Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0696 and B158DRAFT_0697 are separated by 2 nucleotides B158DRAFT_0697 and B158DRAFT_0698 overlap by 4 nucleotides B158DRAFT_0698 and B158DRAFT_0699 overlap by 4 nucleotides
B158DRAFT_0696: B158DRAFT_0696 - Type II secretory pathway, component PulK, at 697,329 to 698,414
_0696
B158DRAFT_0697: B158DRAFT_0697 - Type II secretory pathway, component PulL, at 698,417 to 699,652
_0697
B158DRAFT_0698: B158DRAFT_0698 - Type II secretory pathway, component PulM, at 699,649 to 700,131
_0698
B158DRAFT_0699: B158DRAFT_0699 - type II secretion system protein N (GspN), at 700,128 to 700,874
_0699
Position (kb) 698
699
700 Strain fitness (log2 ratio) -2
-1
0
1 at 697.428 kb on + strand at 697.428 kb on + strand at 697.436 kb on - strand at 697.504 kb on + strand, within B158DRAFT_0696 at 697.533 kb on + strand, within B158DRAFT_0696 at 697.806 kb on + strand, within B158DRAFT_0696 at 697.844 kb on + strand, within B158DRAFT_0696 at 697.850 kb on + strand, within B158DRAFT_0696 at 697.891 kb on - strand, within B158DRAFT_0696 at 697.930 kb on - strand, within B158DRAFT_0696 at 697.973 kb on + strand, within B158DRAFT_0696 at 697.981 kb on - strand, within B158DRAFT_0696 at 698.039 kb on + strand, within B158DRAFT_0696 at 698.052 kb on + strand, within B158DRAFT_0696 at 698.060 kb on - strand, within B158DRAFT_0696 at 698.179 kb on + strand, within B158DRAFT_0696 at 698.337 kb on + strand at 698.349 kb on + strand at 698.483 kb on + strand at 698.605 kb on - strand, within B158DRAFT_0697 at 698.615 kb on - strand, within B158DRAFT_0697 at 698.675 kb on - strand, within B158DRAFT_0697 at 698.707 kb on + strand, within B158DRAFT_0697 at 698.827 kb on + strand, within B158DRAFT_0697 at 698.878 kb on - strand, within B158DRAFT_0697 at 699.136 kb on - strand, within B158DRAFT_0697 at 699.351 kb on + strand, within B158DRAFT_0697 at 699.559 kb on + strand at 699.647 kb on - strand at 699.854 kb on + strand, within B158DRAFT_0698 at 699.890 kb on + strand, within B158DRAFT_0698 at 700.039 kb on + strand, within B158DRAFT_0698 at 700.048 kb on - strand, within B158DRAFT_0698 at 700.069 kb on - strand, within B158DRAFT_0698 at 700.217 kb on - strand, within B158DRAFT_0699 at 700.224 kb on + strand, within B158DRAFT_0699 at 700.224 kb on + strand, within B158DRAFT_0699 at 700.239 kb on - strand, within B158DRAFT_0699 at 700.246 kb on + strand, within B158DRAFT_0699 at 700.327 kb on - strand, within B158DRAFT_0699 at 700.479 kb on + strand, within B158DRAFT_0699 at 700.484 kb on + strand, within B158DRAFT_0699 at 700.487 kb on - strand, within B158DRAFT_0699 at 700.487 kb on - strand, within B158DRAFT_0699 at 700.487 kb on - strand, within B158DRAFT_0699 at 700.487 kb on - strand, within B158DRAFT_0699 at 700.489 kb on + strand, within B158DRAFT_0699 at 700.596 kb on - strand, within B158DRAFT_0699 at 700.600 kb on + strand, within B158DRAFT_0699 at 700.600 kb on + strand, within B158DRAFT_0699 at 700.613 kb on - strand, within B158DRAFT_0699 at 700.649 kb on + strand, within B158DRAFT_0699
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 697,428 + +1.1 697,428 + -0.7 697,436 - -0.5 697,504 + B158DRAFT_0696 0.16 -0.4 697,533 + B158DRAFT_0696 0.19 +0.5 697,806 + B158DRAFT_0696 0.44 -0.3 697,844 + B158DRAFT_0696 0.47 -0.9 697,850 + B158DRAFT_0696 0.48 -1.7 697,891 - B158DRAFT_0696 0.52 -1.6 697,930 - B158DRAFT_0696 0.55 -2.0 697,973 + B158DRAFT_0696 0.59 +0.1 697,981 - B158DRAFT_0696 0.60 -1.6 698,039 + B158DRAFT_0696 0.65 -0.7 698,052 + B158DRAFT_0696 0.67 +0.5 698,060 - B158DRAFT_0696 0.67 +1.1 698,179 + B158DRAFT_0696 0.78 -1.4 698,337 + -2.5 698,349 + +0.2 698,483 + -1.3 698,605 - B158DRAFT_0697 0.15 -0.3 698,615 - B158DRAFT_0697 0.16 -1.1 698,675 - B158DRAFT_0697 0.21 -0.9 698,707 + B158DRAFT_0697 0.23 +0.7 698,827 + B158DRAFT_0697 0.33 +0.5 698,878 - B158DRAFT_0697 0.37 -1.5 699,136 - B158DRAFT_0697 0.58 +0.5 699,351 + B158DRAFT_0697 0.76 +1.1 699,559 + -0.7 699,647 - -1.3 699,854 + B158DRAFT_0698 0.42 -1.4 699,890 + B158DRAFT_0698 0.50 -2.0 700,039 + B158DRAFT_0698 0.81 -0.7 700,048 - B158DRAFT_0698 0.83 -1.1 700,069 - B158DRAFT_0698 0.87 -1.8 700,217 - B158DRAFT_0699 0.12 -0.6 700,224 + B158DRAFT_0699 0.13 -0.4 700,224 + B158DRAFT_0699 0.13 -1.2 700,239 - B158DRAFT_0699 0.15 -0.2 700,246 + B158DRAFT_0699 0.16 -0.5 700,327 - B158DRAFT_0699 0.27 -0.4 700,479 + B158DRAFT_0699 0.47 -0.2 700,484 + B158DRAFT_0699 0.48 -0.4 700,487 - B158DRAFT_0699 0.48 +0.0 700,487 - B158DRAFT_0699 0.48 -0.1 700,487 - B158DRAFT_0699 0.48 -0.5 700,487 - B158DRAFT_0699 0.48 -0.9 700,489 + B158DRAFT_0699 0.48 -0.2 700,596 - B158DRAFT_0699 0.63 -0.2 700,600 + B158DRAFT_0699 0.63 -0.2 700,600 + B158DRAFT_0699 0.63 +0.6 700,613 - B158DRAFT_0699 0.65 +0.3 700,649 + B158DRAFT_0699 0.70 -1.0
Or see this region's nucleotide sequence