Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2167

Experiment: m.b. Cisplatin 0.0125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2166 and B158DRAFT_2167 are separated by 21 nucleotidesB158DRAFT_2167 and B158DRAFT_2168 overlap by 4 nucleotides B158DRAFT_2166: B158DRAFT_2166 - putative quinone oxidoreductase, YhdH/YhfP family, at 308,091 to 309,086 _2166 B158DRAFT_2167: B158DRAFT_2167 - probable DNA repair protein, at 309,108 to 311,849 _2167 B158DRAFT_2168: B158DRAFT_2168 - ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains), at 311,846 to 315,262 _2168 Position (kb) 309 310 311 312Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 308.201 kb on - strand, within B158DRAFT_2166at 308.218 kb on - strand, within B158DRAFT_2166at 308.244 kb on + strand, within B158DRAFT_2166at 308.244 kb on + strand, within B158DRAFT_2166at 308.244 kb on + strand, within B158DRAFT_2166at 308.244 kb on + strand, within B158DRAFT_2166at 308.252 kb on - strand, within B158DRAFT_2166at 308.300 kb on + strand, within B158DRAFT_2166at 308.308 kb on - strand, within B158DRAFT_2166at 308.318 kb on + strand, within B158DRAFT_2166at 308.365 kb on - strand, within B158DRAFT_2166at 308.399 kb on + strand, within B158DRAFT_2166at 308.414 kb on + strand, within B158DRAFT_2166at 308.414 kb on + strand, within B158DRAFT_2166at 308.414 kb on + strand, within B158DRAFT_2166at 308.422 kb on - strand, within B158DRAFT_2166at 308.422 kb on - strand, within B158DRAFT_2166at 308.422 kb on - strand, within B158DRAFT_2166at 308.522 kb on + strand, within B158DRAFT_2166at 308.703 kb on - strand, within B158DRAFT_2166at 308.703 kb on - strand, within B158DRAFT_2166at 308.729 kb on + strand, within B158DRAFT_2166at 308.729 kb on + strand, within B158DRAFT_2166at 308.736 kb on + strand, within B158DRAFT_2166at 308.736 kb on + strand, within B158DRAFT_2166at 308.736 kb on + strand, within B158DRAFT_2166at 308.736 kb on + strand, within B158DRAFT_2166at 308.744 kb on - strand, within B158DRAFT_2166at 308.744 kb on - strand, within B158DRAFT_2166at 308.810 kb on + strand, within B158DRAFT_2166at 308.822 kb on + strand, within B158DRAFT_2166at 308.830 kb on + strand, within B158DRAFT_2166at 308.838 kb on - strand, within B158DRAFT_2166at 308.838 kb on - strand, within B158DRAFT_2166at 308.850 kb on - strand, within B158DRAFT_2166at 308.856 kb on + strand, within B158DRAFT_2166at 308.872 kb on - strand, within B158DRAFT_2166at 308.892 kb on + strand, within B158DRAFT_2166at 308.925 kb on - strand, within B158DRAFT_2166at 308.961 kb on + strand, within B158DRAFT_2166at 308.961 kb on + strand, within B158DRAFT_2166at 308.969 kb on - strand, within B158DRAFT_2166at 309.147 kb on - strandat 309.147 kb on - strandat 309.200 kb on + strandat 309.224 kb on - strandat 309.305 kb on + strandat 309.338 kb on + strandat 309.346 kb on - strandat 309.348 kb on + strandat 309.446 kb on - strand, within B158DRAFT_2167at 309.519 kb on + strand, within B158DRAFT_2167at 309.563 kb on + strand, within B158DRAFT_2167at 309.665 kb on + strand, within B158DRAFT_2167at 309.665 kb on + strand, within B158DRAFT_2167at 309.665 kb on + strand, within B158DRAFT_2167at 309.665 kb on + strand, within B158DRAFT_2167at 309.665 kb on + strand, within B158DRAFT_2167at 309.673 kb on - strand, within B158DRAFT_2167at 309.673 kb on - strand, within B158DRAFT_2167at 309.673 kb on - strand, within B158DRAFT_2167at 309.759 kb on + strand, within B158DRAFT_2167at 309.759 kb on + strand, within B158DRAFT_2167at 309.946 kb on + strand, within B158DRAFT_2167at 310.005 kb on - strand, within B158DRAFT_2167at 310.011 kb on + strand, within B158DRAFT_2167at 310.201 kb on + strand, within B158DRAFT_2167at 310.214 kb on - strand, within B158DRAFT_2167at 310.324 kb on + strand, within B158DRAFT_2167at 310.332 kb on - strand, within B158DRAFT_2167at 310.419 kb on - strand, within B158DRAFT_2167at 310.451 kb on + strand, within B158DRAFT_2167at 310.451 kb on + strand, within B158DRAFT_2167at 310.483 kb on + strand, within B158DRAFT_2167at 310.493 kb on + strand, within B158DRAFT_2167at 310.595 kb on + strand, within B158DRAFT_2167at 310.632 kb on + strand, within B158DRAFT_2167at 310.637 kb on + strand, within B158DRAFT_2167at 310.640 kb on - strand, within B158DRAFT_2167at 310.669 kb on + strand, within B158DRAFT_2167at 310.696 kb on + strand, within B158DRAFT_2167at 310.790 kb on + strand, within B158DRAFT_2167at 310.936 kb on + strand, within B158DRAFT_2167at 310.954 kb on - strand, within B158DRAFT_2167at 310.954 kb on - strand, within B158DRAFT_2167at 311.056 kb on + strand, within B158DRAFT_2167at 311.196 kb on - strand, within B158DRAFT_2167at 311.292 kb on + strand, within B158DRAFT_2167at 311.387 kb on + strand, within B158DRAFT_2167at 311.395 kb on - strand, within B158DRAFT_2167at 311.461 kb on + strand, within B158DRAFT_2167at 311.469 kb on - strand, within B158DRAFT_2167at 311.476 kb on - strand, within B158DRAFT_2167at 311.528 kb on + strand, within B158DRAFT_2167at 311.613 kb on + strandat 311.621 kb on - strandat 311.638 kb on - strandat 311.779 kb on + strandat 311.787 kb on - strandat 311.903 kb on - strandat 311.903 kb on - strandat 312.052 kb on + strandat 312.062 kb on + strandat 312.069 kb on + strandat 312.077 kb on - strandat 312.077 kb on - strandat 312.077 kb on - strandat 312.077 kb on - strandat 312.095 kb on + strandat 312.095 kb on + strandat 312.102 kb on + strandat 312.102 kb on + strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.103 kb on - strandat 312.110 kb on - strandat 312.120 kb on - strandat 312.228 kb on - strand, within B158DRAFT_2168at 312.295 kb on + strand, within B158DRAFT_2168at 312.303 kb on - strand, within B158DRAFT_2168at 312.331 kb on + strand, within B158DRAFT_2168at 312.341 kb on + strand, within B158DRAFT_2168at 312.381 kb on - strand, within B158DRAFT_2168at 312.453 kb on + strand, within B158DRAFT_2168at 312.453 kb on + strand, within B158DRAFT_2168at 312.486 kb on + strand, within B158DRAFT_2168at 312.501 kb on + strand, within B158DRAFT_2168at 312.501 kb on + strand, within B158DRAFT_2168at 312.511 kb on + strand, within B158DRAFT_2168at 312.807 kb on + strand, within B158DRAFT_2168at 312.815 kb on - strand, within B158DRAFT_2168

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
remove
308,201 - B158DRAFT_2166 0.11 -1.4
308,218 - B158DRAFT_2166 0.13 -0.8
308,244 + B158DRAFT_2166 0.15 -0.6
308,244 + B158DRAFT_2166 0.15 -0.7
308,244 + B158DRAFT_2166 0.15 -0.3
308,244 + B158DRAFT_2166 0.15 -0.0
308,252 - B158DRAFT_2166 0.16 -0.8
308,300 + B158DRAFT_2166 0.21 +0.0
308,308 - B158DRAFT_2166 0.22 -1.0
308,318 + B158DRAFT_2166 0.23 +0.4
308,365 - B158DRAFT_2166 0.28 -0.6
308,399 + B158DRAFT_2166 0.31 +0.0
308,414 + B158DRAFT_2166 0.32 -0.1
308,414 + B158DRAFT_2166 0.32 +0.1
308,414 + B158DRAFT_2166 0.32 -0.1
308,422 - B158DRAFT_2166 0.33 -1.6
308,422 - B158DRAFT_2166 0.33 -1.2
308,422 - B158DRAFT_2166 0.33 +0.7
308,522 + B158DRAFT_2166 0.43 -0.1
308,703 - B158DRAFT_2166 0.61 -0.6
308,703 - B158DRAFT_2166 0.61 -0.6
308,729 + B158DRAFT_2166 0.64 -0.6
308,729 + B158DRAFT_2166 0.64 -0.2
308,736 + B158DRAFT_2166 0.65 +0.5
308,736 + B158DRAFT_2166 0.65 -0.3
308,736 + B158DRAFT_2166 0.65 +0.6
308,736 + B158DRAFT_2166 0.65 +0.1
308,744 - B158DRAFT_2166 0.66 -1.6
308,744 - B158DRAFT_2166 0.66 -1.3
308,810 + B158DRAFT_2166 0.72 -0.6
308,822 + B158DRAFT_2166 0.73 -0.6
308,830 + B158DRAFT_2166 0.74 -0.6
308,838 - B158DRAFT_2166 0.75 -0.3
308,838 - B158DRAFT_2166 0.75 -0.8
308,850 - B158DRAFT_2166 0.76 -1.8
308,856 + B158DRAFT_2166 0.77 -0.4
308,872 - B158DRAFT_2166 0.78 -3.5
308,892 + B158DRAFT_2166 0.80 +0.0
308,925 - B158DRAFT_2166 0.84 -1.9
308,961 + B158DRAFT_2166 0.87 -0.1
308,961 + B158DRAFT_2166 0.87 +1.0
308,969 - B158DRAFT_2166 0.88 -2.5
309,147 - -2.7
309,147 - -3.9
309,200 + -2.5
309,224 - -3.5
309,305 + -2.5
309,338 + -2.7
309,346 - -2.2
309,348 + -3.2
309,446 - B158DRAFT_2167 0.12 -3.6
309,519 + B158DRAFT_2167 0.15 -3.2
309,563 + B158DRAFT_2167 0.17 -2.6
309,665 + B158DRAFT_2167 0.20 -2.3
309,665 + B158DRAFT_2167 0.20 -1.2
309,665 + B158DRAFT_2167 0.20 -1.7
309,665 + B158DRAFT_2167 0.20 -2.2
309,665 + B158DRAFT_2167 0.20 -1.6
309,673 - B158DRAFT_2167 0.21 -4.3
309,673 - B158DRAFT_2167 0.21 -3.5
309,673 - B158DRAFT_2167 0.21 -1.3
309,759 + B158DRAFT_2167 0.24 -3.2
309,759 + B158DRAFT_2167 0.24 -3.7
309,946 + B158DRAFT_2167 0.31 -2.4
310,005 - B158DRAFT_2167 0.33 -0.8
310,011 + B158DRAFT_2167 0.33 -4.5
310,201 + B158DRAFT_2167 0.40 -4.3
310,214 - B158DRAFT_2167 0.40 -3.5
310,324 + B158DRAFT_2167 0.44 -3.4
310,332 - B158DRAFT_2167 0.45 -2.9
310,419 - B158DRAFT_2167 0.48 -3.4
310,451 + B158DRAFT_2167 0.49 -2.3
310,451 + B158DRAFT_2167 0.49 -3.4
310,483 + B158DRAFT_2167 0.50 -4.6
310,493 + B158DRAFT_2167 0.51 -3.4
310,595 + B158DRAFT_2167 0.54 -2.6
310,632 + B158DRAFT_2167 0.56 -1.4
310,637 + B158DRAFT_2167 0.56 -3.3
310,640 - B158DRAFT_2167 0.56 -3.3
310,669 + B158DRAFT_2167 0.57 -3.4
310,696 + B158DRAFT_2167 0.58 -4.0
310,790 + B158DRAFT_2167 0.61 -2.3
310,936 + B158DRAFT_2167 0.67 -2.8
310,954 - B158DRAFT_2167 0.67 -6.0
310,954 - B158DRAFT_2167 0.67 -3.2
311,056 + B158DRAFT_2167 0.71 -3.5
311,196 - B158DRAFT_2167 0.76 -1.7
311,292 + B158DRAFT_2167 0.80 -2.5
311,387 + B158DRAFT_2167 0.83 -3.2
311,395 - B158DRAFT_2167 0.83 -3.7
311,461 + B158DRAFT_2167 0.86 -1.2
311,469 - B158DRAFT_2167 0.86 -2.7
311,476 - B158DRAFT_2167 0.86 -3.6
311,528 + B158DRAFT_2167 0.88 -1.2
311,613 + -3.8
311,621 - -3.1
311,638 - -1.8
311,779 + -0.5
311,787 - -2.3
311,903 - -2.8
311,903 - -1.4
312,052 + -3.4
312,062 + -4.0
312,069 + -2.6
312,077 - -2.7
312,077 - -1.2
312,077 - -0.8
312,077 - -2.4
312,095 + -4.5
312,095 + -2.2
312,102 + -1.9
312,102 + -1.8
312,103 - -0.4
312,103 - -1.2
312,103 - -3.5
312,110 - -2.3
312,120 - -1.3
312,228 - B158DRAFT_2168 0.11 -1.8
312,295 + B158DRAFT_2168 0.13 -1.4
312,303 - B158DRAFT_2168 0.13 -2.9
312,331 + B158DRAFT_2168 0.14 -0.8
312,341 + B158DRAFT_2168 0.14 -1.6
312,381 - B158DRAFT_2168 0.16 -4.6
312,453 + B158DRAFT_2168 0.18 -2.8
312,453 + B158DRAFT_2168 0.18 -1.8
312,486 + B158DRAFT_2168 0.19 -1.0
312,501 + B158DRAFT_2168 0.19 -3.2
312,501 + B158DRAFT_2168 0.19 -3.2
312,511 + B158DRAFT_2168 0.19 -2.4
312,807 + B158DRAFT_2168 0.28 -2.6
312,815 - B158DRAFT_2168 0.28 -2.7

Or see this region's nucleotide sequence