Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_1033 and B158DRAFT_1034 are separated by 83 nucleotides B158DRAFT_1034 and B158DRAFT_1035 are separated by 213 nucleotides B158DRAFT_1035 and B158DRAFT_1036 are separated by 21 nucleotides
B158DRAFT_1033: B158DRAFT_1033 - trigger factor, at 1,069,744 to 1,071,042
_1033
B158DRAFT_1034: B158DRAFT_1034 - ATP-dependent Clp protease, proteolytic subunit ClpP, at 1,071,126 to 1,071,743
_1034
B158DRAFT_1035: B158DRAFT_1035 - hypothetical protein, at 1,071,957 to 1,073,306
_1035
B158DRAFT_1036: B158DRAFT_1036 - Calcineurin-like phosphoesterase., at 1,073,328 to 1,075,223
_1036
Position (kb)
1071
1072
1073
1074 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1071.092 kb on - strand at 1071.182 kb on + strand at 1071.182 kb on + strand at 1071.182 kb on + strand at 1071.190 kb on - strand, within B158DRAFT_1034 at 1071.192 kb on + strand, within B158DRAFT_1034 at 1071.195 kb on - strand, within B158DRAFT_1034 at 1071.197 kb on + strand, within B158DRAFT_1034 at 1071.383 kb on + strand, within B158DRAFT_1034 at 1071.391 kb on - strand, within B158DRAFT_1034 at 1071.396 kb on - strand, within B158DRAFT_1034 at 1071.406 kb on + strand, within B158DRAFT_1034 at 1071.439 kb on - strand, within B158DRAFT_1034 at 1071.480 kb on + strand, within B158DRAFT_1034 at 1071.485 kb on + strand, within B158DRAFT_1034 at 1071.485 kb on + strand, within B158DRAFT_1034 at 1071.485 kb on + strand, within B158DRAFT_1034 at 1071.485 kb on + strand, within B158DRAFT_1034 at 1071.493 kb on - strand, within B158DRAFT_1034 at 1071.655 kb on + strand, within B158DRAFT_1034 at 1071.679 kb on + strand, within B158DRAFT_1034 at 1071.687 kb on - strand at 1071.687 kb on - strand at 1071.692 kb on - strand at 1071.697 kb on + strand at 1071.745 kb on + strand at 1071.745 kb on + strand at 1071.755 kb on + strand at 1071.768 kb on - strand at 1071.791 kb on - strand at 1071.838 kb on + strand at 1071.846 kb on - strand at 1071.890 kb on - strand at 1071.911 kb on - strand at 1071.985 kb on + strand at 1072.062 kb on - strand at 1072.156 kb on + strand, within B158DRAFT_1035 at 1072.342 kb on + strand, within B158DRAFT_1035 at 1072.342 kb on + strand, within B158DRAFT_1035 at 1072.342 kb on + strand, within B158DRAFT_1035 at 1072.342 kb on + strand, within B158DRAFT_1035 at 1072.347 kb on + strand, within B158DRAFT_1035 at 1072.350 kb on - strand, within B158DRAFT_1035 at 1072.350 kb on - strand, within B158DRAFT_1035 at 1072.350 kb on - strand, within B158DRAFT_1035 at 1072.350 kb on - strand, within B158DRAFT_1035 at 1072.350 kb on - strand, within B158DRAFT_1035 at 1072.355 kb on - strand, within B158DRAFT_1035 at 1072.355 kb on - strand, within B158DRAFT_1035 at 1072.355 kb on - strand, within B158DRAFT_1035 at 1072.357 kb on + strand, within B158DRAFT_1035 at 1072.365 kb on - strand, within B158DRAFT_1035 at 1072.365 kb on - strand, within B158DRAFT_1035 at 1072.376 kb on + strand, within B158DRAFT_1035 at 1072.403 kb on - strand, within B158DRAFT_1035 at 1072.405 kb on + strand, within B158DRAFT_1035 at 1072.413 kb on - strand, within B158DRAFT_1035 at 1072.485 kb on + strand, within B158DRAFT_1035 at 1072.485 kb on + strand, within B158DRAFT_1035 at 1072.485 kb on + strand, within B158DRAFT_1035 at 1072.493 kb on - strand, within B158DRAFT_1035 at 1072.493 kb on - strand, within B158DRAFT_1035 at 1072.541 kb on - strand, within B158DRAFT_1035 at 1072.714 kb on - strand, within B158DRAFT_1035 at 1072.778 kb on - strand, within B158DRAFT_1035 at 1072.822 kb on - strand, within B158DRAFT_1035 at 1072.824 kb on + strand, within B158DRAFT_1035 at 1072.837 kb on + strand, within B158DRAFT_1035 at 1072.964 kb on - strand, within B158DRAFT_1035 at 1072.980 kb on - strand, within B158DRAFT_1035 at 1073.001 kb on + strand, within B158DRAFT_1035 at 1073.137 kb on + strand, within B158DRAFT_1035 at 1073.137 kb on + strand, within B158DRAFT_1035 at 1073.137 kb on + strand, within B158DRAFT_1035 at 1073.145 kb on - strand, within B158DRAFT_1035 at 1073.257 kb on - strand at 1073.257 kb on - strand at 1073.313 kb on + strand at 1073.318 kb on + strand at 1073.325 kb on + strand at 1073.380 kb on + strand at 1073.417 kb on - strand at 1073.419 kb on + strand at 1073.419 kb on + strand at 1073.419 kb on + strand at 1073.419 kb on + strand at 1073.419 kb on + strand at 1073.419 kb on + strand at 1073.425 kb on + strand at 1073.427 kb on - strand at 1073.427 kb on - strand at 1073.443 kb on + strand at 1073.443 kb on + strand at 1073.445 kb on + strand at 1073.508 kb on + strand at 1073.516 kb on + strand at 1073.516 kb on + strand at 1073.662 kb on + strand, within B158DRAFT_1036 at 1073.662 kb on + strand, within B158DRAFT_1036 at 1073.662 kb on + strand, within B158DRAFT_1036 at 1073.673 kb on - strand, within B158DRAFT_1036 at 1073.690 kb on + strand, within B158DRAFT_1036 at 1073.711 kb on + strand, within B158DRAFT_1036 at 1073.759 kb on - strand, within B158DRAFT_1036 at 1073.774 kb on - strand, within B158DRAFT_1036 at 1073.799 kb on - strand, within B158DRAFT_1036 at 1074.043 kb on - strand, within B158DRAFT_1036 at 1074.069 kb on - strand, within B158DRAFT_1036 at 1074.136 kb on + strand, within B158DRAFT_1036 at 1074.136 kb on + strand, within B158DRAFT_1036 at 1074.144 kb on - strand, within B158DRAFT_1036 at 1074.149 kb on - strand, within B158DRAFT_1036 at 1074.180 kb on - strand, within B158DRAFT_1036 at 1074.227 kb on + strand, within B158DRAFT_1036 at 1074.235 kb on - strand, within B158DRAFT_1036
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 1,071,092 - +0.0 1,071,182 + +0.8 1,071,182 + +3.0 1,071,182 + +0.7 1,071,190 - B158DRAFT_1034 0.10 +1.3 1,071,192 + B158DRAFT_1034 0.11 +1.2 1,071,195 - B158DRAFT_1034 0.11 +0.6 1,071,197 + B158DRAFT_1034 0.11 +0.6 1,071,383 + B158DRAFT_1034 0.42 +0.8 1,071,391 - B158DRAFT_1034 0.43 +0.6 1,071,396 - B158DRAFT_1034 0.44 +0.2 1,071,406 + B158DRAFT_1034 0.45 +0.8 1,071,439 - B158DRAFT_1034 0.51 +0.4 1,071,480 + B158DRAFT_1034 0.57 +0.6 1,071,485 + B158DRAFT_1034 0.58 +1.8 1,071,485 + B158DRAFT_1034 0.58 +0.4 1,071,485 + B158DRAFT_1034 0.58 +2.8 1,071,485 + B158DRAFT_1034 0.58 +0.4 1,071,493 - B158DRAFT_1034 0.59 +0.9 1,071,655 + B158DRAFT_1034 0.86 +0.4 1,071,679 + B158DRAFT_1034 0.89 +0.6 1,071,687 - +0.4 1,071,687 - +0.9 1,071,692 - +0.4 1,071,697 + +0.3 1,071,745 + +0.1 1,071,745 + -0.8 1,071,755 + -0.1 1,071,768 - -0.2 1,071,791 - +0.2 1,071,838 + -0.4 1,071,846 - -0.1 1,071,890 - -0.7 1,071,911 - -1.4 1,071,985 + -0.1 1,072,062 - +0.5 1,072,156 + B158DRAFT_1035 0.15 +0.5 1,072,342 + B158DRAFT_1035 0.29 +0.0 1,072,342 + B158DRAFT_1035 0.29 +0.1 1,072,342 + B158DRAFT_1035 0.29 -0.4 1,072,342 + B158DRAFT_1035 0.29 +0.1 1,072,347 + B158DRAFT_1035 0.29 -0.5 1,072,350 - B158DRAFT_1035 0.29 -0.2 1,072,350 - B158DRAFT_1035 0.29 -0.1 1,072,350 - B158DRAFT_1035 0.29 +0.2 1,072,350 - B158DRAFT_1035 0.29 -0.4 1,072,350 - B158DRAFT_1035 0.29 -0.8 1,072,355 - B158DRAFT_1035 0.29 -2.4 1,072,355 - B158DRAFT_1035 0.29 -0.9 1,072,355 - B158DRAFT_1035 0.29 -0.1 1,072,357 + B158DRAFT_1035 0.30 -0.2 1,072,365 - B158DRAFT_1035 0.30 +0.7 1,072,365 - B158DRAFT_1035 0.30 -0.0 1,072,376 + B158DRAFT_1035 0.31 -0.6 1,072,403 - B158DRAFT_1035 0.33 -0.1 1,072,405 + B158DRAFT_1035 0.33 +0.6 1,072,413 - B158DRAFT_1035 0.34 -0.1 1,072,485 + B158DRAFT_1035 0.39 +0.4 1,072,485 + B158DRAFT_1035 0.39 +0.3 1,072,485 + B158DRAFT_1035 0.39 +0.0 1,072,493 - B158DRAFT_1035 0.40 -0.1 1,072,493 - B158DRAFT_1035 0.40 -0.2 1,072,541 - B158DRAFT_1035 0.43 +0.5 1,072,714 - B158DRAFT_1035 0.56 +0.4 1,072,778 - B158DRAFT_1035 0.61 -0.5 1,072,822 - B158DRAFT_1035 0.64 +1.3 1,072,824 + B158DRAFT_1035 0.64 -0.4 1,072,837 + B158DRAFT_1035 0.65 +0.2 1,072,964 - B158DRAFT_1035 0.75 -0.1 1,072,980 - B158DRAFT_1035 0.76 -0.8 1,073,001 + B158DRAFT_1035 0.77 -0.3 1,073,137 + B158DRAFT_1035 0.87 -0.3 1,073,137 + B158DRAFT_1035 0.87 -0.6 1,073,137 + B158DRAFT_1035 0.87 -0.1 1,073,145 - B158DRAFT_1035 0.88 +0.3 1,073,257 - -0.2 1,073,257 - -1.7 1,073,313 + +0.4 1,073,318 + +1.0 1,073,325 + -0.4 1,073,380 + -1.7 1,073,417 - -0.0 1,073,419 + +0.5 1,073,419 + -0.6 1,073,419 + -0.5 1,073,419 + -0.8 1,073,419 + -0.0 1,073,419 + +0.1 1,073,425 + +0.6 1,073,427 - -0.5 1,073,427 - -0.1 1,073,443 + -0.7 1,073,443 + +0.2 1,073,445 + -0.4 1,073,508 + -1.1 1,073,516 + -0.5 1,073,516 + +0.3 1,073,662 + B158DRAFT_1036 0.18 +0.1 1,073,662 + B158DRAFT_1036 0.18 -0.1 1,073,662 + B158DRAFT_1036 0.18 -0.8 1,073,673 - B158DRAFT_1036 0.18 +0.0 1,073,690 + B158DRAFT_1036 0.19 -0.1 1,073,711 + B158DRAFT_1036 0.20 -0.3 1,073,759 - B158DRAFT_1036 0.23 +0.3 1,073,774 - B158DRAFT_1036 0.24 +0.5 1,073,799 - B158DRAFT_1036 0.25 -0.2 1,074,043 - B158DRAFT_1036 0.38 -0.5 1,074,069 - B158DRAFT_1036 0.39 -0.8 1,074,136 + B158DRAFT_1036 0.43 +0.0 1,074,136 + B158DRAFT_1036 0.43 -2.3 1,074,144 - B158DRAFT_1036 0.43 -0.4 1,074,149 - B158DRAFT_1036 0.43 -1.3 1,074,180 - B158DRAFT_1036 0.45 +0.4 1,074,227 + B158DRAFT_1036 0.47 -1.0 1,074,235 - B158DRAFT_1036 0.48 +0.1
Or see this region's nucleotide sequence