 - B158DRAFT_1729 0.36 -1.2 1,804,243 + B158DRAFT_1729 0.37 -0.7 1,804,282 - B158DRAFT_1729 0.39 +0.1 1,804,291 + B158DRAFT_1729 0.40 -0.1 1,804,317 - B158DRAFT_1729 0.41 -0.1 1,804,317 - B158DRAFT_1729 0.41 +0.7 1,804,357 + B158DRAFT_1729 0.43 +0.2
Or see this region's nucleotide sequence