Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2112

Experiment: m.b. Cisplatin 0.0125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2110 and B158DRAFT_2112 are separated by 690 nucleotidesB158DRAFT_2112 and B158DRAFT_2113 are separated by 369 nucleotidesB158DRAFT_2113 and B158DRAFT_2114 are separated by 2 nucleotides B158DRAFT_2110: B158DRAFT_2110 - Protein of unknown function (DUF3016)., at 243,303 to 243,797 _2110 B158DRAFT_2112: B158DRAFT_2112 - Protein of Unknown function (DUF2784)., at 244,488 to 244,898 _2112 B158DRAFT_2113: B158DRAFT_2113 - mraZ protein, at 245,268 to 245,723 _2113 B158DRAFT_2114: B158DRAFT_2114 - S-adenosyl-methyltransferase MraW, at 245,726 to 246,661 _2114 Position (kb) 244 245Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 243.592 kb on - strand, within B158DRAFT_2110at 243.660 kb on + strand, within B158DRAFT_2110at 243.669 kb on - strand, within B158DRAFT_2110at 243.670 kb on + strand, within B158DRAFT_2110at 243.678 kb on - strand, within B158DRAFT_2110at 243.678 kb on - strand, within B158DRAFT_2110at 243.678 kb on - strand, within B158DRAFT_2110at 243.711 kb on + strand, within B158DRAFT_2110at 243.716 kb on + strand, within B158DRAFT_2110at 243.716 kb on + strand, within B158DRAFT_2110at 243.719 kb on - strand, within B158DRAFT_2110at 243.724 kb on - strand, within B158DRAFT_2110at 243.759 kb on - strandat 243.780 kb on + strandat 244.295 kb on + strandat 244.295 kb on + strandat 244.326 kb on - strandat 244.365 kb on + strandat 244.368 kb on - strandat 244.373 kb on - strandat 244.373 kb on - strandat 244.373 kb on - strandat 244.410 kb on + strandat 244.410 kb on + strandat 244.418 kb on - strandat 244.418 kb on - strandat 244.418 kb on - strandat 244.418 kb on - strandat 244.418 kb on - strandat 244.486 kb on + strandat 244.537 kb on + strand, within B158DRAFT_2112at 244.577 kb on - strand, within B158DRAFT_2112at 244.590 kb on - strand, within B158DRAFT_2112at 244.630 kb on - strand, within B158DRAFT_2112at 244.673 kb on + strand, within B158DRAFT_2112at 244.673 kb on + strand, within B158DRAFT_2112at 244.673 kb on + strand, within B158DRAFT_2112at 244.673 kb on + strand, within B158DRAFT_2112at 244.681 kb on - strand, within B158DRAFT_2112at 244.681 kb on - strand, within B158DRAFT_2112at 244.686 kb on - strand, within B158DRAFT_2112at 244.795 kb on - strand, within B158DRAFT_2112at 244.820 kb on + strand, within B158DRAFT_2112at 244.820 kb on + strand, within B158DRAFT_2112at 244.828 kb on - strand, within B158DRAFT_2112at 244.828 kb on - strand, within B158DRAFT_2112at 244.828 kb on - strand, within B158DRAFT_2112at 244.828 kb on - strand, within B158DRAFT_2112at 244.830 kb on - strand, within B158DRAFT_2112at 244.832 kb on + strand, within B158DRAFT_2112at 244.850 kb on + strand, within B158DRAFT_2112at 244.858 kb on - strandat 244.858 kb on - strandat 244.864 kb on + strandat 244.864 kb on + strandat 244.871 kb on + strandat 244.872 kb on - strandat 244.872 kb on - strandat 244.872 kb on - strandat 244.879 kb on - strandat 244.914 kb on + strandat 244.914 kb on + strandat 244.921 kb on + strandat 244.929 kb on - strandat 244.940 kb on + strandat 245.124 kb on + strandat 245.551 kb on + strand, within B158DRAFT_2113at 245.551 kb on + strand, within B158DRAFT_2113at 245.551 kb on + strand, within B158DRAFT_2113at 245.551 kb on + strand, within B158DRAFT_2113at 245.551 kb on + strand, within B158DRAFT_2113at 245.551 kb on + strand, within B158DRAFT_2113at 245.551 kb on + strand, within B158DRAFT_2113at 245.606 kb on + strand, within B158DRAFT_2113at 245.607 kb on + strand, within B158DRAFT_2113at 245.664 kb on + strand, within B158DRAFT_2113at 245.675 kb on + strand, within B158DRAFT_2113at 245.748 kb on + strandat 245.748 kb on + strandat 245.748 kb on + strandat 245.766 kb on + strandat 245.791 kb on + strandat 245.831 kb on + strand, within B158DRAFT_2114at 245.864 kb on + strand, within B158DRAFT_2114

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
remove
243,592 - B158DRAFT_2110 0.58 +0.3
243,660 + B158DRAFT_2110 0.72 +0.4
243,669 - B158DRAFT_2110 0.74 +1.2
243,670 + B158DRAFT_2110 0.74 +0.3
243,678 - B158DRAFT_2110 0.76 +0.4
243,678 - B158DRAFT_2110 0.76 -0.3
243,678 - B158DRAFT_2110 0.76 -0.3
243,711 + B158DRAFT_2110 0.82 -0.0
243,716 + B158DRAFT_2110 0.83 +0.3
243,716 + B158DRAFT_2110 0.83 -0.0
243,719 - B158DRAFT_2110 0.84 +0.1
243,724 - B158DRAFT_2110 0.85 +0.1
243,759 - -0.8
243,780 + +0.4
244,295 + -0.1
244,295 + -1.0
244,326 - -0.0
244,365 + +0.3
244,368 - -1.1
244,373 - +0.1
244,373 - -0.5
244,373 - -0.3
244,410 + +0.3
244,410 + -0.5
244,418 - -0.3
244,418 - +0.8
244,418 - +0.0
244,418 - -0.1
244,418 - +0.2
244,486 + +0.1
244,537 + B158DRAFT_2112 0.12 +0.3
244,577 - B158DRAFT_2112 0.22 -0.9
244,590 - B158DRAFT_2112 0.25 -0.7
244,630 - B158DRAFT_2112 0.35 -0.5
244,673 + B158DRAFT_2112 0.45 +0.2
244,673 + B158DRAFT_2112 0.45 -1.0
244,673 + B158DRAFT_2112 0.45 -0.0
244,673 + B158DRAFT_2112 0.45 +0.2
244,681 - B158DRAFT_2112 0.47 -1.6
244,681 - B158DRAFT_2112 0.47 -0.7
244,686 - B158DRAFT_2112 0.48 -0.2
244,795 - B158DRAFT_2112 0.75 +0.6
244,820 + B158DRAFT_2112 0.81 -0.3
244,820 + B158DRAFT_2112 0.81 -0.0
244,828 - B158DRAFT_2112 0.83 -0.1
244,828 - B158DRAFT_2112 0.83 +0.6
244,828 - B158DRAFT_2112 0.83 -0.4
244,828 - B158DRAFT_2112 0.83 -0.0
244,830 - B158DRAFT_2112 0.83 -0.3
244,832 + B158DRAFT_2112 0.84 -0.3
244,850 + B158DRAFT_2112 0.88 -0.2
244,858 - -0.1
244,858 - +0.1
244,864 + -0.3
244,864 + -0.4
244,871 + +0.2
244,872 - -1.5
244,872 - -1.0
244,872 - +1.2
244,879 - -0.4
244,914 + +0.1
244,914 + -0.6
244,921 + -0.3
244,929 - -1.2
244,940 + +0.4
245,124 + -2.3
245,551 + B158DRAFT_2113 0.62 -4.1
245,551 + B158DRAFT_2113 0.62 -1.4
245,551 + B158DRAFT_2113 0.62 -2.0
245,551 + B158DRAFT_2113 0.62 -1.4
245,551 + B158DRAFT_2113 0.62 -0.8
245,551 + B158DRAFT_2113 0.62 -1.1
245,551 + B158DRAFT_2113 0.62 -3.7
245,606 + B158DRAFT_2113 0.74 -3.7
245,607 + B158DRAFT_2113 0.74 -0.6
245,664 + B158DRAFT_2113 0.87 -1.1
245,675 + B158DRAFT_2113 0.89 -2.9
245,748 + -2.4
245,748 + -2.9
245,748 + -2.6
245,766 + -2.0
245,791 + -2.6
245,831 + B158DRAFT_2114 0.11 -3.0
245,864 + B158DRAFT_2114 0.15 -1.9

Or see this region's nucleotide sequence