Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1511 and B158DRAFT_1512 are separated by 6 nucleotides B158DRAFT_1512 and B158DRAFT_1513 are separated by 7 nucleotides B158DRAFT_1513 and B158DRAFT_1514 are separated by 165 nucleotides B158DRAFT_1514 and B158DRAFT_1515 overlap by 1 nucleotides
B158DRAFT_1511: B158DRAFT_1511 - Predicted esterase, at 1,566,121 to 1,566,690
_1511
B158DRAFT_1512: B158DRAFT_1512 - Protein of unknown function (DUF2489)., at 1,566,697 to 1,567,170
_1512
B158DRAFT_1513: B158DRAFT_1513 - tRNA_Arg_CCG, at 1,567,178 to 1,567,254
_1513
B158DRAFT_1514: B158DRAFT_1514 - Pseudouridylate synthases, 23S RNA-specific, at 1,567,420 to 1,568,088
_1514
B158DRAFT_1515: B158DRAFT_1515 - methyltransferase, putative, at 1,568,088 to 1,569,089
_1515
Position (kb)
1567
1568
1569 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1566.463 kb on - strand, within B158DRAFT_1511 at 1566.475 kb on + strand, within B158DRAFT_1511 at 1566.478 kb on + strand, within B158DRAFT_1511 at 1566.478 kb on - strand, within B158DRAFT_1511 at 1566.530 kb on + strand, within B158DRAFT_1511 at 1566.538 kb on - strand, within B158DRAFT_1511 at 1566.543 kb on - strand, within B158DRAFT_1511 at 1566.548 kb on + strand, within B158DRAFT_1511 at 1566.593 kb on + strand, within B158DRAFT_1511 at 1566.594 kb on + strand, within B158DRAFT_1511 at 1566.602 kb on - strand, within B158DRAFT_1511 at 1566.602 kb on - strand, within B158DRAFT_1511 at 1566.622 kb on + strand, within B158DRAFT_1511 at 1566.632 kb on + strand, within B158DRAFT_1511 at 1566.640 kb on - strand at 1566.640 kb on - strand at 1566.762 kb on - strand, within B158DRAFT_1512 at 1566.825 kb on - strand, within B158DRAFT_1512 at 1566.884 kb on + strand, within B158DRAFT_1512 at 1566.892 kb on - strand, within B158DRAFT_1512 at 1566.894 kb on + strand, within B158DRAFT_1512 at 1566.902 kb on - strand, within B158DRAFT_1512 at 1566.904 kb on + strand, within B158DRAFT_1512 at 1566.942 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.981 kb on + strand, within B158DRAFT_1512 at 1566.989 kb on - strand, within B158DRAFT_1512 at 1566.989 kb on - strand, within B158DRAFT_1512 at 1566.989 kb on - strand, within B158DRAFT_1512 at 1566.989 kb on - strand, within B158DRAFT_1512 at 1566.989 kb on - strand, within B158DRAFT_1512 at 1566.989 kb on - strand, within B158DRAFT_1512 at 1566.989 kb on - strand, within B158DRAFT_1512 at 1566.989 kb on - strand, within B158DRAFT_1512 at 1566.989 kb on - strand, within B158DRAFT_1512 at 1566.989 kb on - strand, within B158DRAFT_1512 at 1566.989 kb on - strand, within B158DRAFT_1512 at 1566.999 kb on - strand, within B158DRAFT_1512 at 1567.091 kb on - strand, within B158DRAFT_1512 at 1567.114 kb on - strand, within B158DRAFT_1512 at 1567.140 kb on + strand at 1567.148 kb on + strand at 1567.293 kb on - strand at 1567.305 kb on + strand at 1567.313 kb on - strand at 1567.358 kb on - strand at 1567.358 kb on - strand at 1567.372 kb on + strand at 1567.452 kb on - strand at 1567.475 kb on - strand at 1567.477 kb on + strand at 1567.482 kb on + strand at 1567.482 kb on + strand at 1567.482 kb on + strand at 1567.482 kb on + strand at 1567.490 kb on + strand, within B158DRAFT_1514 at 1567.490 kb on - strand, within B158DRAFT_1514 at 1567.490 kb on - strand, within B158DRAFT_1514 at 1567.490 kb on - strand, within B158DRAFT_1514 at 1567.562 kb on - strand, within B158DRAFT_1514 at 1567.562 kb on - strand, within B158DRAFT_1514 at 1567.562 kb on - strand, within B158DRAFT_1514 at 1567.562 kb on - strand, within B158DRAFT_1514 at 1567.562 kb on - strand, within B158DRAFT_1514 at 1567.569 kb on + strand, within B158DRAFT_1514 at 1567.572 kb on - strand, within B158DRAFT_1514 at 1567.572 kb on - strand, within B158DRAFT_1514 at 1567.598 kb on - strand, within B158DRAFT_1514 at 1567.626 kb on + strand, within B158DRAFT_1514 at 1567.723 kb on - strand, within B158DRAFT_1514 at 1567.793 kb on + strand, within B158DRAFT_1514 at 1567.793 kb on + strand, within B158DRAFT_1514 at 1567.798 kb on + strand, within B158DRAFT_1514 at 1567.798 kb on + strand, within B158DRAFT_1514 at 1567.803 kb on - strand, within B158DRAFT_1514 at 1567.835 kb on - strand, within B158DRAFT_1514 at 1567.916 kb on + strand, within B158DRAFT_1514 at 1567.916 kb on + strand, within B158DRAFT_1514 at 1567.916 kb on + strand, within B158DRAFT_1514 at 1567.924 kb on - strand, within B158DRAFT_1514 at 1567.924 kb on - strand, within B158DRAFT_1514 at 1567.990 kb on + strand, within B158DRAFT_1514 at 1568.051 kb on + strand at 1568.052 kb on + strand at 1568.052 kb on + strand at 1568.070 kb on - strand at 1568.142 kb on + strand at 1568.152 kb on + strand at 1568.166 kb on + strand at 1568.174 kb on - strand at 1568.230 kb on - strand, within B158DRAFT_1515 at 1568.243 kb on - strand, within B158DRAFT_1515 at 1568.254 kb on - strand, within B158DRAFT_1515 at 1568.302 kb on - strand, within B158DRAFT_1515 at 1568.327 kb on + strand, within B158DRAFT_1515 at 1568.335 kb on - strand, within B158DRAFT_1515 at 1568.525 kb on - strand, within B158DRAFT_1515 at 1568.554 kb on - strand, within B158DRAFT_1515 at 1568.565 kb on + strand, within B158DRAFT_1515 at 1568.633 kb on + strand, within B158DRAFT_1515 at 1568.633 kb on + strand, within B158DRAFT_1515 at 1568.641 kb on - strand, within B158DRAFT_1515 at 1568.641 kb on - strand, within B158DRAFT_1515 at 1568.668 kb on + strand, within B158DRAFT_1515 at 1568.729 kb on - strand, within B158DRAFT_1515 at 1568.744 kb on + strand, within B158DRAFT_1515 at 1568.782 kb on + strand, within B158DRAFT_1515 at 1568.783 kb on - strand, within B158DRAFT_1515 at 1568.790 kb on - strand, within B158DRAFT_1515 at 1568.823 kb on - strand, within B158DRAFT_1515 at 1568.948 kb on + strand, within B158DRAFT_1515 at 1568.955 kb on - strand, within B158DRAFT_1515 at 1568.955 kb on - strand, within B158DRAFT_1515 at 1568.957 kb on + strand, within B158DRAFT_1515 at 1568.957 kb on + strand, within B158DRAFT_1515 at 1568.957 kb on + strand, within B158DRAFT_1515 at 1568.957 kb on + strand, within B158DRAFT_1515 at 1568.957 kb on + strand, within B158DRAFT_1515 at 1568.957 kb on + strand, within B158DRAFT_1515 at 1568.957 kb on + strand, within B158DRAFT_1515 at 1568.965 kb on - strand, within B158DRAFT_1515 at 1568.965 kb on - strand, within B158DRAFT_1515 at 1568.965 kb on - strand, within B158DRAFT_1515 at 1568.965 kb on - strand, within B158DRAFT_1515 at 1568.965 kb on - strand, within B158DRAFT_1515 at 1568.965 kb on - strand, within B158DRAFT_1515 at 1568.965 kb on - strand, within B158DRAFT_1515 at 1568.965 kb on - strand, within B158DRAFT_1515 at 1568.965 kb on - strand, within B158DRAFT_1515 at 1568.995 kb on + strand at 1569.013 kb on - strand at 1569.051 kb on + strand at 1569.062 kb on + strand at 1569.069 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,566,463 - B158DRAFT_1511 0.60 -0.7 1,566,475 + B158DRAFT_1511 0.62 -0.2 1,566,478 + B158DRAFT_1511 0.63 -0.4 1,566,478 - B158DRAFT_1511 0.63 +0.2 1,566,530 + B158DRAFT_1511 0.72 -0.2 1,566,538 - B158DRAFT_1511 0.73 +0.4 1,566,543 - B158DRAFT_1511 0.74 +1.0 1,566,548 + B158DRAFT_1511 0.75 -1.0 1,566,593 + B158DRAFT_1511 0.83 +0.0 1,566,594 + B158DRAFT_1511 0.83 +0.2 1,566,602 - B158DRAFT_1511 0.84 -0.4 1,566,602 - B158DRAFT_1511 0.84 -0.2 1,566,622 + B158DRAFT_1511 0.88 +0.7 1,566,632 + B158DRAFT_1511 0.90 -0.8 1,566,640 - +0.0 1,566,640 - -0.1 1,566,762 - B158DRAFT_1512 0.14 +0.1 1,566,825 - B158DRAFT_1512 0.27 -0.2 1,566,884 + B158DRAFT_1512 0.39 +0.4 1,566,892 - B158DRAFT_1512 0.41 +1.2 1,566,894 + B158DRAFT_1512 0.42 -0.7 1,566,902 - B158DRAFT_1512 0.43 -0.0 1,566,904 + B158DRAFT_1512 0.44 +0.4 1,566,942 + B158DRAFT_1512 0.52 -0.2 1,566,981 + B158DRAFT_1512 0.60 -0.7 1,566,981 + B158DRAFT_1512 0.60 -0.0 1,566,981 + B158DRAFT_1512 0.60 -0.1 1,566,981 + B158DRAFT_1512 0.60 -0.7 1,566,981 + B158DRAFT_1512 0.60 +0.2 1,566,981 + B158DRAFT_1512 0.60 -0.2 1,566,981 + B158DRAFT_1512 0.60 +0.2 1,566,981 + B158DRAFT_1512 0.60 -0.3 1,566,981 + B158DRAFT_1512 0.60 -0.4 1,566,981 + B158DRAFT_1512 0.60 +0.1 1,566,981 + B158DRAFT_1512 0.60 +0.5 1,566,981 + B158DRAFT_1512 0.60 -0.3 1,566,981 + B158DRAFT_1512 0.60 +0.1 1,566,981 + B158DRAFT_1512 0.60 -0.7 1,566,981 + B158DRAFT_1512 0.60 -0.4 1,566,981 + B158DRAFT_1512 0.60 -0.6 1,566,981 + B158DRAFT_1512 0.60 +0.4 1,566,989 - B158DRAFT_1512 0.62 -0.7 1,566,989 - B158DRAFT_1512 0.62 -1.3 1,566,989 - B158DRAFT_1512 0.62 +0.8 1,566,989 - B158DRAFT_1512 0.62 -0.3 1,566,989 - B158DRAFT_1512 0.62 +0.3 1,566,989 - B158DRAFT_1512 0.62 -0.2 1,566,989 - B158DRAFT_1512 0.62 -0.2 1,566,989 - B158DRAFT_1512 0.62 -0.2 1,566,989 - B158DRAFT_1512 0.62 -0.5 1,566,989 - B158DRAFT_1512 0.62 -0.2 1,566,989 - B158DRAFT_1512 0.62 -0.9 1,566,999 - B158DRAFT_1512 0.64 +0.1 1,567,091 - B158DRAFT_1512 0.83 +0.2 1,567,114 - B158DRAFT_1512 0.88 -0.1 1,567,140 + -1.1 1,567,148 + +0.2 1,567,293 - -1.7 1,567,305 + -1.6 1,567,313 - +0.4 1,567,358 - -0.3 1,567,358 - +0.1 1,567,372 + -0.4 1,567,452 - +0.3 1,567,475 - -0.5 1,567,477 + +0.1 1,567,482 + +0.3 1,567,482 + -1.0 1,567,482 + +0.0 1,567,482 + -0.1 1,567,490 + B158DRAFT_1514 0.10 -1.7 1,567,490 - B158DRAFT_1514 0.10 +1.0 1,567,490 - B158DRAFT_1514 0.10 -0.1 1,567,490 - B158DRAFT_1514 0.10 -0.4 1,567,562 - B158DRAFT_1514 0.21 -0.2 1,567,562 - B158DRAFT_1514 0.21 -1.3 1,567,562 - B158DRAFT_1514 0.21 -0.3 1,567,562 - B158DRAFT_1514 0.21 -0.7 1,567,562 - B158DRAFT_1514 0.21 +0.4 1,567,569 + B158DRAFT_1514 0.22 -0.7 1,567,572 - B158DRAFT_1514 0.23 -0.1 1,567,572 - B158DRAFT_1514 0.23 -1.0 1,567,598 - B158DRAFT_1514 0.27 -0.3 1,567,626 + B158DRAFT_1514 0.31 +0.2 1,567,723 - B158DRAFT_1514 0.45 +0.5 1,567,793 + B158DRAFT_1514 0.56 -0.8 1,567,793 + B158DRAFT_1514 0.56 -0.7 1,567,798 + B158DRAFT_1514 0.57 +0.9 1,567,798 + B158DRAFT_1514 0.57 +0.7 1,567,803 - B158DRAFT_1514 0.57 -0.4 1,567,835 - B158DRAFT_1514 0.62 +0.1 1,567,916 + B158DRAFT_1514 0.74 -0.1 1,567,916 + B158DRAFT_1514 0.74 -0.7 1,567,916 + B158DRAFT_1514 0.74 +0.0 1,567,924 - B158DRAFT_1514 0.75 -0.2 1,567,924 - B158DRAFT_1514 0.75 -0.8 1,567,990 + B158DRAFT_1514 0.85 +0.6 1,568,051 + +0.2 1,568,052 + -1.0 1,568,052 + +0.3 1,568,070 - -1.4 1,568,142 + +0.1 1,568,152 + -0.2 1,568,166 + -0.4 1,568,174 - +0.1 1,568,230 - B158DRAFT_1515 0.14 -0.6 1,568,243 - B158DRAFT_1515 0.15 -0.1 1,568,254 - B158DRAFT_1515 0.17 -0.7 1,568,302 - B158DRAFT_1515 0.21 -0.0 1,568,327 + B158DRAFT_1515 0.24 -0.6 1,568,335 - B158DRAFT_1515 0.25 +1.3 1,568,525 - B158DRAFT_1515 0.44 -0.2 1,568,554 - B158DRAFT_1515 0.47 -0.9 1,568,565 + B158DRAFT_1515 0.48 -0.4 1,568,633 + B158DRAFT_1515 0.54 -0.8 1,568,633 + B158DRAFT_1515 0.54 -2.8 1,568,641 - B158DRAFT_1515 0.55 -0.6 1,568,641 - B158DRAFT_1515 0.55 +0.5 1,568,668 + B158DRAFT_1515 0.58 -0.8 1,568,729 - B158DRAFT_1515 0.64 -0.5 1,568,744 + B158DRAFT_1515 0.65 -0.7 1,568,782 + B158DRAFT_1515 0.69 -0.2 1,568,783 - B158DRAFT_1515 0.69 -1.2 1,568,790 - B158DRAFT_1515 0.70 -0.5 1,568,823 - B158DRAFT_1515 0.73 -0.6 1,568,948 + B158DRAFT_1515 0.86 -1.8 1,568,955 - B158DRAFT_1515 0.87 +0.1 1,568,955 - B158DRAFT_1515 0.87 -1.6 1,568,957 + B158DRAFT_1515 0.87 -0.2 1,568,957 + B158DRAFT_1515 0.87 +0.1 1,568,957 + B158DRAFT_1515 0.87 -0.9 1,568,957 + B158DRAFT_1515 0.87 -1.0 1,568,957 + B158DRAFT_1515 0.87 -0.3 1,568,957 + B158DRAFT_1515 0.87 -0.7 1,568,957 + B158DRAFT_1515 0.87 -0.3 1,568,965 - B158DRAFT_1515 0.88 -0.1 1,568,965 - B158DRAFT_1515 0.88 -0.3 1,568,965 - B158DRAFT_1515 0.88 -0.2 1,568,965 - B158DRAFT_1515 0.88 -0.8 1,568,965 - B158DRAFT_1515 0.88 +0.3 1,568,965 - B158DRAFT_1515 0.88 -1.9 1,568,965 - B158DRAFT_1515 0.88 -0.8 1,568,965 - B158DRAFT_1515 0.88 -0.7 1,568,965 - B158DRAFT_1515 0.88 -0.8 1,568,995 + +0.0 1,569,013 - -0.4 1,569,051 + -1.0 1,569,062 + +0.4 1,569,069 - -0.4
Or see this region's nucleotide sequence