Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1344

Experiment: m.b. Cisplatin 0.0125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1343 and B158DRAFT_1344 are separated by 19 nucleotidesB158DRAFT_1344 and B158DRAFT_1345 are separated by 390 nucleotides B158DRAFT_1343: B158DRAFT_1343 - methylisocitrate lyase, at 1,386,101 to 1,386,985 _1343 B158DRAFT_1344: B158DRAFT_1344 - 2-methylcitrate synthase (EC 2.3.3.5), at 1,387,005 to 1,388,144 _1344 B158DRAFT_1345: B158DRAFT_1345 - aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent, at 1,388,535 to 1,391,123 _1345 Position (kb) 1387 1388 1389Strain fitness (log2 ratio) -2 -1 0 1at 1386.180 kb on - strandat 1386.289 kb on - strand, within B158DRAFT_1343at 1386.320 kb on - strand, within B158DRAFT_1343at 1386.327 kb on - strand, within B158DRAFT_1343at 1386.364 kb on - strand, within B158DRAFT_1343at 1386.364 kb on - strand, within B158DRAFT_1343at 1386.592 kb on - strand, within B158DRAFT_1343at 1386.604 kb on - strand, within B158DRAFT_1343at 1386.671 kb on - strand, within B158DRAFT_1343at 1386.748 kb on - strand, within B158DRAFT_1343at 1386.748 kb on - strand, within B158DRAFT_1343at 1386.998 kb on - strandat 1387.004 kb on - strandat 1387.043 kb on + strandat 1387.043 kb on + strandat 1387.043 kb on + strandat 1387.043 kb on + strandat 1387.043 kb on + strandat 1387.043 kb on + strandat 1387.051 kb on - strandat 1387.100 kb on - strandat 1387.272 kb on - strand, within B158DRAFT_1344at 1387.307 kb on - strand, within B158DRAFT_1344at 1387.335 kb on + strand, within B158DRAFT_1344at 1387.376 kb on + strand, within B158DRAFT_1344at 1387.476 kb on - strand, within B158DRAFT_1344at 1387.530 kb on - strand, within B158DRAFT_1344at 1387.545 kb on + strand, within B158DRAFT_1344at 1387.553 kb on - strand, within B158DRAFT_1344at 1387.553 kb on - strand, within B158DRAFT_1344at 1387.570 kb on - strand, within B158DRAFT_1344at 1387.572 kb on + strand, within B158DRAFT_1344at 1387.580 kb on - strand, within B158DRAFT_1344at 1387.588 kb on - strand, within B158DRAFT_1344at 1387.588 kb on - strand, within B158DRAFT_1344at 1387.593 kb on + strand, within B158DRAFT_1344at 1387.629 kb on + strand, within B158DRAFT_1344at 1387.629 kb on + strand, within B158DRAFT_1344at 1387.631 kb on - strand, within B158DRAFT_1344at 1387.632 kb on - strand, within B158DRAFT_1344at 1387.637 kb on - strand, within B158DRAFT_1344at 1387.637 kb on - strand, within B158DRAFT_1344at 1387.637 kb on - strand, within B158DRAFT_1344at 1387.672 kb on + strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.680 kb on - strand, within B158DRAFT_1344at 1387.687 kb on - strand, within B158DRAFT_1344at 1387.719 kb on + strand, within B158DRAFT_1344at 1387.719 kb on + strand, within B158DRAFT_1344at 1387.727 kb on - strand, within B158DRAFT_1344at 1387.727 kb on - strand, within B158DRAFT_1344at 1387.729 kb on + strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.737 kb on - strand, within B158DRAFT_1344at 1387.803 kb on + strand, within B158DRAFT_1344at 1387.810 kb on - strand, within B158DRAFT_1344at 1387.891 kb on + strand, within B158DRAFT_1344at 1388.058 kb on - strandat 1388.422 kb on + strandat 1389.025 kb on - strand, within B158DRAFT_1345

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cisplatin 0.0125 mg/ml
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1,386,180 - -0.5
1,386,289 - B158DRAFT_1343 0.21 -1.3
1,386,320 - B158DRAFT_1343 0.25 -1.0
1,386,327 - B158DRAFT_1343 0.26 -0.9
1,386,364 - B158DRAFT_1343 0.30 -1.4
1,386,364 - B158DRAFT_1343 0.30 -0.8
1,386,592 - B158DRAFT_1343 0.55 -1.7
1,386,604 - B158DRAFT_1343 0.57 -0.3
1,386,671 - B158DRAFT_1343 0.64 -1.6
1,386,748 - B158DRAFT_1343 0.73 -1.1
1,386,748 - B158DRAFT_1343 0.73 -0.9
1,386,998 - -0.5
1,387,004 - +0.4
1,387,043 + -1.1
1,387,043 + -0.7
1,387,043 + +0.1
1,387,043 + +1.5
1,387,043 + +0.5
1,387,043 + -0.7
1,387,051 - +0.5
1,387,100 - +0.3
1,387,272 - B158DRAFT_1344 0.23 -0.1
1,387,307 - B158DRAFT_1344 0.26 -0.1
1,387,335 + B158DRAFT_1344 0.29 +0.1
1,387,376 + B158DRAFT_1344 0.33 -0.2
1,387,476 - B158DRAFT_1344 0.41 +0.7
1,387,530 - B158DRAFT_1344 0.46 +0.3
1,387,545 + B158DRAFT_1344 0.47 +0.4
1,387,553 - B158DRAFT_1344 0.48 +0.0
1,387,553 - B158DRAFT_1344 0.48 -0.1
1,387,570 - B158DRAFT_1344 0.50 +0.2
1,387,572 + B158DRAFT_1344 0.50 -0.7
1,387,580 - B158DRAFT_1344 0.50 -0.3
1,387,588 - B158DRAFT_1344 0.51 -0.1
1,387,588 - B158DRAFT_1344 0.51 -0.5
1,387,593 + B158DRAFT_1344 0.52 -0.2
1,387,629 + B158DRAFT_1344 0.55 -0.8
1,387,629 + B158DRAFT_1344 0.55 +0.5
1,387,631 - B158DRAFT_1344 0.55 -1.0
1,387,632 - B158DRAFT_1344 0.55 -0.3
1,387,637 - B158DRAFT_1344 0.55 -0.2
1,387,637 - B158DRAFT_1344 0.55 -0.5
1,387,637 - B158DRAFT_1344 0.55 -0.1
1,387,672 + B158DRAFT_1344 0.59 +0.2
1,387,680 - B158DRAFT_1344 0.59 -0.3
1,387,680 - B158DRAFT_1344 0.59 -0.5
1,387,680 - B158DRAFT_1344 0.59 -0.4
1,387,680 - B158DRAFT_1344 0.59 -0.7
1,387,680 - B158DRAFT_1344 0.59 -1.8
1,387,680 - B158DRAFT_1344 0.59 +0.3
1,387,687 - B158DRAFT_1344 0.60 -0.4
1,387,719 + B158DRAFT_1344 0.63 -0.5
1,387,719 + B158DRAFT_1344 0.63 +0.2
1,387,727 - B158DRAFT_1344 0.63 +0.5
1,387,727 - B158DRAFT_1344 0.63 -0.6
1,387,729 + B158DRAFT_1344 0.64 -0.4
1,387,737 - B158DRAFT_1344 0.64 -0.3
1,387,737 - B158DRAFT_1344 0.64 -0.2
1,387,737 - B158DRAFT_1344 0.64 +0.2
1,387,737 - B158DRAFT_1344 0.64 +0.4
1,387,803 + B158DRAFT_1344 0.70 -0.4
1,387,810 - B158DRAFT_1344 0.71 +0.2
1,387,891 + B158DRAFT_1344 0.78 -0.1
1,388,058 - -0.4
1,388,422 + -0.4
1,389,025 - B158DRAFT_1345 0.19 -1.3

Or see this region's nucleotide sequence