Experiment: marine broth
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0521 and B158DRAFT_0522 are separated by 2 nucleotides B158DRAFT_0522 and B158DRAFT_0524 are separated by 229 nucleotides B158DRAFT_0524 and B158DRAFT_0525 are separated by 184 nucleotides
B158DRAFT_0521: B158DRAFT_0521 - PEP-CTERM-box response regulator transcription factor, at 532,387 to 533,742
_0521
B158DRAFT_0522: B158DRAFT_0522 - hypothetical protein, at 533,745 to 534,035
_0522
B158DRAFT_0524: B158DRAFT_0524 - hypothetical protein, at 534,265 to 534,753
_0524
B158DRAFT_0525: B158DRAFT_0525 - ribose-5-phosphate isomerase (EC 5.3.1.6), at 534,938 to 535,597
_0525
Position (kb) 533
534
535 Strain fitness (log2 ratio) -1
0
1
2 at 532.841 kb on + strand, within B158DRAFT_0521 at 532.841 kb on + strand, within B158DRAFT_0521 at 533.020 kb on - strand, within B158DRAFT_0521 at 533.020 kb on - strand, within B158DRAFT_0521 at 533.020 kb on - strand, within B158DRAFT_0521 at 533.030 kb on - strand, within B158DRAFT_0521 at 533.043 kb on - strand, within B158DRAFT_0521 at 533.108 kb on + strand, within B158DRAFT_0521 at 533.121 kb on - strand, within B158DRAFT_0521 at 533.149 kb on + strand, within B158DRAFT_0521 at 533.165 kb on - strand, within B158DRAFT_0521 at 533.200 kb on - strand, within B158DRAFT_0521 at 533.215 kb on - strand, within B158DRAFT_0521 at 533.215 kb on - strand, within B158DRAFT_0521 at 533.458 kb on + strand, within B158DRAFT_0521 at 533.458 kb on + strand, within B158DRAFT_0521 at 533.466 kb on - strand, within B158DRAFT_0521 at 533.520 kb on - strand, within B158DRAFT_0521 at 533.566 kb on + strand, within B158DRAFT_0521 at 533.672 kb on + strand at 533.686 kb on + strand at 533.694 kb on - strand at 533.701 kb on + strand at 533.701 kb on + strand at 533.709 kb on - strand at 533.709 kb on - strand at 533.711 kb on + strand at 533.727 kb on - strand at 533.738 kb on + strand at 533.783 kb on + strand, within B158DRAFT_0522 at 533.793 kb on + strand, within B158DRAFT_0522 at 533.836 kb on + strand, within B158DRAFT_0522 at 533.844 kb on - strand, within B158DRAFT_0522 at 533.888 kb on + strand, within B158DRAFT_0522 at 533.945 kb on - strand, within B158DRAFT_0522 at 534.024 kb on - strand at 534.044 kb on + strand at 534.044 kb on + strand at 534.052 kb on - strand at 534.065 kb on + strand at 534.073 kb on - strand at 534.115 kb on - strand at 534.295 kb on + strand at 534.295 kb on + strand at 534.295 kb on - strand at 534.297 kb on + strand at 534.305 kb on - strand at 534.305 kb on - strand at 534.305 kb on - strand at 534.305 kb on - strand at 534.305 kb on - strand at 534.479 kb on + strand, within B158DRAFT_0524 at 534.479 kb on + strand, within B158DRAFT_0524 at 534.487 kb on - strand, within B158DRAFT_0524 at 534.489 kb on - strand, within B158DRAFT_0524 at 534.494 kb on + strand, within B158DRAFT_0524 at 534.551 kb on + strand, within B158DRAFT_0524 at 534.659 kb on - strand, within B158DRAFT_0524 at 534.718 kb on + strand at 534.887 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction marine broth remove 532,841 + B158DRAFT_0521 0.33 +0.3 532,841 + B158DRAFT_0521 0.33 +0.3 533,020 - B158DRAFT_0521 0.47 -0.8 533,020 - B158DRAFT_0521 0.47 +1.9 533,020 - B158DRAFT_0521 0.47 -0.6 533,030 - B158DRAFT_0521 0.47 +0.4 533,043 - B158DRAFT_0521 0.48 -0.7 533,108 + B158DRAFT_0521 0.53 +0.7 533,121 - B158DRAFT_0521 0.54 +0.1 533,149 + B158DRAFT_0521 0.56 +0.5 533,165 - B158DRAFT_0521 0.57 +0.9 533,200 - B158DRAFT_0521 0.60 +0.6 533,215 - B158DRAFT_0521 0.61 +0.5 533,215 - B158DRAFT_0521 0.61 +0.0 533,458 + B158DRAFT_0521 0.79 +0.3 533,458 + B158DRAFT_0521 0.79 +0.3 533,466 - B158DRAFT_0521 0.80 +0.4 533,520 - B158DRAFT_0521 0.84 +0.1 533,566 + B158DRAFT_0521 0.87 -0.9 533,672 + -0.2 533,686 + -1.0 533,694 - -0.2 533,701 + +0.1 533,701 + +0.4 533,709 - +0.4 533,709 - +1.0 533,711 + +0.4 533,727 - -0.2 533,738 + -0.3 533,783 + B158DRAFT_0522 0.13 -1.0 533,793 + B158DRAFT_0522 0.16 -0.0 533,836 + B158DRAFT_0522 0.31 +0.1 533,844 - B158DRAFT_0522 0.34 +0.5 533,888 + B158DRAFT_0522 0.49 -0.3 533,945 - B158DRAFT_0522 0.69 -1.4 534,024 - -0.3 534,044 + -0.4 534,044 + -0.5 534,052 - +0.3 534,065 + +0.4 534,073 - +0.1 534,115 - -0.6 534,295 + -0.2 534,295 + +0.7 534,295 - -0.7 534,297 + -0.2 534,305 - -1.0 534,305 - -0.2 534,305 - +0.1 534,305 - -0.2 534,305 - -0.6 534,479 + B158DRAFT_0524 0.44 -0.6 534,479 + B158DRAFT_0524 0.44 -0.1 534,487 - B158DRAFT_0524 0.45 -0.1 534,489 - B158DRAFT_0524 0.46 +0.1 534,494 + B158DRAFT_0524 0.47 -0.5 534,551 + B158DRAFT_0524 0.58 -0.8 534,659 - B158DRAFT_0524 0.81 +0.1 534,718 + -0.9 534,887 + -0.1
Or see this region's nucleotide sequence